Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0371000 | OGI:04058110 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:18056917-18057576 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACAGGGGGTGTGGTTGTAGACCCCGGATGTGTAAGGTGTAGTCGAACATGACCTGATAATAGCTTAGACCCGTCGTGATGTTTGTCTGGCAGCAGCCTATCCCGACGCAGCTGCCGTTGATGGCGCTGCTCAAGTCACCTCGCCGGCAGACGGACACGCACCCGCTCATGTACTTGCCCACGTTGTAATCGTCGAAGGTGTAGGCCAGCGTCCGGCACCCGATGACCGTGAACTTGTTGGCCGAGTCGGAGAGCCTGTAGGGCGTGCCCGTGAGGTTCAGATACCACACGTCCGCAGGGTTCATCTGTCGGGACGTGCGGTTGTAGCAGGAAGAAGATACGTGATTCATTACCCGGGCCTGACCATTGCCGAGGGAGACGACCTCGATGTTTCCAACGAACGGCTTGGAGACGCCGTTCCCCGTGTCGTTGCAGTCGACTTCGAAGCTAGGCGCCATGGCGCAGCCGCTTGAGCTGACGCCGAACGGGTATGGGATCTGTACACCGCCGCAGTCGTGGCATGATCGGGCGATTGGCTCAGCCGCCGCGAGGGGCTGATCAGCAGCAAGCTTTGTACTGATGAGAAATAGCATTATTAGTACTAGGCAAATATGTCCATCGACTGCGCTGCGGATAGCTGCACTTCTGTGGAGAGGCAT
More
|
||||||||||
| CDS seq | ATGCCTCTCCACAGAAGTGCAGCTATCCGCAGCGCAGTCGATGGACATATTTGCCTAGTACTAATAATGCTATTTCTCATCAGTACAAAGCTTGCTGCTGATCAGCCCCTCGCGGCGGCTGAGCCAATCGCCCGATCATGCCACGACTGCGGCGGTGTACAGATCCCATACCCGTTCGGCGTCAGCTCAAGCGGCTGCGCCATGGCGCCTAGCTTCGAAGTCGACTGCAACGACACGGGGAACGGCGTCTCCAAGCCGTTCGTTGGAAACATCGAGGTCGTCTCCCTCGGCAATGGTCAGGCCCGGGTAATGAATCACGTATCTTCTTCCTGCTACAACCGCACGTCCCGACAGATGAACCCTGCGGACGTGTGGTATCTGAACCTCACGGGCACGCCCTACAGGCTCTCCGACTCGGCCAACAAGTTCACGGTCATCGGGTGCCGGACGCTGGCCTACACCTTCGACGATTACAACGTGGGCAAGTACATGAGCGGGTGCGTGTCCGTCTGCCGGCGAGGTGACTTGAGCAGCGCCATCAACGGCAGCTGCGTCGGGATAGGCTGCTGCCAGACAAACATCACGACGGGTCTAAGCTATTATCAGGTCATGTTCGACTACACCTTACACATCCGGGGTCTACAACCACACCCCCTGTAG
More
|
||||||||||
| Protein seq | MPLHRSAAIRSAVDGHICLVLIMLFLISTKLAADQPLAAAEPIARSCHDCGGVQIPYPFGVSSSGCAMAPSFEVDCNDTGNGVSKPFVGNIEVVSLGNGQARVMNHVSSSCYNRTSRQMNPADVWYLNLTGTPYRLSDSANKFTVIGCRTLAYTFDDYNVGKYMSGCVSVCRRGDLSSAINGSCVGIGCCQTNITTGLSYYQVMFDYTLHIRGLQPHPL |
||||||||||
| Function | Wall-associated receptor kinase 2 [UniProtKB/Swiss-Prot:Q9LMP1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0371000 | OsNip_04t0371000-00 | Chr04 | 18056917 | 18057576 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCTCTCCACAGAAGTGCAGCTATCCGCAGCGCAGTCGATGGACATATTTGCCTAGTACTAATAATGCTATTTCTCATCAGTACAAAGCTTGCTGCTGATCAGCCCCTCGCGGCGGCTGAGCCAATCGCCCGATCATGCCACGACTGCGGCGGTGTACAGATCCCATACCCGTTCGGCGTCAGCTCAAGCGGCTGCGCCATGGCGCCTAGCTTCGAAGTCGACTGCAACGACACGGGGAACGGCGTCTCCAAGCCGTTCGTTGGAAACATCGAGGTCGTCTCCCTCGGCAATGGTCAGGCCCGGGTAATGAATCACGTATCTTCTTCCTGCTACAACCGCACGTCCCGACAGATGAACCCTGCGGACGTGTGGTATCTGAACCTCACGGGCACGCCCTACAGGCTCTCCGACTCGGCCAACAAGTTCACGGTCATCGGGTGCCGGACGCTGGCCTACACCTTCGACGATTACAACGTGGGCAAGTACATGAGCGGGTGCGTGTCCGTCTGCCGGCGAGGTGACTTGAGCAGCGCCATCAACGGCAGCTGCGTCGGGATAGGCTGCTGCCAGACAAACATCACGACGGGTCTAAGCTATTATCAGGTCATGTTCGACTACACCTTACACATCCGGGGTCTACAACCACACCCCCTGTAG
More
|
|||||||
| Protein seq | MPLHRSAAIRSAVDGHICLVLIMLFLISTKLAADQPLAAAEPIARSCHDCGGVQIPYPFGVSSSGCAMAPSFEVDCNDTGNGVSKPFVGNIEVVSLGNGQARVMNHVSSSCYNRTSRQMNPADVWYLNLTGTPYRLSDSANKFTVIGCRTLAYTFDDYNVGKYMSGCVSVCRRGDLSSAINGSCVGIGCCQTNITTGLSYYQVMFDYTLHIRGLQPHPL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.467411 | 3.316860 | 3.718253 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0370900 | RBH | 0.191076 | 0.000000 | 1.171410 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30250 | RBH | 0.451409 | 1.094876 | 0.472126 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0371000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010090 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010860 | RBH | 0.0 | 0.242682 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010570 | SBH | 1.495480 | 0.0 | 0.526729 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010250 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010490 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0293100 | SBH | 0 | 0.053278 | 0.0232095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009910 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0284400 | RBH | 0.2327105 | 2.572016 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010100 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010160 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010660 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010420 | SBH | 0.000000 | 0.255983 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009550 | SBH | 0.057031 | 0.082531 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009580 | SBH | 0.0 | 5.172986 | 0.0 |
