Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsLaMu_04g0030761		OGI:04063510 \| 16/16			LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)			Chr04:35538585-35538918		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		agggtgattgccgggcgaaagctcagtcttggctcctttgagtcccgacggacggcggtggcagtttttctgtcgcttctcttcttgaagacgtcgttttggcatcccctagggggcaatctcggttgtccctttgttggtctagtggcagccggtcacgcttagcggcggccggtccggtgctagccttctcctgggcttgtgtgttggcgatgtcggtgtgtgggtggtggtattttttcctttttcctgtttacgaccctctagggttgtaatcttgtaatttttttcctgctctatcaatagaacttcgcaccgtctcgtgcgagtcgtt
CDS seq		atgtcggtgtgtgggtggtggtattttttcctttttcctgtttacgaccctctaggg
Protein seq		MSVCGWWYFFLFPVYDPLG
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsLaMu_04g0030761	OsLaMu_04g0030761.01	Chr04	35538585	35538918	+	IsoSeq
CDS seq	atgtcggtgtgtgggtggtggtattttttcctttttcctgtttacgaccctctaggg
Protein seq	MSVCGWWYFFLFPVYDPLG

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	11.162854	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	NA	NA	NA	NA	NA
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_04g0030730	RBH	0.348645	18.958942	9.783644
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_04g0031510	RBH	0.0	3.399494	4.819122
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_04g0031080	RBH	0.391763	3.793259	4.018885
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_04g0030910	RBH	0.000000	0.186018	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_04g0031150	RBH	1.338664	18.189276	25.627722
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_11G0311400	SBH	0	0.010016	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_04g0029800	RBH	0.000000	0.000000	0.405911
Zhenshan 97 \| ZS97RS3 \| HZAU	NA	NA	NA	NA	NA
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_04g0030750	RBH	0.324517	0.797446	2.792115
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	NA	NA	NA	NA	NA
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_04G030260	RBH	0.0	0.000000	3.552912
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_04g0029950	RBH	0.000000	0.000000	4.405804

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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