Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0356600 | OGI:04054020 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:17044349-17046921 | ||||||||
| Gene Symbol | SDRLK-25 | ||||||||||
| DNA seq | ACGTATTCATCGGGCTGCTTCTCCTCTCCCTGCACGCTCCTCCATATTCCGCTGCCGTCGACGATACTCTCGCAGCGGGTCAAGTGCTCGCCGTCGGTGAGAAGCTCGTCTCGAGGAACGGCAAGTTCGCGCTCGGCTTCTTCCAGCCAAGTGCAATAGCCATCAGTAAGTCATCCAACTACACTAACGCCCTCGGTTGGTACCTTGCCATTTGGTTCAACAAGATCCCGGTTTTCACCACTGTATGGGTCGCCAATAGGGAGAGGCCAATCACCGTTCCTCGGCTCAATTCAACATGGCTAAAAATGTCAGGAGATGGCAACCTCTACATCCTAGACCATGCCACTAATTCCATCATCTGGTCCACTGATCACGTCGTTAATACGACAACGGAAACCGGCATGAACACGAGTGCCACTCTCCTGAATAGCGGAAACCTCGTAATACGAAACCCGTCAGGTGTAGTCTCGTGGCAGAGCTTCGACAACCCAACTGACGTTGTTCTTCCCGGTGCCAAGTTTGGCTGGAACAAGGCCACTGGGTTGAATCGCCTTGGGATATCAAAGAAGAGCCTCATCGATCCAGGCCTTGGATCATACAGTGTTGAACTAGACACGACTGGTGCCAGAGGGCTGATCCTCAAGCATCGCAACCCTTCCATGGAGTACTGGTCATCTGATAGAGCACTGATTATACCGGTACTTAAGTCTTTGTTTGAGATGGATCCACGGACCAGAGGCTTGATTACCCCGGCATACGTCGATAATAGTGAAGAGGAGTACTATATCTACACTATGTCGGATGAATCATCCTCTGTGTTTGTGTCGTTAGATGTTAATGGGCAGATCAAGATGTATGTATGGTCACGAGCAAACCAGTCTTGGCAAAGCATATATGCACAGCCTGTTGATCCTTGCACCCCCTCTGCTACCTGTGGACCTTTCACCATCTGCAATGGTAATTCCACTCAAACATGTGACTGTATGGAGAGTTTTTCTGTGAAGTCACTGTGGGATTGGGAGCTTGATGATAGAACAGGAGGGTGCATCAGAGATACCCCATTGCATTGTGTAAGTGACAAAAACATGACAAGTTCAACTGACATGTTCCAACCTATAGGTCTTGTTACATTGCCCTATGACCCCCAAATTATGCAAGATGCTACAACTCAGGGTGAATGTGCACAAGCTTGTCTCAGTGATTGCTCTTGCACAGCTTATTCTTATCAAAATAGTAGATGCTCTGTCTGGCATGGGAAATTACTTAATGTAAATAAAAATGATGGCATTTACATTAATGCGGACAATGTTCTGCACCTTCGTCTTGCTGCCACAGATTTCCAAGATTTGAGTAAAAACAAAAGAAAAACAAATGTTGAACTTGTTGTGGGCGCAAGCATTGTTAGTTTTGTGTTAGCATTGATCATGATACTGCTAATGATTAGAGGGAACAAATTCAAGTGTTGTGGTGCACCATTCCATGACAATGAAGGCCGTGGTGGAATAATAGCCTTTCGATACACTGATTTAGCTCATGCTACTAAAAACTTCTCGGAAAAATTAGGAGCAGGTGGGTTTGGCTCAGTATTCAAAGGAGTGTTAACTAACATGGCTACCATAGCAGTGAAAAAGCTTGATGGTGCCCATCAAGGTGAGAAGCAATTTAGAGCTGAGGTGAGCTCCATTGGAATTATCCAACATATCAACTTAGTCAAATTGATCGGCTATTGTTGTGAGGGTGATAAGAGATTGCTGGTATATGAACACATGTTAAATGGTTCTCTTGATGTTCATCTATTTCAGAGCCATGCAGCTGTCCTAAATTGGATTACCATGCACCAAATAGCCATAGGAGTTGCTAGAGGATTGTCTTACTTGCATGAGAGTTGTCGTGAATGCATCATACATTGTGACATTAAACCAGAAAACATACTTCTCGATATATCATATTTTCCAAAACTTGCAGACTTTGGGATGGCAACATTTGTAGGAAGAGATTTTAGCCGAGTTCTAACTACTTTTAGAGGAACTGTAGGGTATCTTGCACCAGAGTGGATTAGCGGAGTTGCTATTACTCCAAAAGTTGATGTTTACAGCTTTGGTATGGTGCTATTTGAAATCATATCGGGAAGGAGGAATTCTCCTGAAGTACACACTAGTGGTAATTATGATGCTACTTATTTCCCTGTGCGAGCGATTAATAAGCTGCATGAGGGAGACATGAGTAGTTTAGTGGACCCAAGATTACATGGTGACTACAATTTGGATGAGGTTGTCAGGGTCTGCAAAGTTGCTTGTTGGTGTATCCAAGATGATGAGTTCGATCGGCCCACAATGCGTGAAGTGGTCCGGGTTCTTGAGGGTCTACAAGAGCTTGATATGCCCCCAATGCCAAGGCTACTTGCGACTTTAACAAACTTCTCTGCTGTGGCTTCAATGTAATTGTGTTTTCTTCTACTTTCTGCAAATTATAATTCTACATGGAAAACATTGATAAAGAAAACATGGTTATACTTGCTAAATTATATCTTTTTATTTAATTGATGGCTGCTTATGGTAAGCAAGTATTGTATC
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| CDS seq | GTATTCATCGGGCTGCTTCTCCTCTCCCTGCACGCTCCTCCATATTCCGCTGCCGTCGACGATACTCTCGCAGCGGGTCAAGTGCTCGCCGTCGGTGAGAAGCTCGTCTCGAGGAACGGCAAGTTCGCGCTCGGCTTCTTCCAGCCAAGTGCAATAGCCATCAGTAAGTCATCCAACTACACTAACGCCCTCGGTTGGTACCTTGCCATTTGGTTCAACAAGATCCCGGTTTTCACCACTGTATGGGTCGCCAATAGGGAGAGGCCAATCACCGTTCCTCGGCTCAATTCAACATGGCTAAAAATGTCAGGAGATGGCAACCTCTACATCCTAGACCATGCCACTAATTCCATCATCTGGTCCACTGATCACGTCGTTAATACGACAACGGAAACCGGCATGAACACGAGTGCCACTCTCCTGAATAGCGGAAACCTCGTAATACGAAACCCGTCAGGTGTAGTCTCGTGGCAGAGCTTCGACAACCCAACTGACGTTGTTCTTCCCGGTGCCAAGTTTGGCTGGAACAAGGCCACTGGGTTGAATCGCCTTGGGATATCAAAGAAGAGCCTCATCGATCCAGGCCTTGGATCATACAGTGTTGAACTAGACACGACTGGTGCCAGAGGGCTGATCCTCAAGCATCGCAACCCTTCCATGGAGTACTGGTCATCTGATAGAGCACTGATTATACCGGTACTTAAGTCTTTGTTTGAGATGGATCCACGGACCAGAGGCTTGATTACCCCGGCATACGTCGATAATAGTGAAGAGGAGTACTATATCTACACTATGTCGGATGAATCATCCTCTGTGTTTGTGTCGTTAGATGTTAATGGGCAGATCAAGATGTATGTATGGTCACGAGCAAACCAGTCTTGGCAAAGCATATATGCACAGCCTGTTGATCCTTGCACCCCCTCTGCTACCTGTGGACCTTTCACCATCTGCAATGGTAATTCCACTCAAACATGTGACTGTATGGAGAGTTTTTCTGTGAAGTCACTGTGGGATTGGGAGCTTGATGATAGAACAGGAGGGTGCATCAGAGATACCCCATTGCATTGTGTAAGTGACAAAAACATGACAAGTTCAACTGACATGTTCCAACCTATAGGTCTTGTTACATTGCCCTATGACCCCCAAATTATGCAAGATGCTACAACTCAGGGTGAATGTGCACAAGCTTGTCTCAGTGATTGCTCTTGCACAGCTTATTCTTATCAAAATAGTAGATGCTCTGTCTGGCATGGGAAATTACTTAATGTAAATAAAAATGATGGCATTTACATTAATGCGGACAATGTTCTGCACCTTCGTCTTGCTGCCACAGATTTCCAAGATTTGAGTAAAAACAAAAGAAAAACAAATGTTGAACTTGTTGTGGGCGCAAGCATTGTTAGTTTTGTGTTAGCATTGATCATGATACTGCTAATGATTAGAGGGAACAAATTCAAGTGTTGTGGTGCACCATTCCATGACAATGAAGGCCGTGGTGGAATAATAGCCTTTCGATACACTGATTTAGCTCATGCTACTAAAAACTTCTCGGAAAAATTAGGAGCAGGTGGGTTTGGCTCAGTATTCAAAGGAGTGTTAACTAACATGGCTACCATAGCAGTGAAAAAGCTTGATGGTGCCCATCAAGGTGAGAAGCAATTTAGAGCTGAGGTGAGCTCCATTGGAATTATCCAACATATCAACTTAGTCAAATTGATCGGCTATTGTTGTGAGGGTGATAAGAGATTGCTGGTATATGAACACATGTTAAATGGTTCTCTTGATGTTCATCTATTTCAGAGCCATGCAGCTGTCCTAAATTGGATTACCATGCACCAAATAGCCATAGGAGTTGCTAGAGGATTGTCTTACTTGCATGAGAGTTGTCGTGAATGCATCATACATTGTGACATTAAACCAGAAAACATACTTCTCGATATATCATATTTTCCAAAACTTGCAGACTTTGGGATGGCAACATTTGTAGGAAGAGATTTTAGCCGAGTTCTAACTACTTTTAGAGGAACTGTAGGGTATCTTGCACCAGAGTGGATTAGCGGAGTTGCTATTACTCCAAAAGTTGATGTTTACAGCTTTGGTATGGTGCTATTTGAAATCATATCGGGAAGGAGGAATTCTCCTGAAGTACACACTAGTGGTAATTATGATGCTACTTATTTCCCTGTGCGAGCGATTAATAAGCTGCATGAGGGAGACATGAGTAGTTTAGTGGACCCAAGATTACATGGTGACTACAATTTGGATGAGGTTGTCAGGGTCTGCAAAGTTGCTTGTTGGTGTATCCAAGATGATGAGTTCGATCGGCCCACAATGCGTGAAGTGGTCCGGGTTCTTGAGGGTCTACAAGAGCTTGATATGCCCCCAATGCCAAGGCTACTTGCGACTTTAACAAACTTCTCTGCTGTGGCTTCAATGTAA
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| Protein seq | VFIGLLLLSLHAPPYSAAVDDTLAAGQVLAVGEKLVSRNGKFALGFFQPSAIAISKSSNYTNALGWYLAIWFNKIPVFTTVWVANRERPITVPRLNSTWLKMSGDGNLYILDHATNSIIWSTDHVVNTTTETGMNTSATLLNSGNLVIRNPSGVVSWQSFDNPTDVVLPGAKFGWNKATGLNRLGISKKSLIDPGLGSYSVELDTTGARGLILKHRNPSMEYWSSDRALIIPVLKSLFEMDPRTRGLITPAYVDNSEEEYYIYTMSDESSSVFVSLDVNGQIKMYVWSRANQSWQSIYAQPVDPCTPSATCGPFTICNGNSTQTCDCMESFSVKSLWDWELDDRTGGCIRDTPLHCVSDKNMTSSTDMFQPIGLVTLPYDPQIMQDATTQGECAQACLSDCSCTAYSYQNSRCSVWHGKLLNVNKNDGIYINADNVLHLRLAATDFQDLSKNKRKTNVELVVGASIVSFVLALIMILLMIRGNKFKCCGAPFHDNEGRGGIIAFRYTDLAHATKNFSEKLGAGGFGSVFKGVLTNMATIAVKKLDGAHQGEKQFRAEVSSIGIIQHINLVKLIGYCCEGDKRLLVYEHMLNGSLDVHLFQSHAAVLNWITMHQIAIGVARGLSYLHESCRECIIHCDIKPENILLDISYFPKLADFGMATFVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGMVLFEIISGRRNSPEVHTSGNYDATYFPVRAINKLHEGDMSSLVDPRLHGDYNLDEVVRVCKVACWCIQDDEFDRPTMREVVRVLEGLQELDMPPMPRLLATLTNFSAVASM |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0356600 | OsNip_04t0356600-01 | Chr04 | 17044349 | 17046921 | + | RAP2018-11-26 | ||
| CDS seq | GTATTCATCGGGCTGCTTCTCCTCTCCCTGCACGCTCCTCCATATTCCGCTGCCGTCGACGATACTCTCGCAGCGGGTCAAGTGCTCGCCGTCGGTGAGAAGCTCGTCTCGAGGAACGGCAAGTTCGCGCTCGGCTTCTTCCAGCCAAGTGCAATAGCCATCAGTAAGTCATCCAACTACACTAACGCCCTCGGTTGGTACCTTGCCATTTGGTTCAACAAGATCCCGGTTTTCACCACTGTATGGGTCGCCAATAGGGAGAGGCCAATCACCGTTCCTCGGCTCAATTCAACATGGCTAAAAATGTCAGGAGATGGCAACCTCTACATCCTAGACCATGCCACTAATTCCATCATCTGGTCCACTGATCACGTCGTTAATACGACAACGGAAACCGGCATGAACACGAGTGCCACTCTCCTGAATAGCGGAAACCTCGTAATACGAAACCCGTCAGGTGTAGTCTCGTGGCAGAGCTTCGACAACCCAACTGACGTTGTTCTTCCCGGTGCCAAGTTTGGCTGGAACAAGGCCACTGGGTTGAATCGCCTTGGGATATCAAAGAAGAGCCTCATCGATCCAGGCCTTGGATCATACAGTGTTGAACTAGACACGACTGGTGCCAGAGGGCTGATCCTCAAGCATCGCAACCCTTCCATGGAGTACTGGTCATCTGATAGAGCACTGATTATACCGGTACTTAAGTCTTTGTTTGAGATGGATCCACGGACCAGAGGCTTGATTACCCCGGCATACGTCGATAATAGTGAAGAGGAGTACTATATCTACACTATGTCGGATGAATCATCCTCTGTGTTTGTGTCGTTAGATGTTAATGGGCAGATCAAGATGTATGTATGGTCACGAGCAAACCAGTCTTGGCAAAGCATATATGCACAGCCTGTTGATCCTTGCACCCCCTCTGCTACCTGTGGACCTTTCACCATCTGCAATGGTAATTCCACTCAAACATGTGACTGTATGGAGAGTTTTTCTGTGAAGTCACTGTGGGATTGGGAGCTTGATGATAGAACAGGAGGGTGCATCAGAGATACCCCATTGCATTGTGTAAGTGACAAAAACATGACAAGTTCAACTGACATGTTCCAACCTATAGGTCTTGTTACATTGCCCTATGACCCCCAAATTATGCAAGATGCTACAACTCAGGGTGAATGTGCACAAGCTTGTCTCAGTGATTGCTCTTGCACAGCTTATTCTTATCAAAATAGTAGATGCTCTGTCTGGCATGGGAAATTACTTAATGTAAATAAAAATGATGGCATTTACATTAATGCGGACAATGTTCTGCACCTTCGTCTTGCTGCCACAGATTTCCAAGATTTGAGTAAAAACAAAAGAAAAACAAATGTTGAACTTGTTGTGGGCGCAAGCATTGTTAGTTTTGTGTTAGCATTGATCATGATACTGCTAATGATTAGAGGGAACAAATTCAAGTGTTGTGGTGCACCATTCCATGACAATGAAGGCCGTGGTGGAATAATAGCCTTTCGATACACTGATTTAGCTCATGCTACTAAAAACTTCTCGGAAAAATTAGGAGCAGGTGGGTTTGGCTCAGTATTCAAAGGAGTGTTAACTAACATGGCTACCATAGCAGTGAAAAAGCTTGATGGTGCCCATCAAGGTGAGAAGCAATTTAGAGCTGAGGTGAGCTCCATTGGAATTATCCAACATATCAACTTAGTCAAATTGATCGGCTATTGTTGTGAGGGTGATAAGAGATTGCTGGTATATGAACACATGTTAAATGGTTCTCTTGATGTTCATCTATTTCAGAGCCATGCAGCTGTCCTAAATTGGATTACCATGCACCAAATAGCCATAGGAGTTGCTAGAGGATTGTCTTACTTGCATGAGAGTTGTCGTGAATGCATCATACATTGTGACATTAAACCAGAAAACATACTTCTCGATATATCATATTTTCCAAAACTTGCAGACTTTGGGATGGCAACATTTGTAGGAAGAGATTTTAGCCGAGTTCTAACTACTTTTAGAGGAACTGTAGGGTATCTTGCACCAGAGTGGATTAGCGGAGTTGCTATTACTCCAAAAGTTGATGTTTACAGCTTTGGTATGGTGCTATTTGAAATCATATCGGGAAGGAGGAATTCTCCTGAAGTACACACTAGTGGTAATTATGATGCTACTTATTTCCCTGTGCGAGCGATTAATAAGCTGCATGAGGGAGACATGAGTAGTTTAGTGGACCCAAGATTACATGGTGACTACAATTTGGATGAGGTTGTCAGGGTCTGCAAAGTTGCTTGTTGGTGTATCCAAGATGATGAGTTCGATCGGCCCACAATGCGTGAAGTGGTCCGGGTTCTTGAGGGTCTACAAGAGCTTGATATGCCCCCAATGCCAAGGCTACTTGCGACTTTAACAAACTTCTCTGCTGTGGCTTCAATGTAA
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| Protein seq | VFIGLLLLSLHAPPYSAAVDDTLAAGQVLAVGEKLVSRNGKFALGFFQPSAIAISKSSNYTNALGWYLAIWFNKIPVFTTVWVANRERPITVPRLNSTWLKMSGDGNLYILDHATNSIIWSTDHVVNTTTETGMNTSATLLNSGNLVIRNPSGVVSWQSFDNPTDVVLPGAKFGWNKATGLNRLGISKKSLIDPGLGSYSVELDTTGARGLILKHRNPSMEYWSSDRALIIPVLKSLFEMDPRTRGLITPAYVDNSEEEYYIYTMSDESSSVFVSLDVNGQIKMYVWSRANQSWQSIYAQPVDPCTPSATCGPFTICNGNSTQTCDCMESFSVKSLWDWELDDRTGGCIRDTPLHCVSDKNMTSSTDMFQPIGLVTLPYDPQIMQDATTQGECAQACLSDCSCTAYSYQNSRCSVWHGKLLNVNKNDGIYINADNVLHLRLAATDFQDLSKNKRKTNVELVVGASIVSFVLALIMILLMIRGNKFKCCGAPFHDNEGRGGIIAFRYTDLAHATKNFSEKLGAGGFGSVFKGVLTNMATIAVKKLDGAHQGEKQFRAEVSSIGIIQHINLVKLIGYCCEGDKRLLVYEHMLNGSLDVHLFQSHAAVLNWITMHQIAIGVARGLSYLHESCRECIIHCDIKPENILLDISYFPKLADFGMATFVGRDFSRVLTTFRGTVGYLAPEWISGVAITPKVDVYSFGMVLFEIISGRRNSPEVHTSGNYDATYFPVRAINKLHEGDMSSLVDPRLHGDYNLDEVVRVCKVACWCIQDDEFDRPTMREVVRVLEGLQELDMPPMPRLLATLTNFSAVASM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0369066 | RBH | 0.000000 | 0.0 | 0.328228 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28780 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0356600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009500 | RBH | 0.0 | 5.051953 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0010250 | RBH | 0.0 | 0.805451 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010050 | RBH | 0.0 | 2.147843 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013320 | SBH | 0.019342 | 0.033247 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009850 | RBH | 0.0 | 0.000000 | 1.254305 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0269500 | RBH | 0.281394 | 15.242077 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008970 | RBH | 0.0 | 0.349750 | 0.100444 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0266000 | RBH | 0.3321935 | 11.7831555 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009560 | RBH | 0.0 | 0.259812 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0009140 | RBH | 0.0 | 5.600975 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0009200 | RBH | 0.0 | 5.760810 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0009710 | RBH | 0.0 | 0.476757 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009820 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012670 | SBH | 0.284199 | 0.643363 | 0.235737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012660 | SBH | 0.428041 | 1.303368 | 1.550173 |
