Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0291900 | OGI:04041790 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:12719050-12725101 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATTTTGCAGATGTGAACTCACCAAAGATTGCTTGATCCAAGCTTCCATTTTCAAGGTATTCATAAACCAACAAGGGTGTTTTACTGTCAATACAACATCCATGCAATCTCACAAGATTCCGATGTTGCACGGCCGAAATTGTTGCAACCTCTGTCACAAACTCGCTTGCCCCCTGATGAGATGACTGAGAAAGTTGCTTCACAGCTATAACTCTTTTATCATGTAGCTTACCCTGCCAAATTTGTTACATGTATATTTTGAGCATGGACAAAATATTGCTAAAATGCAACACTCAAAAGCCAAATCACATTAATTTATATCCAATTGTACATGATTAATTATGGGAAACAAGAACCTTATACACCGGCCCGAATCCACCTTCCCCTAGGATATTTTGAGAACTGAAATTGTCGGTGGCTAGCTTGAGCTCAGCATAATTGAAAACATCAGGTTGTCCAACCAAATAGTACAGTTCTGCATGTTATTTTTAGGACAGATGAGAAGATTATTCATTTGACAATTTTGATGTTTGAATTATGTACTAACAAATAATACCTTCTTTTTGATATGCCAATGCCCTCCGCTTCTTTAACAGCGTAAACACTCCAAATAATGCTGCTAATACTAAAACTATTGCACCAATAGATATTCCGGCAATTATACCTACTTTACTTTCGCTTTTTGGTATGCCATTTCGCACAGTAGGAGTAAAATCTACAAAGGAATAATATTATTTCTTGGCAGCTGGTGTAGCACTTCCTGATACTATATATAATGTTTCGCTTACTTGGAGTGACACTCAATGCTGAGATCATTGGCCCATAGATTCCCCCGCCCTTACCAGCCCAGAATAGATGGATCTCGAGAAAATTTTTAGACACAGTTACCATGAAACTCCTATTAACAACGCTAAAAGACTTTCCACCTGCCGTCTTCCTTATATCAAAATCCTTTTCTTTCAAAGCACCCTATGTAAATGTCAATAATAGTTTCAGATAAAGAATGATAAGATTAAGTAGAAAAACATTATATAAAATGCACTTGATTGGTACCTGAATATATATGTCAAAAACTCTTCTCCCTAAGCTTAGCCAAGTCTGTGAGTCCGGAAAAGCAATTTCTGCAAATCGAAGCAGAACTGTGTAATTTCCATTTTCAAGTCCAAGGCCGTAATACCTCAGAGATGATGGCGACACCCTTCCAGTTTCAAACAACTTTGAATCAACTACATTGTTAAAATTTTGGGAACTATATATAATGTTCTTTGCATCTGTGGCCCGGAAGTAGTGTCCTACACTGCTGACACCCCATCTTGTTTGACCAGTAACATAATATGTTGCAGCTCCAAGATTTGCAGGATCTGCTTCATAAATGGTATTATCTGATCCTCTCGTTGATGTATTACTACCACAGTCAACCGCAAAAGAATAATCTACGATCACAAAATTGTAACAATCATTAAAATTCCTTAGCTCATATTATTGTCTTTGGTTCAATGAAGATTGAGAAATGTACATTTTGGAGATCCACGGAAACAAGGAGTGTCTTGTTGGAGGCAGTTTAGCCCCCAAGGTAGTCTACTGTGCAAATTTGGATTGAAAATTTAAGTTGTCAGCAAGCATTCTTATAGTGCAATAGCAAAATTATAAGAATTAGAACTAAATTCGTATAGTGCACTAGCAAAATTAGAACTAAATGTCACAATTAGTATGTACCTGTTACTGGTGCTACCGAGTAAAAAGTTGTTTGCCACCAAATTCCTTTCACAAAACAGAATATTAGAATATCTATTTTTTTCTCAGCAACACAGATATCATAATATTACACTTACAACTGTAAATTGTTTTGGCTAGCCCAAGAAGGAATGCTCCCAGTGAGTTGATTGTACGAAAAATCTCTGTAAACATTACAGAATTAGATTATACAGGAGTTAATATATTCCATTATGAAAGTAAATTGTGCTATAATGCCATGTCGATTGTATTTGACATACATCGCTTTTAAGGAAGAGCTTATACCATCAGGCAACCTTCCTGCAAGGTTATTGTTCCCAAGAAACCTGAATTGGGCACAATTCAAGATGATCGAACATGTTCATCTGCTTAATAGGAGCTTCTATCAACAAATTAATGTAAAAAGAATTTCTTACAAGAACTGTAGATTTCCCAAATTCAGGATGGATTGAGAAACTTTCCCTGTGATATTGTTAAAACTTAGGTCCCTGTACCACATGACAACCATATTACTTGAACATATGGTACAGAACTTGAGTTAATGATTAATAATATCATCAATTGGCACCATGGCCTGTAATTGAAAACTTACAGCAAGCTTAACTTTTCAAACATAGAAAAATCTACTGCTCCGAGATCACCATATATCTTGCAGTTCCTCAATATTCTGTAACAATGAAATCCAACCGTGGTAACTTGCAACTAGACAATATACTGTAAGCTTTATAGCTGAAATCATCACATACAGGGTGTTCAGAGAAGTCAGATTACTGATAAGAGCCAATGGAGAGATCCCATTTACAATATCTCCAATCCGCCTGCTCATTTATATTTTTCATAAATTAGTTATCAGCCTTGACATTATCAACCTTCAAGAGTATACAATGTCACCTAAAGAGTATACTTACAAGGTTGTTAATTTGGTCAGATTAGACAAACTTTCTGGGATTGGTCCTTCAAATGAATTTCCTTGGAAAGCACTACAATCTCATAATTTTAGAAAAAGGGCATTGCACATTTTAAAATAAGAAAAAGATATAAAAGTTCTATATGTGACCAGTCTTAATAAAATCACTACGTATGTATATGCCACCTGGACAAGTTACTGTGATGCAGCTTTATTCATTTCTATCTAGCGAGGACTGAAATGTGAAAATGCAATTGTTTATAGAAATTTAGTTCGGTCTAACAAAAAGTACATCGAGGTACCGGTACCTCATGGTAATAAGTCGTTTATGATCGTTAGATTTAGCTAGGTAGGATGAGCATTGTTAGATCAAAAAATCAAAAACGATTTGGTACTGTGAGGTACCGGTATCTCGAGATACTTTTTGTTGGAGCGGAGCAAATCTATTGTTTATAAGTCTGAATGGAAAGAACATGATATACAGAATAATTTATCTTGCACAAATTCATCTCTCTCAAAAATAGGATAGAACATATGAGATATGTTAATAAGTTAATATTAATAATCTTACATTTCTTCCAAATTAGTCATGCTACCTAAATAATCAGGTATTTTCCCTGTGAATCCATTGTCTGATGCTAGACTGCAAGCACACCAAAATGTCATTTATCATGAAAGCATGACGAATATAACAGCTGAGGCTATGCTTTTGACTATACAGGATCTGCAGGTTCTGAAGTTTTGAGAACGTTGAAGGGAACGGACCACTGAATCCAGAACTATCAATGTACCTGTTATTGAAAGTTTGTTATTGTCATGTTCAACAATAGATCTGGCCATTCCAAATTTTAATTCTTATAGAAATAGAAATATGAAGTTAGAAATCAATGGAGTATCTTACAATTGCTTAAGTTTGGTCAAGTTGCCTAGTTCTTCAGGAAGGCCACCTGTGAAATTGTTTAAGCTAATGCCCCTAAATGAAAATAAAATATTTCAAGATAAGAAATTATTATCATCAACTAATAGCAGGAAGGGGCATAGTTTTTCCCGATGTGCCATTTGACCCGCAATATTCATCATGACAATATGTTCATGTTTTTGCTGTTCGATCAACTTTAGTTGATCATTTGAAAGTTGAAACAACACATGAACAGGGAAGTTACATTGACGTGCCTATTACATAATATTTAGTACTGAGTAGTAGTTATGATTTTTTTATTACTTTATTGCTCGAACTTATGCGATTGCCATTTGTTGTACTATTATATTAGTTCATGGAGTCCAAATATCACTTACTACAAAAAAATGCACATCAGGTCAACACTATAGGTGCCATACCAGCTAAAACCGGTAGCTATAGTGTTTTTCCCACCTCCTTAGGACTAAAAACATAAAAAACTAACACCTTTAAGGGACTATAGGTACTTGTTCTTGAGAAAAACCGACACGTATAATATAGGTGTCAGTTAATTAAAAAACGACACGTAAAATATATTATAGGTGACGATCAACACTATAGGTGCCAGACTAGCTAAAACCGGTAACTATAGTGTTTTTCCCACCTCCCCAGGCTGAAAACATAAAAAACTAACACCTTTAAGGGACTATAGTTGCTTGTTTTTGAGAAAAACCGACACGTATAATATAGATGTCAGTTAATTAAAAACCGACACCTAAAATATATTATAGGTGATGGTTTTTCAGTAAAACGAGCCGAGAAGAACCGGTGTGCTTGAACCCACCACACCACCACCCACCAGTCCACTCTCTTCTTCCTCTTCTCTTCTTCCTCCTCTCTTCTTCTTCCTTCTATCTTCCTCTCCACTTCTTCCTTCTCCTCTCCTCCATCCATCACGGCGGCAGCACGGGAGCGGGGGGGGGGGGGGCATGGCAGTGGGACGGAGGCGGCCTGTGCTGGATCTGGTGGTGTGGTGGTGCTGGCCCCTCGGCTGTGGGGATCTAGCAGGCTGGAGGTGCGGCGCGGCAACGACAGCCGGTGTGGAGGAGGTGCGATGGCGTCGGCAGCCAGTAGATCCGTCTCTTCCCCTCCCTCCCTCTTTGTGATTTGTTGATATAGATGTGATCTATTGCTAATGTAGATGTGATCTAGATGTGTATTATTTGATCTAGTTGTGTTGTTTTTCTAGGGATTATTGACTATAGTTCATGGATTTGAGGCAATTTTTAGATATGGGTTTTAGTTGGGATCGGCTTGACGGCTCAATGTATCGAGCTGATATTTTTTGCTCGTGTGCGCCTAAAAGGAGCTGGTTTTCGAACCGGCACCTTTGACCCCGGGTAATCAGTGCTGTCTTCCTGGTACCGGTTGGAAAACTGACACCTATGATGTTTTATGTAGTAGTTTATATACTCCATTTTCTTTCGTATTACCTACTATTCAAGTTTTGTTGCAAGTCAAATATATGTACTCTTGGCTATCAAGTTTTACAAATGAGTATAGTTTAACATAGTTAGATTTATATATATATTTTTAGATTCATCATGAGAAATATTGTGACAATATATAATTCATACTCAATTGGTTAAAAAAACAACTTCTTGATATTTTACATAGGACAACGGAAAAATGATGAGTAATTTGGAACAGAAGGAGCAGCTGAAGATTAATCCGCATATGAGAAAATATTTCTTACAATGAAATAAGATTGGTGAGGTTTCCAAGTTCCTTTGGAAGTGGTCCAGATAGTGGATTGAAACCCAATGCCCTTTAAATAATTAAGAATAGTTAAGAAACAATAACGATCAATGGATGAAACATGATATAGAACATGTAACTCCTACAAGTATTTCATCGAAGTGAATTTTCCGATGAATGATGGAATGAAACCAGTCAAGTAATTATAGTTCAAGTCCCTGAAAACAACATAAAAAAGTAGAACAATTAGCCAACATAAAAAGGATGTTGCATGGCTGACTGAAATGTACCCTGCTGTTCACAAAGAGAATTTGTGTGATTGAATTTTTAGTCTGTGAAAAACTTGATCTATAACGTAACTTTAGTAGCAGGACTAGTTAAGAAGAAAAAGACTTAGATACCATACAAGTTCTCTAGACGGGTGAGATTCTGTAGCTCTGAAGGTATTTGACCAACCACGTCCAACTTATTTACCCTCCTTCATAACAACAGACAAGTAATACCTATAAAAAAATGTGCTTGAGCTATTAGGTGTTGCCCAAAGAGAGTGTGCGTACAGTTTTGTAATGCGGCATAGTGTGTTGTTGCTGAAAGTGCAATCGCATTTGATGAATGGGTTGATGTTGGGATAGTAATCCCAGTCGTTTTTGTCAGCGGCGAAACCGCTGCAGAGATCACCGCTAACATTCCACTCCGATGATGCCTCCTTGCCCCATCTCCTCATGATCGTGTTCAGGGCCACCGCTGCATTCAT
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| CDS seq | ATGAATGCAGCGGTGGCCCTGAACACGATCATGAGGAGATGGGGCAAGGAGGCATCATCGGAGTGGAATGTTAGCGGTGATCTCTGCAGCGGTTTCGCCGCTGACAAAAACGACTGGGATTACTATCCCAACATCAACCCATTCATCAAATGCGATTGCACTTTCAGCAACAACACACTATGCCGCATTACAAAACTGAGGGTAAATAAGTTGGACGTGGTTGGTCAAATACCTTCAGAGCTACAGAATCTCACCCGTCTAGAGAACTTGGCATTGGGTTTCAATCCACTATCTGGACCACTTCCAAAGGAACTTGGAAACCTCACCAATCTTATTTCATTGGGCATTAGCTTAAACAATTTCACAGGTGGCCTTCCTGAAGAACTAGGCAACTTGACCAAACTTAAGCAATTGTACATTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCAACGTTCTCAAAACTTCAGAACCTGCAGATCCTTCTAGCATCAGACAATGGATTCACAGGGAAAATACCTGATTATTTAGGTAGCATGACTAATTTGGAAGAAATGTTTCTTGGGAACAATAACCTTGCAGGAAGGTTGCCTGATGGTATAAGCTCTTCCTTAAAAGCGATTAATACATCAACGAGAGGATCAGATAATACCATTTATGAAGCAGATCCTGCAAATCTTGGAGCTGCAACATATTATGTTACTGGTCAAACAAGATGGGGTGTCAGCAGTGTAGGACACTACTTCCGGGCCACAGATGCAAAGAACATTATATATAGTTCCCAAAATTTTAACAATGTAGTTGATTCAAAGTTGTTTGAAACTGGAAGGGTGTCGCCATCATCTCTGAGGTATTACGGCCTTGGACTTGAAAATGGAAATTACACAGTTCTGCTTCGATTTGCAGAAATTGCTTTTCCGGACTCACAGACTTGGCTAAGCTTAGGGAGAAGAGTTTTTGACATATATATTCAGGGTAAGCTACATGATAAAAGAGTTATAGCTGTGAAGCAACTTTCTCAGTCATCTCATCAGGGGGCAAGCGAGTTTGTGACAGAGGTTGCAACAATTTCGGCCGTGCAACATCGGAATCTTGTGAGATTGCATGGATGTTGTATTGACAGTAAAACACCCTTGTTGGTTTATGAATACCTTGAAAATGGAAGCTTGGATCAAGCAATCTTTGGTGAGTTCACATCTGCAAAATAG
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| Protein seq | MNAAVALNTIMRRWGKEASSEWNVSGDLCSGFAADKNDWDYYPNINPFIKCDCTFSNNTLCRITKLRVNKLDVVGQIPSELQNLTRLENLALGFNPLSGPLPKELGNLTNLISLGISLNNFTGGLPEELGNLTKLKQLYIDSSGFSGPFPSTFSKLQNLQILLASDNGFTGKIPDYLGSMTNLEEMFLGNNNLAGRLPDGISSSLKAINTSTRGSDNTIYEADPANLGAATYYVTGQTRWGVSSVGHYFRATDAKNIIYSSQNFNNVVDSKLFETGRVSPSSLRYYGLGLENGNYTVLLRFAEIAFPDSQTWLSLGRRVFDIYIQGKLHDKRVIAVKQLSQSSHQGASEFVTEVATISAVQHRNLVRLHGCCIDSKTPLLVYEYLENGSLDQAIFGEFTSAK |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g56130 [UniProtKB/Swiss-Prot:C0LGH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0291900 | OsNip_04t0291900-00 | Chr04 | 12719050 | 12725101 | - | RAP2018-11-26 | ||
| CDS seq | ATGAATGCAGCGGTGGCCCTGAACACGATCATGAGGAGATGGGGCAAGGAGGCATCATCGGAGTGGAATGTTAGCGGTGATCTCTGCAGCGGTTTCGCCGCTGACAAAAACGACTGGGATTACTATCCCAACATCAACCCATTCATCAAATGCGATTGCACTTTCAGCAACAACACACTATGCCGCATTACAAAACTGAGGGTAAATAAGTTGGACGTGGTTGGTCAAATACCTTCAGAGCTACAGAATCTCACCCGTCTAGAGAACTTGGCATTGGGTTTCAATCCACTATCTGGACCACTTCCAAAGGAACTTGGAAACCTCACCAATCTTATTTCATTGGGCATTAGCTTAAACAATTTCACAGGTGGCCTTCCTGAAGAACTAGGCAACTTGACCAAACTTAAGCAATTGTACATTGATAGTTCTGGATTCAGTGGTCCGTTCCCTTCAACGTTCTCAAAACTTCAGAACCTGCAGATCCTTCTAGCATCAGACAATGGATTCACAGGGAAAATACCTGATTATTTAGGTAGCATGACTAATTTGGAAGAAATGTTTCTTGGGAACAATAACCTTGCAGGAAGGTTGCCTGATGGTATAAGCTCTTCCTTAAAAGCGATTAATACATCAACGAGAGGATCAGATAATACCATTTATGAAGCAGATCCTGCAAATCTTGGAGCTGCAACATATTATGTTACTGGTCAAACAAGATGGGGTGTCAGCAGTGTAGGACACTACTTCCGGGCCACAGATGCAAAGAACATTATATATAGTTCCCAAAATTTTAACAATGTAGTTGATTCAAAGTTGTTTGAAACTGGAAGGGTGTCGCCATCATCTCTGAGGTATTACGGCCTTGGACTTGAAAATGGAAATTACACAGTTCTGCTTCGATTTGCAGAAATTGCTTTTCCGGACTCACAGACTTGGCTAAGCTTAGGGAGAAGAGTTTTTGACATATATATTCAGGGTAAGCTACATGATAAAAGAGTTATAGCTGTGAAGCAACTTTCTCAGTCATCTCATCAGGGGGCAAGCGAGTTTGTGACAGAGGTTGCAACAATTTCGGCCGTGCAACATCGGAATCTTGTGAGATTGCATGGATGTTGTATTGACAGTAAAACACCCTTGTTGGTTTATGAATACCTTGAAAATGGAAGCTTGGATCAAGCAATCTTTGGTGAGTTCACATCTGCAAAATAG
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| Protein seq | MNAAVALNTIMRRWGKEASSEWNVSGDLCSGFAADKNDWDYYPNINPFIKCDCTFSNNTLCRITKLRVNKLDVVGQIPSELQNLTRLENLALGFNPLSGPLPKELGNLTNLISLGISLNNFTGGLPEELGNLTKLKQLYIDSSGFSGPFPSTFSKLQNLQILLASDNGFTGKIPDYLGSMTNLEEMFLGNNNLAGRLPDGISSSLKAINTSTRGSDNTIYEADPANLGAATYYVTGQTRWGVSSVGHYFRATDAKNIIYSSQNFNNVVDSKLFETGRVSPSSLRYYGLGLENGNYTVLLRFAEIAFPDSQTWLSLGRRVFDIYIQGKLHDKRVIAVKQLSQSSHQGASEFVTEVATISAVQHRNLVRLHGCCIDSKTPLLVYEYLENGSLDQAIFGEFTSAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0291900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026560 | SBH | 0.431785 | 2.766697 | 1.430352 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027340 | SBH | 0.087790 | 2.043086 | 1.179086 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007130 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026760 | SBH | 0.027891 | 0.127751 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027050 | SBH | 4.165082 | 21.620441 | 9.249182 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0493100 | SBH | 3.2457925 | 28.794131 | 4.519752 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0006880 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0210100 | RBH | 0.0147545 | 0.879504 | 0.2396305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0006630 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0006970 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0006950 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0006840 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026800 | SBH | 0.040776 | 1.921849 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026010 | SBH | 0.146387 | 0.396267 | 0.890258 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025890 | SBH | 5.244827 | 65.479820 | 3.933135 |
