Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0303100 | OGI:04045230 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:13552826-13555333 | ||||||||
| Gene Symbol | SDRLK-24, RLCK139, OsRLCK139 | ||||||||||
| DNA seq | TCATCTTGGACCAGATAGTATTGATTCTTGAGGTGGAGCCGAATATGTAGATGGGTTGCCTTGAGCAGATATTACTGAATTTGCATTGAAAAAACTGTAATCTAGGCAGTTCTCCACGCTCATTGCACCTTCCAATACCTTGACAACCATTGACATAGAAGGCCTCCGGCTGCTGTCATTCTGCAAGCACCACATTGCAAGCTTCATCATTTGAATCACTTCCTCCTGGTGTGACACCATGTCATTACTGTGCTTATCAATCATATCAAGCAACTGATCGTTTTGAGCCTTTTCTCGTAATAGGTTGATGAGCTGAACACTCTCCTCGGGCTGTGAGAGATCAATATTTTTCCTTCCACTTATTATTTCCATGAGAACAACTCCAAAGCTGTATATATCAACTTTTTCAGTGATCTGCGATGTTAACCATTCAGGTGCCAGATATCCAGGTGTGCCTCTCATCACTGTCACTACCTTGCTTTGATCCCTGTCTATTAGCTTGGAAAGTCCAAAGTCAGCCAATTTAGCATTGAAATTCTCGTCTAAAAGAATATTCTGTGGTTTGATATCCAGATGAGCAATTTTTCGCCTGCATTCCTCATGAAGATAACATAAACCCTTGGCAATATCCATAATGATCTTACACCTTGTGCACCAATCAAGAGGAGCATTGTTGTGGCGGTAATATATCCACCTATCAAGTGACCCTCTTGGCATATATTCATATACCAGAAGCCTATTTGATTTCTCTGCGCAAAATCCAATTAGCCTGACAAGATTGATGTGCTCAATGCTGCCAATAGTCTCGACCTCTGCCAAGAACTCCTTCTTTCCCTGTCTAGCACCTTCCAGACGTTTCACCGCTACACTCTCTTCACCTATTTTTCCTTCGAAGACCGATCCAAATCCACCTTCGCCAAGCTTTTTACTGAAATCTTCGGTGCATTCTCTTAACTTTTCAAAAGAGAACCGCGTTGGCATTCCAGGCAATATATCAAATTCTAATTCTTCATCTAGTTCTTGATACTTCCTCCTCCTTCGTACATATATAGCAACAATAACAACTAAAACAAGAGTAGTAATTGCTGCAAGTGTAGCACCTAAAATTGTCTTCAATTTTTTTTGTGTAGGGTCAGAAGAGGGAGTAATCTGTACCTTTAGATAAGCTGAAGAGTTGTAATTAACCTTTTCAGGTTGTATTGACTGCAAGGAGAATACCTCTGTCACTGACCGGCATTCTCCATTGGAATCATTCTGACCATACCTGAACGCTACTGCTTTGCATGAGCAATTCTTCAAGCAGGCTTGCTTGCAGTCATCTCTATTTTTTGCATTCATGATGATTTGGCTCATATCAAAGTAAGAAACATCAGTAAGAGTCAAGAGCTGATGATTTTTGATTTCTTGACAAGATACTGGTGTCACTGGTGCACAACCAAGATTAGTCTTCCGCTCGTCAACTAGCTGGAAGTAACGTGAACTAGAATTACTCTGAAAGGGACAGATGCATTGCCCACTTGTGCATATCCCGTACTCCCCGCACACTGTTGGGAAAGCACAATCATCAACATGTAGGAATTCCTTCATTACATCAGACACCATGATCCAGCTTGGTTCTCCACGAGACCACTCAAACAGCCTCAAGTGCCCATCAGACTCTAACCTTATGTACTGGGTGGACTTAGCTTCTTGGAATTGGATACTTTCATCTGGATTTCCTGGATGTGTGGACTGCAAAAAGATGCTGAGGCTGCCATTTGTAAAGGTAATCCTTGTTGGATCTCTCTGGCTCATGTTTCTGCTCAGCTCATGCTTAAAGTATAGTTGTGGTGGTGTGGATTCAACATAACCATGTACACCATCACGGAGAACAGTTATATATATCTTACCCTCAGTCCAATTTGTGGGGGAGGCATTTGCTCTGAGCATCTTGCCCTGCAGCAGTGACTGCCCTGGGACCAATGCGTCGGTGGGATGATCAAATGACTGCCACACTGTCATGTTCCTCTGACCAAACAGCACAAGGTTGCCTTGCTCAGTGATCTCCATGCGTCGCACGGATTGGTCTGAAGTGCCGCTCGACCAGATGAGTCTGCCATTGGCTTTTTCACGGAGGACCAGGTCGCCATCTCCAGTCAGCTCAAGGGTAGCATTCTCTCCTACAGGGCTTGCCTGGTTGGCACACCAGACAACCCGTGCCATTTTATTTACCGGGAAAGAATCTGTGTCAGGGAAAATGAAGACTGCGAAGATGAATTCTTGGCAGGGTGGGGTGCAGAAGAACCCTGCGGCAAATGAGAGATCGGAGGTTTGTGGTGATCGGAGGACTATGGCACGTACCAACCCATCTTCATATGGGACGCTGTCAAGGACTTTGTTTTTGACCCACAGTGTCGAGAGGTTGGCACTGGGATAGACGGAGCGCTGCCCGGACACCGGTGGTGCGGCAACTGCGAGCACCACGACCACCAGCACCGTGAAGTCGGCGAAGAGATTTCCAGGAGACAT
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| CDS seq | ATGTCTCCTGGAAATCTCTTCGCCGACTTCACGGTGCTGGTGGTCGTGGTGCTCGCAGTTGCCGCACCACCGGTGTCCGGGCAGCGCTCCGTCTATCCCAGTGCCAACCTCTCGACACTGTGGGTCAAAAACAAAGTCCTTGACAGCGTCCCATATGAAGATGGGTTGGTACGTGCCATAGTCCTCCGATCACCACAAACCTCCGATCTCTCATTTGCCGCAGGGTTCTTCTGCACCCCACCCTGCCAAGAATTCATCTTCGCAGTCTTCATTTTCCCTGACACAGATTCTTTCCCGGTAAATAAAATGGCACGGGTTGTCTGGTGTGCCAACCAGGCAAGCCCTGTAGGAGAGAATGCTACCCTTGAGCTGACTGGAGATGGCGACCTGGTCCTCCGTGAAAAAGCCAATGGCAGACTCATCTGGTCGAGCGGCACTTCAGACCAATCCGTGCGACGCATGGAGATCACTGAGCAAGGCAACCTTGTGCTGTTTGGTCAGAGGAACATGACAGTGTGGCAGTCATTTGATCATCCCACCGACGCATTGGTCCCAGGGCAGTCACTGCTGCAGGGCAAGATGCTCAGAGCAAATGCCTCCCCCACAAATTGGACTGAGGGTAAGATATATATAACTGTTCTCCGTGATGGTGTACATGGTTATGTTGAATCCACACCACCACAACTATACTTTAAGCATGAGCTGAGCAGAAACATGAGCCAGAGAGATCCAACAAGGATTACCTTTACAAATGGCAGCCTCAGCATCTTTTTGCAGTCCACACATCCAGGAAATCCAGATGAAAGTATCCAATTCCAAGAAGCTAAGTCCACCCAGTACATAAGGTTAGAGTCTGATGGGCACTTGAGGCTGTTTGAGTGGTCTCGTGGAGAACCAAGCTGGATCATGGTGTCTGATGTAATGAAGGAATTCCTACATGTTGATGATTGTGCTTTCCCAACAGTGTGCGGGGAGTACGGGATATGCACAAGTGGGCAATGCATCTGTCCCTTTCAGAGTAATTCTAGTTCACGTTACTTCCAGCTAGTTGACGAGCGGAAGACTAATCTTGGTTGTGCACCAGTGACACCAGTATCTTGTCAAGAAATCAAAAATCATCAGCTCTTGACTCTTACTGATGTTTCTTACTTTGATATGAGCCAAATCATCATGAATGCAAAAAATAGAGATGACTGCAAGCAAGCCTGCTTGAAGAATTGCTCATGCAAAGCAGTAGCGTTCAGGTATGGTCAGAATGATTCCAATGGAGAATGCCGGTCAGTGACAGAGGTATTCTCCTTGCAGTCAATACAACCTGAAAAGGTTAATTACAACTCTTCAGCTTATCTAAAGGTACAGATTACTCCCTCTTCTGACCCTACACAAAAAAAATTGAAGACAATTTTAGGTGCTACACTTGCAGCAATTACTACTCTTGTTTTAGTTGTTATTGTTGCTATATATGTACGAAGGAGGAGGAAGTATCAAGAACTAGATGAAGAATTAGAATTTGATATATTGCCTGGAATGCCAACGCGGTTCTCTTTTGAAAAGTTAAGAGAATGCACCGAAGATTTCAGTAAAAAGCTTGGCGAAGGTGGATTTGGATCGGTCTTCGAAGGAAAAATAGGTGAAGAGAGTGTAGCGGTGAAACGTCTGGAAGGTGCTAGACAGGGAAAGAAGGAGTTCTTGGCAGAGGTCGAGACTATTGGCAGCATTGAGCACATCAATCTTGTCAGGCTAATTGGATTTTGCGCAGAGAAATCAAATAGGCTTCTGGTATATGAATATATGCCAAGAGGGTCACTTGATAGGTGGATATATTACCGCCACAACAATGCTCCTCTTGATTGGTGCACAAGGTGTAAGATCATTATGGATATTGCCAAGGGTTTATGTTATCTTCATGAGGAATGCAGGCGAAAAATTGCTCATCTGGATATCAAACCACAGAATATTCTTTTAGACGAGAATTTCAATGCTAAATTGGCTGACTTTGGACTTTCCAAGCTAATAGACAGGGATCAAAGCAAGGTAGTGACAGTGATGAGAGGCACACCTGGATATCTGGCACCTGAATGGTTAACATCGCAGATCACTGAAAAAGTTGATATATACAGCTTTGGAGTTGTTCTCATGGAAATAATAAGTGGAAGGAAAAATATTGATCTCTCACAGCCCGAGGAGAGTGTTCAGCTCATCAACCTATTACGAGAAAAGGCTCAAAACGATCAGTTGCTTGATATGATTGATAAGCACAGTAATGACATGGTGTCACACCAGGAGGAAGTGATTCAAATGATGAAGCTTGCAATGTGGTGCTTGCAGAATGACAGCAGCCGGAGGCCTTCTATGTCAATGGTTGTCAAGGTATTGGAAGGTGCAATGAGCGTGGAGAACTGCCTAGATTACAGTTTTTTCAATGCAAATTCAGTAATATCTGCTCAAGGCAACCCATCTACATATTCGGCTCCACCTCAAGAATCAATACTATCTGGTCCAAGATGA
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| Protein seq | MSPGNLFADFTVLVVVVLAVAAPPVSGQRSVYPSANLSTLWVKNKVLDSVPYEDGLVRAIVLRSPQTSDLSFAAGFFCTPPCQEFIFAVFIFPDTDSFPVNKMARVVWCANQASPVGENATLELTGDGDLVLREKANGRLIWSSGTSDQSVRRMEITEQGNLVLFGQRNMTVWQSFDHPTDALVPGQSLLQGKMLRANASPTNWTEGKIYITVLRDGVHGYVESTPPQLYFKHELSRNMSQRDPTRITFTNGSLSIFLQSTHPGNPDESIQFQEAKSTQYIRLESDGHLRLFEWSRGEPSWIMVSDVMKEFLHVDDCAFPTVCGEYGICTSGQCICPFQSNSSSRYFQLVDERKTNLGCAPVTPVSCQEIKNHQLLTLTDVSYFDMSQIIMNAKNRDDCKQACLKNCSCKAVAFRYGQNDSNGECRSVTEVFSLQSIQPEKVNYNSSAYLKVQITPSSDPTQKKLKTILGATLAAITTLVLVVIVAIYVRRRRKYQELDEELEFDILPGMPTRFSFEKLRECTEDFSKKLGEGGFGSVFEGKIGEESVAVKRLEGARQGKKEFLAEVETIGSIEHINLVRLIGFCAEKSNRLLVYEYMPRGSLDRWIYYRHNNAPLDWCTRCKIIMDIAKGLCYLHEECRRKIAHLDIKPQNILLDENFNAKLADFGLSKLIDRDQSKVVTVMRGTPGYLAPEWLTSQITEKVDIYSFGVVLMEIISGRKNIDLSQPEESVQLINLLREKAQNDQLLDMIDKHSNDMVSHQEEVIQMMKLAMWCLQNDSSRRPSMSMVVKVLEGAMSVENCLDYSFFNANSVISAQGNPSTYSAPPQESILSGPR |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [UniProtKB/Swiss-Prot:Q8RWZ5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0303100 | OsNip_04t0303100-00 | Chr04 | 13552826 | 13555333 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCTCCTGGAAATCTCTTCGCCGACTTCACGGTGCTGGTGGTCGTGGTGCTCGCAGTTGCCGCACCACCGGTGTCCGGGCAGCGCTCCGTCTATCCCAGTGCCAACCTCTCGACACTGTGGGTCAAAAACAAAGTCCTTGACAGCGTCCCATATGAAGATGGGTTGGTACGTGCCATAGTCCTCCGATCACCACAAACCTCCGATCTCTCATTTGCCGCAGGGTTCTTCTGCACCCCACCCTGCCAAGAATTCATCTTCGCAGTCTTCATTTTCCCTGACACAGATTCTTTCCCGGTAAATAAAATGGCACGGGTTGTCTGGTGTGCCAACCAGGCAAGCCCTGTAGGAGAGAATGCTACCCTTGAGCTGACTGGAGATGGCGACCTGGTCCTCCGTGAAAAAGCCAATGGCAGACTCATCTGGTCGAGCGGCACTTCAGACCAATCCGTGCGACGCATGGAGATCACTGAGCAAGGCAACCTTGTGCTGTTTGGTCAGAGGAACATGACAGTGTGGCAGTCATTTGATCATCCCACCGACGCATTGGTCCCAGGGCAGTCACTGCTGCAGGGCAAGATGCTCAGAGCAAATGCCTCCCCCACAAATTGGACTGAGGGTAAGATATATATAACTGTTCTCCGTGATGGTGTACATGGTTATGTTGAATCCACACCACCACAACTATACTTTAAGCATGAGCTGAGCAGAAACATGAGCCAGAGAGATCCAACAAGGATTACCTTTACAAATGGCAGCCTCAGCATCTTTTTGCAGTCCACACATCCAGGAAATCCAGATGAAAGTATCCAATTCCAAGAAGCTAAGTCCACCCAGTACATAAGGTTAGAGTCTGATGGGCACTTGAGGCTGTTTGAGTGGTCTCGTGGAGAACCAAGCTGGATCATGGTGTCTGATGTAATGAAGGAATTCCTACATGTTGATGATTGTGCTTTCCCAACAGTGTGCGGGGAGTACGGGATATGCACAAGTGGGCAATGCATCTGTCCCTTTCAGAGTAATTCTAGTTCACGTTACTTCCAGCTAGTTGACGAGCGGAAGACTAATCTTGGTTGTGCACCAGTGACACCAGTATCTTGTCAAGAAATCAAAAATCATCAGCTCTTGACTCTTACTGATGTTTCTTACTTTGATATGAGCCAAATCATCATGAATGCAAAAAATAGAGATGACTGCAAGCAAGCCTGCTTGAAGAATTGCTCATGCAAAGCAGTAGCGTTCAGGTATGGTCAGAATGATTCCAATGGAGAATGCCGGTCAGTGACAGAGGTATTCTCCTTGCAGTCAATACAACCTGAAAAGGTTAATTACAACTCTTCAGCTTATCTAAAGGTACAGATTACTCCCTCTTCTGACCCTACACAAAAAAAATTGAAGACAATTTTAGGTGCTACACTTGCAGCAATTACTACTCTTGTTTTAGTTGTTATTGTTGCTATATATGTACGAAGGAGGAGGAAGTATCAAGAACTAGATGAAGAATTAGAATTTGATATATTGCCTGGAATGCCAACGCGGTTCTCTTTTGAAAAGTTAAGAGAATGCACCGAAGATTTCAGTAAAAAGCTTGGCGAAGGTGGATTTGGATCGGTCTTCGAAGGAAAAATAGGTGAAGAGAGTGTAGCGGTGAAACGTCTGGAAGGTGCTAGACAGGGAAAGAAGGAGTTCTTGGCAGAGGTCGAGACTATTGGCAGCATTGAGCACATCAATCTTGTCAGGCTAATTGGATTTTGCGCAGAGAAATCAAATAGGCTTCTGGTATATGAATATATGCCAAGAGGGTCACTTGATAGGTGGATATATTACCGCCACAACAATGCTCCTCTTGATTGGTGCACAAGGTGTAAGATCATTATGGATATTGCCAAGGGTTTATGTTATCTTCATGAGGAATGCAGGCGAAAAATTGCTCATCTGGATATCAAACCACAGAATATTCTTTTAGACGAGAATTTCAATGCTAAATTGGCTGACTTTGGACTTTCCAAGCTAATAGACAGGGATCAAAGCAAGGTAGTGACAGTGATGAGAGGCACACCTGGATATCTGGCACCTGAATGGTTAACATCGCAGATCACTGAAAAAGTTGATATATACAGCTTTGGAGTTGTTCTCATGGAAATAATAAGTGGAAGGAAAAATATTGATCTCTCACAGCCCGAGGAGAGTGTTCAGCTCATCAACCTATTACGAGAAAAGGCTCAAAACGATCAGTTGCTTGATATGATTGATAAGCACAGTAATGACATGGTGTCACACCAGGAGGAAGTGATTCAAATGATGAAGCTTGCAATGTGGTGCTTGCAGAATGACAGCAGCCGGAGGCCTTCTATGTCAATGGTTGTCAAGGTATTGGAAGGTGCAATGAGCGTGGAGAACTGCCTAGATTACAGTTTTTTCAATGCAAATTCAGTAATATCTGCTCAAGGCAACCCATCTACATATTCGGCTCCACCTCAAGAATCAATACTATCTGGTCCAAGATGA
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| Protein seq | MSPGNLFADFTVLVVVVLAVAAPPVSGQRSVYPSANLSTLWVKNKVLDSVPYEDGLVRAIVLRSPQTSDLSFAAGFFCTPPCQEFIFAVFIFPDTDSFPVNKMARVVWCANQASPVGENATLELTGDGDLVLREKANGRLIWSSGTSDQSVRRMEITEQGNLVLFGQRNMTVWQSFDHPTDALVPGQSLLQGKMLRANASPTNWTEGKIYITVLRDGVHGYVESTPPQLYFKHELSRNMSQRDPTRITFTNGSLSIFLQSTHPGNPDESIQFQEAKSTQYIRLESDGHLRLFEWSRGEPSWIMVSDVMKEFLHVDDCAFPTVCGEYGICTSGQCICPFQSNSSSRYFQLVDERKTNLGCAPVTPVSCQEIKNHQLLTLTDVSYFDMSQIIMNAKNRDDCKQACLKNCSCKAVAFRYGQNDSNGECRSVTEVFSLQSIQPEKVNYNSSAYLKVQITPSSDPTQKKLKTILGATLAAITTLVLVVIVAIYVRRRRKYQELDEELEFDILPGMPTRFSFEKLRECTEDFSKKLGEGGFGSVFEGKIGEESVAVKRLEGARQGKKEFLAEVETIGSIEHINLVRLIGFCAEKSNRLLVYEYMPRGSLDRWIYYRHNNAPLDWCTRCKIIMDIAKGLCYLHEECRRKIAHLDIKPQNILLDENFNAKLADFGLSKLIDRDQSKVVTVMRGTPGYLAPEWLTSQITEKVDIYSFGVVLMEIISGRKNIDLSQPEESVQLINLLREKAQNDQLLDMIDKHSNDMVSHQEEVIQMMKLAMWCLQNDSSRRPSMSMVVKVLEGAMSVENCLDYSFFNANSVISAQGNPSTYSAPPQESILSGPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.584076 | 0.886576 | 0.475064 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g23700 | RBH | 0.421348 | 0.526605 | 0.123125 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0303100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007180 | RBH | 0.142678 | 0.0 | 0.354866 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007810 | RBH | 0.0 | 2.963221 | 0.479221 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007510 | RBH | 0.062728 | 0.340377 | 0.757392 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0007280 | RBH | 0.026779 | 0.065278 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007420 | RBH | 0.293478 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0220100 | RBH | 1.343606 | 4.287181 | 3.172367 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007170 | RBH | 0.000000 | 0.044669 | 0.016819 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0219200 | RBH | 0.3666105 | 2.696672 | 3.212302 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0006950 | RBH | 0.019502 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007230 | RBH | 0.018599 | 0.304985 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007310 | RBH | 0.000000 | 4.545903 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007150 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007550 | RBH | 0.100653 | 3.448607 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007220 | RBH | 0.117159 | 1.003413 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007320 | RBH | 1.005413 | 6.819118 | 0.729526 |
