Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_04g0118700 OGI:04003930 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr04:1110678-1113347
Gene Symbol -
DNA seq

TCCACCCAACCAGCCACTGACTGAAGCTTCACCATCCCCATCCCTCCCATGGCCATGGCCGCCGCCGCCGCAACTTCGCCGCCGCCGCCGCCGCCGCCACCGCCCACGCACCCACCTCCCACCTCGGCGACAGTCCGCTCCCTGACCGCCGCGGGCAACCACGCCGCCGCCCTCCGCGCGCTCTCCTCCATCACCATGGCGTCGCCGCAGCAGCAGCTCGACCACTCGGCGCTCCCGCCCGCCATCAAGTCCGCCGCGGCCCTCCGCGACGCCCGCTCCGCCCGCGCCATCCACGCCGCCGCGCTCCGCCGCGGCCTGCTCCACCGCCCCTCCCCGGCCGTCGCCAACGCGCTGCTCACCGCCTACGCGCGCTGCGGCCGCCTCGCCGCCGCGCTCGAGGTGTTCGGCTCCATCTCCGACTCCGCGCATGACGCCGTCTCCTTCAACTCCCTCATCTCCGCGCTCTGCCTCTTCCGCCGCTGGGACCACGCGCTCGCCGCGCTCCGCGCCATGCTCGCCGGCGGCCACCCGCTCACTTCCTTCACGCTCGTCAGCGTCCTCCGCGCCGTCTCCCACCTCCCCGCCGCCGCCGCCGCCGTTCGCCTCGGCCGCGAGGCGCACGCCTTCGCGCTCAAGAACGGCCTCCTCCATGGCCACCAGCGCTTCGCCTTCAACGCGCTCCTCTCCATGTACGCCCGCCTCGGCCTCGTCGCCGACGCGCAGAGGCTCTTCGCCGGCGCCACGCCCGGCCGCGGCGACGTCGTCACGTGGAACACCATGGTCAGCGTGCTCGTGCAGAGCGGGATGTTCGACGAGGCCGTCCAGACGCTCTACGACATGGTGGCGCTCGGCGTGCGGCCCGACGGCGTCACGTTCGCGAGCGCGCTCCCGGCGTGCTCGCGGCTAGAGCTGCTCGACGTCGGCCGGGAGATGCACGCCTACGTCATCAAGGACGACGAGCTCGCCGCCAACTCGTTCGTGGCGAGCGCGCTGGTGGACATGTACGCCACGCACGAGCAGGTGGGGAAGGCGAGGCAGGTGTTCGACATGGTGCCCGACTCCGGGAAGCAGCTCGGGATGTGGAACGCCATGATCTGCGGCTACGCGCAGGCCGGCATGGACGAGGAGGCGCTTCGTCTGTTCGCGCGGATGGAGGCAGAGGCCGGCTTCGTGCCCTGCGAGACCACCATGGCCAGCGTGCTGCCGGCGTGCGCGCGCTCCGAGGCGTTCGCCGGCAAGGAGGCCGTGCACGGGTACGTGGTGAAGCGCGGCATGGCGGGCAACCGGTTCGTGCAGAACGCGCTCATGGACATGTACGCGCGCCTCGGCAAGACGGACGTCGCCCGCCGGATCTTCGCCATGGTCGACCTCCCTGACGTCGTCTCCTGGAACACCCTCATCACCGGCTGCGTCGTCCAGGGCCACGTCGCCGACGCGTTCCAGCTCGCCCGCGAGATGCAGCAGCTAGAAGAAGGCGGCGTGGTGCCGAACGCCATCACCCTGATGACCCTCCTGCCGGGGTGCGCCATCCTGGCGGCGCCGGCGAGGGGGAAGGAGATCCACGGGTACGCGGTGAGGCACGCGCTGGACACGGACGTGGCCGTCGGGAGCGCGCTGGTGGACATGTACGCCAAGTGCGGGTGCCTGGCGCTGTCGAGGGCGGTGTTCGACCGGCTGCCGCGGCGGAACACCATCACCTGGAACGTCCTCATCATGGCGTACGGCATGCACGGGCTCGGCGGCGAGGCCACGGTGCTGTTCGACCGGATGACGGCGAGCGGCGAGGCGAGGCCCAACGAGGTGACCTTCATGGCGGCCCTGGCGGCGTGCAGCCACTCCGGCATGGTGGACCGTGGGCTGCAGCTGTTCCACGCCATGGAGCGCGACCACGGCGTCGAGCCGACGCCGGACATCCTCGCCTGCGTCGTGGACATCCTGGGGCGCGCCGGCAGGCTGGACGAGGCGTACGCCATGGTGACCTCGATGGAGACCGGCGAGCAGCAGGTGTCGGCGTGGAGCACGATGCTCGGCGCGTGCCGGCTCCACCGCAACGTCCACCTCGGCGAGATCGCCGGCGAGCGGCTGCTGGAGCTGGAGCCGGAGGAGGCGAGCCACTATGTGCTCCTCTGCAACATCTACTCCGCGGCCGGGCAGTGGACTCGGGCGGCGGAGGTGAGGAGCAGGATGCGGCGGCGAGGCGTGGCGAAGGAGCCCGGGTGCAGCTGGATCGAGGTCGACGGCGCGATCCACCGGTTCATGGCCGGCGAGTCGGCGCACCCGGCGAGCGAGGAGGTGCACGCGCACATGGAGGCGCTCTGGGGGGAGATGGTGGCGCGCGGGTACACGCCGGACACGTCGTGCGTGCTCCACGACATGGACGACGGCGACAAGGCGGCCGTGCTCCGGTGCCACAGCGAGAAGCTCGCCATCGCGTTCGGGCTGCTCAGGGCGGCGCCGGGCGCCACCATTAGGGTGGCCAAGAACCTGAGGGTGTGCAACGACTGCCATGAGGCGGCCAAGTTCTTGTCAAAGATGGTCGGGAGGGAGATCGTGCTCAGGGATGTCAGAAGGTTTCACCATTTCCGCAACGGCCAATGCTCCTGTGGGGATTACTGGTAGTGAAGTACTAGTCTCTCAAATTAATGATGAATTATATATAGCATCTAATAC

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CDS seq

ATGGCCATGGCCGCCGCCGCCGCAACTTCGCCGCCGCCGCCGCCGCCGCCACCGCCCACGCACCCACCTCCCACCTCGGCGACAGTCCGCTCCCTGACCGCCGCGGGCAACCACGCCGCCGCCCTCCGCGCGCTCTCCTCCATCACCATGGCGTCGCCGCAGCAGCAGCTCGACCACTCGGCGCTCCCGCCCGCCATCAAGTCCGCCGCGGCCCTCCGCGACGCCCGCTCCGCCCGCGCCATCCACGCCGCCGCGCTCCGCCGCGGCCTGCTCCACCGCCCCTCCCCGGCCGTCGCCAACGCGCTGCTCACCGCCTACGCGCGCTGCGGCCGCCTCGCCGCCGCGCTCGAGGTGTTCGGCTCCATCTCCGACTCCGCGCATGACGCCGTCTCCTTCAACTCCCTCATCTCCGCGCTCTGCCTCTTCCGCCGCTGGGACCACGCGCTCGCCGCGCTCCGCGCCATGCTCGCCGGCGGCCACCCGCTCACTTCCTTCACGCTCGTCAGCGTCCTCCGCGCCGTCTCCCACCTCCCCGCCGCCGCCGCCGCCGTTCGCCTCGGCCGCGAGGCGCACGCCTTCGCGCTCAAGAACGGCCTCCTCCATGGCCACCAGCGCTTCGCCTTCAACGCGCTCCTCTCCATGTACGCCCGCCTCGGCCTCGTCGCCGACGCGCAGAGGCTCTTCGCCGGCGCCACGCCCGGCCGCGGCGACGTCGTCACGTGGAACACCATGGTCAGCGTGCTCGTGCAGAGCGGGATGTTCGACGAGGCCGTCCAGACGCTCTACGACATGGTGGCGCTCGGCGTGCGGCCCGACGGCGTCACGTTCGCGAGCGCGCTCCCGGCGTGCTCGCGGCTAGAGCTGCTCGACGTCGGCCGGGAGATGCACGCCTACGTCATCAAGGACGACGAGCTCGCCGCCAACTCGTTCGTGGCGAGCGCGCTGGTGGACATGTACGCCACGCACGAGCAGGTGGGGAAGGCGAGGCAGGTGTTCGACATGGTGCCCGACTCCGGGAAGCAGCTCGGGATGTGGAACGCCATGATCTGCGGCTACGCGCAGGCCGGCATGGACGAGGAGGCGCTTCGTCTGTTCGCGCGGATGGAGGCAGAGGCCGGCTTCGTGCCCTGCGAGACCACCATGGCCAGCGTGCTGCCGGCGTGCGCGCGCTCCGAGGCGTTCGCCGGCAAGGAGGCCGTGCACGGGTACGTGGTGAAGCGCGGCATGGCGGGCAACCGGTTCGTGCAGAACGCGCTCATGGACATGTACGCGCGCCTCGGCAAGACGGACGTCGCCCGCCGGATCTTCGCCATGGTCGACCTCCCTGACGTCGTCTCCTGGAACACCCTCATCACCGGCTGCGTCGTCCAGGGCCACGTCGCCGACGCGTTCCAGCTCGCCCGCGAGATGCAGCAGCTAGAAGAAGGCGGCGTGGTGCCGAACGCCATCACCCTGATGACCCTCCTGCCGGGGTGCGCCATCCTGGCGGCGCCGGCGAGGGGGAAGGAGATCCACGGGTACGCGGTGAGGCACGCGCTGGACACGGACGTGGCCGTCGGGAGCGCGCTGGTGGACATGTACGCCAAGTGCGGGTGCCTGGCGCTGTCGAGGGCGGTGTTCGACCGGCTGCCGCGGCGGAACACCATCACCTGGAACGTCCTCATCATGGCGTACGGCATGCACGGGCTCGGCGGCGAGGCCACGGTGCTGTTCGACCGGATGACGGCGAGCGGCGAGGCGAGGCCCAACGAGGTGACCTTCATGGCGGCCCTGGCGGCGTGCAGCCACTCCGGCATGGTGGACCGTGGGCTGCAGCTGTTCCACGCCATGGAGCGCGACCACGGCGTCGAGCCGACGCCGGACATCCTCGCCTGCGTCGTGGACATCCTGGGGCGCGCCGGCAGGCTGGACGAGGCGTACGCCATGGTGACCTCGATGGAGACCGGCGAGCAGCAGGTGTCGGCGTGGAGCACGATGCTCGGCGCGTGCCGGCTCCACCGCAACGTCCACCTCGGCGAGATCGCCGGCGAGCGGCTGCTGGAGCTGGAGCCGGAGGAGGCGAGCCACTATGTGCTCCTCTGCAACATCTACTCCGCGGCCGGGCAGTGGACTCGGGCGGCGGAGGTGAGGAGCAGGATGCGGCGGCGAGGCGTGGCGAAGGAGCCCGGGTGCAGCTGGATCGAGGTCGACGGCGCGATCCACCGGTTCATGGCCGGCGAGTCGGCGCACCCGGCGAGCGAGGAGGTGCACGCGCACATGGAGGCGCTCTGGGGGGAGATGGTGGCGCGCGGGTACACGCCGGACACGTCGTGCGTGCTCCACGACATGGACGACGGCGACAAGGCGGCCGTGCTCCGGTGCCACAGCGAGAAGCTCGCCATCGCGTTCGGGCTGCTCAGGGCGGCGCCGGGCGCCACCATTAGGGTGGCCAAGAACCTGAGGGTGTGCAACGACTGCCATGAGGCGGCCAAGTTCTTGTCAAAGATGGTCGGGAGGGAGATCGTGCTCAGGGATGTCAGAAGGTTTCACCATTTCCGCAACGGCCAATGCTCCTGTGGGGATTACTGGTAG

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Protein seq

MAMAAAAATSPPPPPPPPPTHPPPTSATVRSLTAAGNHAAALRALSSITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW

Function Pentatricopeptide repeat-containing protein At3g57430, chloroplastic [UniProtKB/Swiss-Prot:Q7Y211]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_04g0118700 OsNip_04t0118700-00 Chr04 1110678 1113347 + RAP2018-11-26
CDS seq

ATGGCCATGGCCGCCGCCGCCGCAACTTCGCCGCCGCCGCCGCCGCCGCCACCGCCCACGCACCCACCTCCCACCTCGGCGACAGTCCGCTCCCTGACCGCCGCGGGCAACCACGCCGCCGCCCTCCGCGCGCTCTCCTCCATCACCATGGCGTCGCCGCAGCAGCAGCTCGACCACTCGGCGCTCCCGCCCGCCATCAAGTCCGCCGCGGCCCTCCGCGACGCCCGCTCCGCCCGCGCCATCCACGCCGCCGCGCTCCGCCGCGGCCTGCTCCACCGCCCCTCCCCGGCCGTCGCCAACGCGCTGCTCACCGCCTACGCGCGCTGCGGCCGCCTCGCCGCCGCGCTCGAGGTGTTCGGCTCCATCTCCGACTCCGCGCATGACGCCGTCTCCTTCAACTCCCTCATCTCCGCGCTCTGCCTCTTCCGCCGCTGGGACCACGCGCTCGCCGCGCTCCGCGCCATGCTCGCCGGCGGCCACCCGCTCACTTCCTTCACGCTCGTCAGCGTCCTCCGCGCCGTCTCCCACCTCCCCGCCGCCGCCGCCGCCGTTCGCCTCGGCCGCGAGGCGCACGCCTTCGCGCTCAAGAACGGCCTCCTCCATGGCCACCAGCGCTTCGCCTTCAACGCGCTCCTCTCCATGTACGCCCGCCTCGGCCTCGTCGCCGACGCGCAGAGGCTCTTCGCCGGCGCCACGCCCGGCCGCGGCGACGTCGTCACGTGGAACACCATGGTCAGCGTGCTCGTGCAGAGCGGGATGTTCGACGAGGCCGTCCAGACGCTCTACGACATGGTGGCGCTCGGCGTGCGGCCCGACGGCGTCACGTTCGCGAGCGCGCTCCCGGCGTGCTCGCGGCTAGAGCTGCTCGACGTCGGCCGGGAGATGCACGCCTACGTCATCAAGGACGACGAGCTCGCCGCCAACTCGTTCGTGGCGAGCGCGCTGGTGGACATGTACGCCACGCACGAGCAGGTGGGGAAGGCGAGGCAGGTGTTCGACATGGTGCCCGACTCCGGGAAGCAGCTCGGGATGTGGAACGCCATGATCTGCGGCTACGCGCAGGCCGGCATGGACGAGGAGGCGCTTCGTCTGTTCGCGCGGATGGAGGCAGAGGCCGGCTTCGTGCCCTGCGAGACCACCATGGCCAGCGTGCTGCCGGCGTGCGCGCGCTCCGAGGCGTTCGCCGGCAAGGAGGCCGTGCACGGGTACGTGGTGAAGCGCGGCATGGCGGGCAACCGGTTCGTGCAGAACGCGCTCATGGACATGTACGCGCGCCTCGGCAAGACGGACGTCGCCCGCCGGATCTTCGCCATGGTCGACCTCCCTGACGTCGTCTCCTGGAACACCCTCATCACCGGCTGCGTCGTCCAGGGCCACGTCGCCGACGCGTTCCAGCTCGCCCGCGAGATGCAGCAGCTAGAAGAAGGCGGCGTGGTGCCGAACGCCATCACCCTGATGACCCTCCTGCCGGGGTGCGCCATCCTGGCGGCGCCGGCGAGGGGGAAGGAGATCCACGGGTACGCGGTGAGGCACGCGCTGGACACGGACGTGGCCGTCGGGAGCGCGCTGGTGGACATGTACGCCAAGTGCGGGTGCCTGGCGCTGTCGAGGGCGGTGTTCGACCGGCTGCCGCGGCGGAACACCATCACCTGGAACGTCCTCATCATGGCGTACGGCATGCACGGGCTCGGCGGCGAGGCCACGGTGCTGTTCGACCGGATGACGGCGAGCGGCGAGGCGAGGCCCAACGAGGTGACCTTCATGGCGGCCCTGGCGGCGTGCAGCCACTCCGGCATGGTGGACCGTGGGCTGCAGCTGTTCCACGCCATGGAGCGCGACCACGGCGTCGAGCCGACGCCGGACATCCTCGCCTGCGTCGTGGACATCCTGGGGCGCGCCGGCAGGCTGGACGAGGCGTACGCCATGGTGACCTCGATGGAGACCGGCGAGCAGCAGGTGTCGGCGTGGAGCACGATGCTCGGCGCGTGCCGGCTCCACCGCAACGTCCACCTCGGCGAGATCGCCGGCGAGCGGCTGCTGGAGCTGGAGCCGGAGGAGGCGAGCCACTATGTGCTCCTCTGCAACATCTACTCCGCGGCCGGGCAGTGGACTCGGGCGGCGGAGGTGAGGAGCAGGATGCGGCGGCGAGGCGTGGCGAAGGAGCCCGGGTGCAGCTGGATCGAGGTCGACGGCGCGATCCACCGGTTCATGGCCGGCGAGTCGGCGCACCCGGCGAGCGAGGAGGTGCACGCGCACATGGAGGCGCTCTGGGGGGAGATGGTGGCGCGCGGGTACACGCCGGACACGTCGTGCGTGCTCCACGACATGGACGACGGCGACAAGGCGGCCGTGCTCCGGTGCCACAGCGAGAAGCTCGCCATCGCGTTCGGGCTGCTCAGGGCGGCGCCGGGCGCCACCATTAGGGTGGCCAAGAACCTGAGGGTGTGCAACGACTGCCATGAGGCGGCCAAGTTCTTGTCAAAGATGGTCGGGAGGGAGATCGTGCTCAGGGATGTCAGAAGGTTTCACCATTTCCGCAACGGCCAATGCTCCTGTGGGGATTACTGGTAG

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Protein seq

MAMAAAAATSPPPPPPPPPTHPPPTSATVRSLTAAGNHAAALRALSSITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 1.551445 0.898923 0.223490

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g02850 RBH 1.121136 0.630762 0.063369
Nipponbare | IRGSP 1.0 | RAP-db Os04g0118700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0000910 RBH 0.236720 0.0 0.458076
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0000860 RBH 0.212158 0.0 0.228243
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0000930 RBH 1.013696 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0000950 RBH 0.250103 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0000930 RBH 6.596344 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0022600 RBH 5.1611205 0.634914 0.459198
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0001030 RBH 0.371627 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0022100 RBH 3.990135 0.886215 2.3519755
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0000900 RBH 0.236485 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0000990 RBH 0.654622 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0001010 RBH 12.473088 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0000870 RBH 0.302144 0.087799 0.083545
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0001030 RBH 0.418836 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G000970 RBH 0.494712 0.0 0.390650
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0001030 RBH 0.853226 1.419407 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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