Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g30250 | OGI:04058110 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:18053116-18057610 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTTTTTACAGACGGTACGTTCTAGTTCATCTTCCATTCTACTGATCCTATCATGGCTTGGACTTGTTCTAAGTCTATATATGCATGTCTTCTAGTAGTAGCACTACTACAATACCCATTATTCCGGGCGGTAGGATAGATTATCCTGTGCGGTCACCCGGCCTGCCTGCAGCTCCTCGTCTGGGAAAATCTCTATCTCCACTCTCTTGTAGAGTGTGAACCCGATATTGCCTTCTGCTTTCATCATTTCTAGCAATAGTTGGCCTCCATGTTGTTGAAAAAAACTCATCAGTCTGTCTTAACAAAGCTTGTTTTCTAATGCTCCTTTTGTGCCGAATCACTTCCCATCCAAGGAAAGCAAACAGGCCAGCCAACACACATGCAGCAATTCCTAGAGAGCGAAGATTTATCATTAGTAAAAAAAAGATTTAAGCAAGCATTTTAGCACCAGTGTTTTTATATTGATGTTATTGAGAAGTCCATGACCAGATCAAGCAGATCATAAGATGCAACAGCAACTGAGTTGGAATAATACGTGCCCTACCAATTGCCAGCTGTGCTTTTAGAGGTAAGAAGTCCTTCCGACATCCTCCAGGAATAGTTGCATTTCCTCGGCTACCCGCACGGCAGAAACAATCAAAATCGCCGGGTTTGTTATGGCATATTCTCCGTGACAAGGGTAATTATTAGAATCTTGGCATTCATTAATATCTACAGTATAATCAAATACAAAGGCATTTAGAAAGAAAAATATTATATTTTTTGCAAGATAATTATTTTGGAAATATAATTTGCCTCTTATATGCTACACAAAATATTTTCATTGTTTTCGTGTACATGAATCATCTTTCATAAGCTGCCCAAAAACATTTTGTGCTATTATCATTTCTGCAAACGATTGCTCTTCATATGCTGAACAAAAAATCTAATGAAAAAAAAACAAACTTAATTAACAAATATACAAGACTTATATACTGCACAAGTTGGCTATATATAATATTTTCTTATTTGTTGGAAATATGTATACTGAGGCATTTTAGTTGTCAATATGTAGTGGAAATCATATATTTGGTGCAAACTCGTAAACTTTTGTATAGAGTTGAAAAAAAAATCAAAATATTCACACATATAGATAAGATGATATTAGACAACCATATGCATACAAAAATGTACTACCAAATTCAACTTTGTCTGTGAGATATAAATTAAAATTACCAAGCCACTATGAAATAACATTAATGTTTTATATCATTCCTACTGTTTCTCTTTTTCTTCACTATTTACTATTTTTATATCACAACAGTCAAGTTTGGTCTTGTAGTTTTGTATGATTTTCTAATATCATATTATCTATATGTGTGAACTTTTTGAGATTTTTTTAGAACTTTCTAGATGTTGTTTGCATGGTTACCACCAGGCTTCAAAGATGTGCTCTCCGCCTTATATTTGCCCCATTTCTATTTACAAATATATTTGAACATCTGCAAGGACAAATTTAATGGTTCTTCAAAGGTACTGGGGAAGTACCCAGTTTTAAGTTACCAAAATTTATACTACCTCCTCAACAACCATTAAATTTTGTTTTCTAAAAGATCATTCACTTTATTGGCATAGATTAGAAAAATTGACAAACTATCACTACTACATAAACTTTCTGTACGAGGACGCCTTTAGATGGCAGACGGACCGTAATTGGTAGCATCTGTAAAATTCGACCTCCATTTTCGCATACGGTTCCTTAAGAGACCCGCATGCAAAAATCTATTTTCGCAGGCGGGCCTCTTAAGGGGCCGCAAGTAAAAATGAGTCTATTTTCGCATGCAGGCCTTTTAACGATCCGCATGCGAAAATCTATTTTCGGATCTCTTTAGGGTCCGCATGCAAAAATTTATCCCTCCTCACCACTTCAAAATTTTTCACCTCATATCCTCTCCTCTCTCAACACTCTGATATTTTCCCCTCTCTTACTTCACCTCTATCTCTCTCATTTTCTCCTCTCCCTCTCTTTTTCTTCCTCTCCTCCCTCTCTTTCTCTCACAGAGCGGGAGGCGCCGGGAGCGGGCACCGCCTCGCGATGCGGACTCCGGCGGCGGCAGTGGGCGAGGGCCACGTCTGGGGCGGGCGTGGGCGACGGCGGCGGCCCTCCCCCTCCCGGATCCGCCGGCTGCTGCTCTCCCCGTCCTGATCTGCCGGCGGTGGCCCTCCCCGCACCAATCCGCCAGCGGCGGCCCTCCTGGTGCCTCCTCGCCGTGACGGGAGGAGGACAATGTCAACGGTGGTGATGGCGGCTTGAGGACGACGGCGATGACTGGAGGATGAGGATGACGGCGACGGCAACGACGACTGGAGGACAATGGCGGAGCGGCGGCGGGTGTATTAATTTTTCTATGTTTGGAATTTTTATTTTATTTCGCGATTTTTCCTTTTCGCGTGCGGCCGGTGAAAATCGGATTTTCACATGCGGTTGTGCGGGCCACATGTGAAAATCGTGATTTTTGCAGACCTTTTCTACCATGCAGCCCGCCCAACTGCATGCGAAAATACCTTCGTGGCTTGGTCCCCTTCGCACGAAGCCATGAATGTTGAGCACGGCCCTTTGGTACACACAGGCTCATCCGCCTTCACCTGTTTCTCCCGAGATCGAGCGCTCAAGCTCATTATTTGGCAGTGAAGGAACGAACCTCGCCAATGTCATGAAAAGAGGGCTCACCGGCATGCACCGAATCGGGCTGAGGGAGGACCCTCTAGGCCACCTATTTGTGGCTCCAGTAGTCCAAAGCGTAATGTTTTTTTTTTCAAAAAAAAAACTGGTCTAAAGTGTAATCAACTCTTTAAACATTGACCATCAATTTCCTTTATATATTTGATTAACCTTTTGAAAAGTGACATGGTTTATATATTTTTTTTATAATTTATTTTACAACAATTAATCTTAATTCTTACTCTCTCTGTCCCAAATTATAGGGCACTCTCTCTTTAAGAAAAAATCAAACTCGATAACTTTTAACTAATAATCGTACTAACCATGCTAAGTATTATGTATGTTGTATCACTAGATTCATATTTTTAATTACTTTTATGTGATGCAAATTTTATATTCATTGGGAACATAACATAAAATAAATTAATTGTCAAAGTATATCAACAAACACCGTGTAAAAAAATAGAAGCCTATAATTTGAGACGGGTGAGTACTATGAAAATCTAATTTATAGTTTATTTATTTATAATTAATAAATAAATTGTGTTGGTACATAAAAAATAATACACTGGGGCAGAATCGTCTTTTCATCCATCTACTAACGTTATGGACGACTAACAAAATGGCAAATAAAAGACAAAAGTTGACAATAAAGGGGTACACGAGCCAATTATAGGATTGAAAATAATTAACCGAACCAGTCAACTTGGGTAAAGAGAAAAAAAATTATCAGAGGAAAGAACTGTGCAATTACAATTTATATTAATCTTTCACTATCATGTATTGTTATAGGCGTAATACTCCCTCCGTTTCGAAATATTTGACACCGTTGACTTTTTAGCACATGTTTGATCGTTCTTCTTATTCAAAAACTTTTGTAAAATATGTAAAATTATATGCCTACATAAAAATATATTTAACAATGAATCAAATGATAGGAAAAAAATTAATAATTACTTAAATTTTTTGAATAAGACGAACGGTCAAACATATTTAAAAAAGTCAACGGCGTCAAACATTTCGAAACGGAGGGAGTATTTACCTTGACAGCCGTTGGAATCTTGAAGGTGAAGCTAGACGATTCCATGAGCACCGCGTAGCTACAGGGGGTGTGGTTGTAGACCCCGGATGTGTAAGGTGTAGTCGAACATGACCTGATAATAGCTTAGACCCGTCGTGATGTTTGTCTGGCAGCAGCCTATCCCGACGCAGCTGCCGTTGATGGCGCTGCTCAAGTCACCTCGCCGGCAGACGGACACGCACCCGCTCATGTACTTGCCCACGTTGTAATCGTCGAAGGTGTAGGCCAGCGTCCGGCACCCGATGACCGTGAACTTGTTGGCCGAGTCGGAGAGCCTGTAGGGCGTGCCCGTGAGGTTCAGATACCACACGTCCGCAGGGTTCATCTGTCGGGACGTGCGGTTGTAGCAGGAAGAAGATACGTGATTCATTACCCGGGCCTGACCATTGCCGAGGGAGACGACCTCGATGTTTCCAACGAACGGCTTGGAGACGCCGTTCCCCGTGTCGTTGCAGTCGACTTCGAAGCTAGGCGCCATGGCGCAGCCGCTTGAGCTGACGCCGAACGGGTATGGGATCTGTACACCGCCGCAGTCGTGGCATGATCGGGCGATTGGCTCAGCCGCCGCGAGGGGCTGATCAGCAGCAAGCTTTGTACTGATGAGAAATAGCATTATTAGTACTAGGCAAATATGTCCATCGACTGCGCTGCGGATAGCTGCACTTCTGTGGAGAGGCATGGGGCATGGATGAACTACTACGACTTTGTTTGTG
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| CDS seq | ATGCCTCTCCACAGAAGTGCAGCTATCCGCAGCGCAGTCGATGGACATATTTGCCTAGTACTAATAATGCTATTTCTCATCAGTACAAAGCTTGCTGCTGATCAGCCCCTCGCGGCGGCTGAGCCAATCGCCCGATCATGCCACGACTGCGGCGGTGTACAGATCCCATACCCGTTCGGCGTCAGCTCAAGCGGCTGCGCCATGGCGCCTAGCTTCGAAGTCGACTGCAACGACACGGGGAACGGCGTCTCCAAGCCGTTCGTTGGAAACATCGAGGTCGTCTCCCTCGGCAATGGTCAGGCCCGGGTAATGAATCACGTATCTTCTTCCTGCTACAACCGCACGTCCCGACAGATGAACCCTGCGGACGTGTGGTATCTGAACCTCACGGGCACGCCCTACAGGCTCTCCGACTCGGCCAACAAGTTCACGGTCATCGGGTGCCGGACGCTGGCCTACACCTTCGACGATTACAACGTGGGCAAGTACATGAGCGGGTGCGTGTCCGTCTGCCGGCGAGGTGACTTGAGCAGCGCCATCAACGGCAGCTGCGTCGGGATAGGCTGCTGCCAGACAAACATCACGACGGGTCTAAGCTATTATCAGGTCATGTTCGACTACACCTTACACATCCGGGGTCTACAACCACACCCCCTGTAG
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| Protein seq | MPLHRSAAIRSAVDGHICLVLIMLFLISTKLAADQPLAAAEPIARSCHDCGGVQIPYPFGVSSSGCAMAPSFEVDCNDTGNGVSKPFVGNIEVVSLGNGQARVMNHVSSSCYNRTSRQMNPADVWYLNLTGTPYRLSDSANKFTVIGCRTLAYTFDDYNVGKYMSGCVSVCRRGDLSSAINGSCVGIGCCQTNITTGLSYYQVMFDYTLHIRGLQPHPL |
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| Function | Wall-associated receptor kinase 2 [UniProtKB/Swiss-Prot:Q9LMP1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g30250 | LOC_Os04g30250.1 | Chr04 | 18053135 | 18057610 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCTCTCCACAGAAGTGCAGCTATCCGCAGCGCAGTCGATGGACATATTTGCCTAGTACTAATAATGCTATTTCTCATCAGTACAAAGCTTGCTGCTGATCAGCCCCTCGCGGCGGCTGAGCCAATCGCCCGATCATGCCACGACTGCGGCGGTGTACAGATCCCATACCCGTTCGGCGTCAGCTCAAGCGGCTGCGCCATGGCGCCTAGCTTCGAAGTCGACTGCAACGACACGGGGAACGGCGTCTCCAAGCCGTTCGTTGGAAACATCGAGGTCGTCTCCCTCGGCAATGGTCAGGCCCGGGTAATGAATCACGTATCTTCTTCCTGCTACAACCGCACGTCCCGACAGATGAACCCTGCGGACGTGTGGTATCTGAACCTCACGGGCACGCCCTACAGGCTCTCCGACTCGGCCAACAAGTTCACGGTCATCGGGTGCCGGACGCTGGCCTACACCTTCGACGATTACAACGTGGGCAAGTACATGAGCGGGTGCGTGTCCGTCTGCCGGCGAGGTGACTTGAGCAGCGCCATCAACGGCAGCTGCGTCGGGATAGGCTGCTGCCAGACAAACATCACGACGGGTCTAAGCTATTATCAGGTCATGTTCGACTACACCTTACACATCCGGGGTCTACAACCACACCCCCTGTAG
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| Protein seq | MPLHRSAAIRSAVDGHICLVLIMLFLISTKLAADQPLAAAEPIARSCHDCGGVQIPYPFGVSSSGCAMAPSFEVDCNDTGNGVSKPFVGNIEVVSLGNGQARVMNHVSSSCYNRTSRQMNPADVWYLNLTGTPYRLSDSANKFTVIGCRTLAYTFDDYNVGKYMSGCVSVCRRGDLSSAINGSCVGIGCCQTNITTGLSYYQVMFDYTLHIRGLQPHPL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g30250 | LOC_Os04g30250.2 | Chr04 | 18053116 | 18057610 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCTCTCCACAGAAGTGCAGCTATCCGCAGCGCAGTCGATGGACATATTTGCCTAGTACTAATAATGCTATTTCTCATCAGTACAAAGCTTGCTGCTGATCAGCCCCTCGCGGCGGCTGAGCCAATCGCCCGATCATGCCACGACTGCGGCGGTGTACAGATCCCATACCCGTTCGGCGTCAGCTCAAGCGGCTGCGCCATGGCGCCTAGCTTCGAAGTCGACTGCAACGACACGGGGAACGGCGTCTCCAAGCCGTTCGTTGGAAACATCGAGGTCGTCTCCCTCGGCAATGGTCAGGCCCGGGTAATGAATCACGTATCTTCTTCCTGCTACAACCGCACGTCCCGACAGATGAACCCTGCGGACGTGTGGTATCTGAACCTCACGGGCACGCCCTACAGGCTCTCCGACTCGGCCAACAAGTTCACGGTCATCGGGTGCCGGACGCTGGCCTACACCTTCGACGATTACAACGTGGGCAAGTACATGAGCGGGTGCGTGTCCGTCTGCCGGCGAGGTGACTTGAGCAGCGCCATCAACGGCAGCTGCGTCGGGATAGGCTGCTGCCAGACAAACATCACGACGGGTCTAAGCTATTATCAGGTCATGTTCGACTACACCTTACACATCCGGGGTCTACAACCACACCCCCTGTAG
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| Protein seq | MPLHRSAAIRSAVDGHICLVLIMLFLISTKLAADQPLAAAEPIARSCHDCGGVQIPYPFGVSSSGCAMAPSFEVDCNDTGNGVSKPFVGNIEVVSLGNGQARVMNHVSSSCYNRTSRQMNPADVWYLNLTGTPYRLSDSANKFTVIGCRTLAYTFDDYNVGKYMSGCVSVCRRGDLSSAINGSCVGIGCCQTNITTGLSYYQVMFDYTLHIRGLQPHPL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g30250 | LOC_Os04g30250.3 | Chr04 | 18053116 | 18057610 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCTCTCCACAGAAGTGCAGCTATCCGCAGCGCAGTCGATGGACATATTTGCCTAGTACTAATAATGCTATTTCTCATCAGTACAAAGCTTGCTGCTGATCAGCCCCTCGCGGCGGCTGAGCCAATCGCCCGATCATGCCACGACTGCGGCGGTGTACAGATCCCATACCCGTTCGGCGTCAGCTCAAGCGGCTGCGCCATGGCGCCTAGCTTCGAAGTCGACTGCAACGACACGGGGAACGGCGTCTCCAAGCCGTTCGTTGGAAACATCGAGGTCGTCTCCCTCGGCAATGGTCAGGCCCGGGCTCTCCGACTCGGCCAACAAGTTCACGGTCATCGGGTGCCGGACGCTGGCCTACACCTTCGACGATTACAACGTGGGCAAGTACATGAGCGGGTGCGTGTCCGTCTGCCGGCGAGGTGA
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| Protein seq | MPLHRSAAIRSAVDGHICLVLIMLFLISTKLAADQPLAAAEPIARSCHDCGGVQIPYPFGVSSSGCAMAPSFEVDCNDTGNGVSKPFVGNIEVVSLGNGQARALRLGQQVHGHRVPDAGLHLRRLQRGQVHERVRVRLPAR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.451409 | 1.094876 | 0.472126 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0371000 | RBH | 1.467411 | 3.316860 | 3.718253 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g30240 | RBH | 0.125520 | 0.000000 | 0.292918 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0371000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0010090 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010850 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010570 | SBH | 1.495480 | 0.0 | 0.526729 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0010250 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0010490 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0293100 | SBH | 0 | 0.053278 | 0.0232095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0009910 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0284400 | RBH | 0.2327105 | 2.572016 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0010210 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0010100 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0010160 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0010660 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0010420 | RBH | 0.000000 | 0.255983 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G009550 | SBH | 0.057031 | 0.082531 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0009580 | SBH | 0.0 | 5.172986 | 0.0 |
