Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_04g0001030 | OGI:04003930 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr04:1382248-1384504 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctcgccggcggccacccgctcacttccttcacgctcgtcagcgtcctccgcgccgtctcccacctccccGccgccgccgccgccgttcgcctcggccgcgaggcgcacgccttcgcgctcaagaacggcctcctccatggccaccagcgcttcgccttcaacgcgctcctctccatgtacgcccgcctcggcctcgtcgccgacgcgcagaggctcttcgccggcgccacgcccggccgcggcgacgtcgtcacgtggaacaccatggtcagcgtgctcgtgcagagcgggatgttcgacgaggccgtccagacgctctacgacatggtggcgctcggcgtgcggcccgacggcgtcacgttcgcgagcgcgctcccggcgtgctcgcggctagagctgctcgacgtcggccgggagatgcacgcctacgtcatcaaggacgacgagctcgccgccaactcgttcgtggcgagcgcgctggtggacatgtacgccacgcacgagcaggtggggaaggcgaggcaggtgttcgacatggtgcccgactccgggaagcagctcgggatgtggaacgccatgatctgcggctacgcgcaggccggcatggacgaggaggcgcttcgtctgttcgcgcggatggaggcagaggccggcttcgtgccctgcgagaccaccatggccagcgtgctgccggcgtgcgcgcgctccgaggcgttcgccggcaaggaggccgtgcacgggtacgtggtgaagcgcggcatggcgggcaaccggttcgtgcagaacgcgctcatggacatgtacgcgcgcctgggcaagacggacgtcgcccgccggatcttcgccatggtcgacctccctgacgtcgtctcctggaacaccctcatcaccggctgcgtcgtccagggccacgtcgccgacgcgttccagctcgcccgcgagatgcagcagctagaagaaggcggcgtggtgccgaacgccatcaccctgatgaccctcctgccggggtgcgccatcctggcggcgccggcgagggggaaggagatccacgggtacgcggtgaggcacgcgctggacacggacgtggccgtcgggagcgcgctggtggacatgtacgccaagtgcgggtgcctggcgctgtcgagggcggtgttcgaccggctgccgcggcggaacaccatcacctggaacgtcctcatcatggcgtacggcatgcacgggctcggcggcgaggccacggtgctgttcgaccggatgacggcgagcggcgaggcgaggcccaacgaggtgaccttcatggcggccctggcggcgtgcagccactccggcatggtggaccgtgggctgcagctgttccacgccatggagcgcgaccacggcgtcgagccgacgccggacatcctcgcctgcgtcgtggacatcctggggcgcgccggcaggctggacgaggcgtacgccatggtgacctcgatggaggccggcgagcagcaggtgtcggcgtggagcacgatgctcggcgcgtgccggctccaccgcaacgtccacctcggcgagatcgccggcgagcggctgctggagctggagccggaggaggcgagccactatgtgctcctctgcaacatctactccgcggccgggcagtggactcgggcggcggaggtgaggagcaggatgcggcggcgaggcgtggcgaaggagcccgggtgcagctggatcgaggtcgacggcgcgatccaccggttcatggccggcgagtcggcgcacccggcgagcgaggaggtgcacgcgcacatggaggcgctctGgggggagatggtggcgcgcgggtacacgccggacacgtcgtgcgtgctccacgacatggacgacggcgacaaggcggccgtgctccggtgccacagcgagaagctcgccatcgcgttcgggctgctcagggcggcgccgggcgccaccattagggtggccaagaacctgagggtgtgcaacgactgccatgaggcggccaagttcttgtcaaagatggtcgggagggagatcgtgctcagggatgtcagaaggtttcaccatttccgcaacggccaatgctcctgtggggattactggtagtgaagtactagtctctcaaattaatgatgaattatatatagcatctaatacacatggttaagaacaaaaatgatatactcattcacataaggtgttcttgtaactcgattaatttacagcaaatgttcagttcatttgttgccactgg
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| CDS seq | atgctcgccggcggccacccgctcacttccttcacgctcgtcagcgtcctccgcgccgtctcccacctccccGccgccgccgccgccgttcgcctcggccgcgaggcgcacgccttcgcgctcaagaacggcctcctccatggccaccagcgcttcgccttcaacgcgctcctctccatgtacgcccgcctcggcctcgtcgccgacgcgcagaggctcttcgccggcgccacgcccggccgcggcgacgtcgtcacgtggaacaccatggtcagcgtgctcgtgcagagcgggatgttcgacgaggccgtccagacgctctacgacatggtggcgctcggcgtgcggcccgacggcgtcacgttcgcgagcgcgctcccggcgtgctcgcggctagagctgctcgacgtcggccgggagatgcacgcctacgtcatcaaggacgacgagctcgccgccaactcgttcgtggcgagcgcgctggtggacatgtacgccacgcacgagcaggtggggaaggcgaggcaggtgttcgacatggtgcccgactccgggaagcagctcgggatgtggaacgccatgatctgcggctacgcgcaggccggcatggacgaggaggcgcttcgtctgttcgcgcggatggaggcagaggccggcttcgtgccctgcgagaccaccatggccagcgtgctgccggcgtgcgcgcgctccgaggcgttcgccggcaaggaggccgtgcacgggtacgtggtgaagcgcggcatggcgggcaaccggttcgtgcagaacgcgctcatggacatgtacgcgcgcctgggcaagacggacgtcgcccgccggatcttcgccatggtcgacctccctgacgtcgtctcctggaacaccctcatcaccggctgcgtcgtccagggccacgtcgccgacgcgttccagctcgcccgcgagatgcagcagctagaagaaggcggcgtggtgccgaacgccatcaccctgatgaccctcctgccggggtgcgccatcctggcggcgccggcgagggggaaggagatccacgggtacgcggtgaggcacgcgctggacacggacgtggccgtcgggagcgcgctggtggacatgtacgccaagtgcgggtgcctggcgctgtcgagggcggtgttcgaccggctgccgcggcggaacaccatcacctggaacgtcctcatcatggcgtacggcatgcacgggctcggcggcgaggccacggtgctgttcgaccggatgacggcgagcggcgaggcgaggcccaacgaggtgaccttcatggcggccctggcggcgtgcagccactccggcatggtggaccgtgggctgcagctgttccacgccatggagcgcgaccacggcgtcgagccgacgccggacatcctcgcctgcgtcgtggacatcctggggcgcgccggcaggctggacgaggcgtacgccatggtgacctcgatggaggccggcgagcagcaggtgtcggcgtggagcacgatgctcggcgcgtgccggctccaccgcaacgtccacctcggcgagatcgccggcgagcggctgctggagctggagccggaggaggcgagccactatgtgctcctctgcaacatctactccgcggccgggcagtggactcgggcggcggaggtgaggagcaggatgcggcggcgaggcgtggcgaaggagcccgggtgcagctggatcgaggtcgacggcgcgatccaccggttcatggccggcgagtcggcgcacccggcgagcgaggaggtgcacgcgcacatggaggcgctctGgggggagatggtggcgcgcgggtacacgccggacacgtcgtgcgtgctccacgacatggacgacggcgacaaggcggccgtgctccggtgccacagcgagaagctcgccatcgcgttcgggctgctcagggcggcgccgggcgccaccattagggtggccaagaacctgagggtgtgcaacgactgccatgaggcggccaagttcttgtcaaagatggtcgggagggagatcgtgctcagggatgtcagaaggtttcaccatttccgcaacggccaatgctcctgtggggattactggtag
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| Protein seq | MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW |
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| Function | Pentatricopeptide repeat-containing protein At3g57430, chloroplastic [UniProtKB/Swiss-Prot:Q7Y211] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_04g0001030 | OsLaMu_04g0001030.01 | Chr04 | 1382248 | 1384504 | + | NAM | ||
| CDS seq | atgctcgccggcggccacccgctcacttccttcacgctcgtcagcgtcctccgcgccgtctcccacctccccGccgccgccgccgccgttcgcctcggccgcgaggcgcacgccttcgcgctcaagaacggcctcctccatggccaccagcgcttcgccttcaacgcgctcctctccatgtacgcccgcctcggcctcgtcgccgacgcgcagaggctcttcgccggcgccacgcccggccgcggcgacgtcgtcacgtggaacaccatggtcagcgtgctcgtgcagagcgggatgttcgacgaggccgtccagacgctctacgacatggtggcgctcggcgtgcggcccgacggcgtcacgttcgcgagcgcgctcccggcgtgctcgcggctagagctgctcgacgtcggccgggagatgcacgcctacgtcatcaaggacgacgagctcgccgccaactcgttcgtggcgagcgcgctggtggacatgtacgccacgcacgagcaggtggggaaggcgaggcaggtgttcgacatggtgcccgactccgggaagcagctcgggatgtggaacgccatgatctgcggctacgcgcaggccggcatggacgaggaggcgcttcgtctgttcgcgcggatggaggcagaggccggcttcgtgccctgcgagaccaccatggccagcgtgctgccggcgtgcgcgcgctccgaggcgttcgccggcaaggaggccgtgcacgggtacgtggtgaagcgcggcatggcgggcaaccggttcgtgcagaacgcgctcatggacatgtacgcgcgcctgggcaagacggacgtcgcccgccggatcttcgccatggtcgacctccctgacgtcgtctcctggaacaccctcatcaccggctgcgtcgtccagggccacgtcgccgacgcgttccagctcgcccgcgagatgcagcagctagaagaaggcggcgtggtgccgaacgccatcaccctgatgaccctcctgccggggtgcgccatcctggcggcgccggcgagggggaaggagatccacgggtacgcggtgaggcacgcgctggacacggacgtggccgtcgggagcgcgctggtggacatgtacgccaagtgcgggtgcctggcgctgtcgagggcggtgttcgaccggctgccgcggcggaacaccatcacctggaacgtcctcatcatggcgtacggcatgcacgggctcggcggcgaggccacggtgctgttcgaccggatgacggcgagcggcgaggcgaggcccaacgaggtgaccttcatggcggccctggcggcgtgcagccactccggcatggtggaccgtgggctgcagctgttccacgccatggagcgcgaccacggcgtcgagccgacgccggacatcctcgcctgcgtcgtggacatcctggggcgcgccggcaggctggacgaggcgtacgccatggtgacctcgatggaggccggcgagcagcaggtgtcggcgtggagcacgatgctcggcgcgtgccggctccaccgcaacgtccacctcggcgagatcgccggcgagcggctgctggagctggagccggaggaggcgagccactatgtgctcctctgcaacatctactccgcggccgggcagtggactcgggcggcggaggtgaggagcaggatgcggcggcgaggcgtggcgaaggagcccgggtgcagctggatcgaggtcgacggcgcgatccaccggttcatggccggcgagtcggcgcacccggcgagcgaggaggtgcacgcgcacatggaggcgctctGgggggagatggtggcgcgcgggtacacgccggacacgtcgtgcgtgctccacgacatggacgacggcgacaaggcggccgtgctccggtgccacagcgagaagctcgccatcgcgttcgggctgctcagggcggcgccgggcgccaccattagggtggccaagaacctgagggtgtgcaacgactgccatgaggcggccaagttcttgtcaaagatggtcgggagggagatcgtgctcagggatgtcagaaggtttcaccatttccgcaacggccaatgctcctgtggggattactggtag
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| Protein seq | MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.418836 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0118700 | RBH | 1.551445 | 0.898923 | 0.223490 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02850 | RBH | 1.121136 | 0.630762 | 0.063369 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0118700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000910 | RBH | 0.236720 | 0.0 | 0.458076 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000860 | RBH | 0.212158 | 0.0 | 0.228243 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000930 | RBH | 1.013696 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000950 | RBH | 0.250103 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000930 | RBH | 6.596344 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0022600 | RBH | 5.1611205 | 0.634914 | 0.459198 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001030 | RBH | 0.371627 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0022100 | RBH | 3.990135 | 0.886215 | 2.3519755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000900 | RBH | 0.236485 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000990 | RBH | 0.654622 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001010 | RBH | 12.473088 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000870 | RBH | 0.302144 | 0.087799 | 0.083545 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000970 | RBH | 0.494712 | 0.0 | 0.390650 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001030 | RBH | 0.853226 | 1.419407 | 0.0 |
