Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsN22_04G000970 OGI:04003930 | 16/16 N22 | OsN22RS2 | Gramene(+IsoSeq) Chr04:1323704-1326422
Gene Symbol -
DNA seq

ATGGCCATGGCCGCCGCCGCCGCAACTTCGCCGCCGCCGCCGCCGCCGCCACCGCCCACGCACCCACCTCCCACCTCGGCGACAGTCCGCTCCCTGACCGCCGCGGGCAACCACGCCGCCGCCCTCCGCGCGCTCTCCTCCATCACCATGGCGTCGCCGCAGCAGCAGCTCGACCACTCGGCGCTCCCGCCCGCCATCAAGTCCGCCGCGGCCCTCCGCGACGCCCGCTCCGCCCGCGCCATCCACGCCGCCGCGCTCCGCCGCGGCCTGCTCCACCGCCCCTCCCCGGCCGTCGCCAACGCGCTGCTCACCGCCTACGCGCGCTGCGGCCGCCTCGCCGCCGCGCTCGAGGTGTTCGGCTCCATCTCCGACTCCGCGCATGACGCCGTCTCCTTCAACTCCCTCATCTCCGCGCTCTGCCTCTTCCGCCGCTGGGACCACGCGCTCGCCGCGCTCCGCGCCATGCTCGCCGGCGGCCACCCGCTCACTTCCTTCACGCTCGTCAGCGTCCTCCGCGCCGTCTCCCACCTCCCCGCCGCCGCTGCCGCCGTTCGCCTCGGCCGCGAGGCGCACGCCTTCGCGCTCAAGAACGGCCTCCTCCATGGCCACCAGCGCTTCGCCTTCAACGCGCTCCTCTCCATGTACGCCCGCCTCGGCCTCGTCGCCGACGCGCAGAGGCTCTTCGCCGGCGCCACGCCCGGCCGCGGCGACGTCGTCACGTGGAACACCATGGTCAGCGTGCTCGTGCAGAGCGGGATGTTCGACGAGGCCGTCCAGACGCTCTACGACATGGTGGCGCTCGGCGTGCGGCCCGACGGCGTCACGTTCGCGAGCGCGCTCCCGGCGTGCTCGCGGCTAGAGCTGCTCGACGTCGGCCGGGAGATGCACGCCTACGTCATCAAGGACGACGAGCTCGCCGCCAACTCGTTCGTGGCGAGCGCGCTGGTGGACATGTACGCCACGCACGAGCAGGTGGGGAAGGCGAGGCAGGTGTTCGACATGGTGCCCGACTCCGGGAAGCAGCTCGGGATGTGGAACGCCATGATCTGCGGCTACGCGCAGGCCGGCATGGACGAGGAGGCGCTTCGTCTGTTCGCGCGGATGGAGGCAGAGGCCGGCTTCGTGCCCTGCGAGACCACCATGGCCAGCGTGCTGCCGGCGTGCGCGCGCTCCGAGGCGTTCGCCGGCAAGGAGGCCGTGCACGGGTACGTGGTGAAGCGCGGCATGGCGGGCAACCGGTTCGTGCAGAACGCGCTCATGGACATGTACGCGCGCCTCGGCAAGACGGACGTCGCCCGCCGGATCTTCGCCATGGTCGACCTCCCTGACGTCGTCTCCTGGAACACCCTCATCACCGGCTGCGTCGTCCAGGGCCACGTCGCCGACGCGTTCCAGCTCGCCCGCGAGATGCAGCAGCTAGAAGAAGGCGGCGTGGTGCCGAACGCCATCACCCTGATGACCCTCCTGCCGGGGTGCGCCATCCTGGCGGCGCCGGCGAGGGGGAAGGAGATCCACGGGTACGCGGTGAGGCACGCGCTGGACACGGACGTGGCCGTCGGGAGCGCGCTGGTGGACATGTACGCCAAGTGCGGGTGCCTGGCGCTGTCGAGGGCGGTGTTCGACCGGCTGCCGCGGCGGAACACCATCACCTGGAACGTCCTCATCATGGCGTACGGCATGCACGGGCTCGGCGGCGAGGCCACGGTGCTGTTCGACCGGATGACGGCGAGCGGCGAGGCGAGGCCCAACGAGGTGACCTTCATGGCGGCCCTGGCGGCGTGCAGCCACTCCGGCATGGTGGACCGTGGGCTGCAGCTGTTCCACGCCATGGAGCGCGACCACGGCGTCGAGCCGACGCCGGACATCCTCGCCTGCGTCGTGGACATCCTGGGGCGCGCCGGCAGGCTGGACGAGGCGTACGCCATGGTGACCTCGATGGAGGCCGGCGAGCAGCAGGTGTCGGCGTGGAGCACGATGCTCGGCGCGTGCCGGCTCCACCGCAACGTCCACCTCGGCGAGATCGCCGGCGAGCGGCTGCTGGAGCTGGAGCCGGAGGAGGCGAGCCACTATGTGCTCCTCTGCAACATCTACTCCGCGGCCGGGCAGTGGACTCGGGCGGCGGAGGTGAGGAGCAGGATGCGGCGGCGAGGCGTGGCGAAGGAGCCCGGGTGCAGCTGGATCGAGGTCGACGGCGCGATCCACCGGTTCATGGCCGGCGAGTCGGCGCACCCGGCGAGCGAGGAGGTGCACGCGCACATGGAGGCGCTCTGGGGGGAGATGGTGGCGCGCGGGTACACGCCGGACACGTCGTGCGTGCTCCACGACATGGACGACGGCGACAAGGCGGCCGTGCTCCGGTGCCACAGCGAGAAGCTCGCCATCGCGTTCGGGCTGCTCAGGGCGGCGCCGGGCGCCACCATTAGGGTGGCCAAGAACCTGAGGGTGTGCAACGACTGCCATGAGGCGGCCAAGTTCTTGTCAAAGATGGTCGGGAGGGAGATCGTGCTCAGGGATGTCAGAAGGTTTCACCATTTCCGCAACGGCCAATGCTCCTGTGGGGATTACTGGTAGTGAAGTACTAGTCTCTCAAATTAATGATGAATTATATATAGCATCTAATACACATGGTTAAGAACAAAAATGATATACTCATTCACATAAGGTGTTCTTGTAACTCGATTAATTTACATCAAATGTTCAGTTCATTTGTTGCCACTGG

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CDS seq

ATGGCCATGGCCGCCGCCGCCGCAACTTCGCCGCCGCCGCCGCCGCCGCCACCGCCCACGCACCCACCTCCCACCTCGGCGACAGTCCGCTCCCTGACCGCCGCGGGCAACCACGCCGCCGCCCTCCGCGCGCTCTCCTCCATCACCATGGCGTCGCCGCAGCAGCAGCTCGACCACTCGGCGCTCCCGCCCGCCATCAAGTCCGCCGCGGCCCTCCGCGACGCCCGCTCCGCCCGCGCCATCCACGCCGCCGCGCTCCGCCGCGGCCTGCTCCACCGCCCCTCCCCGGCCGTCGCCAACGCGCTGCTCACCGCCTACGCGCGCTGCGGCCGCCTCGCCGCCGCGCTCGAGGTGTTCGGCTCCATCTCCGACTCCGCGCATGACGCCGTCTCCTTCAACTCCCTCATCTCCGCGCTCTGCCTCTTCCGCCGCTGGGACCACGCGCTCGCCGCGCTCCGCGCCATGCTCGCCGGCGGCCACCCGCTCACTTCCTTCACGCTCGTCAGCGTCCTCCGCGCCGTCTCCCACCTCCCCGCCGCCGCTGCCGCCGTTCGCCTCGGCCGCGAGGCGCACGCCTTCGCGCTCAAGAACGGCCTCCTCCATGGCCACCAGCGCTTCGCCTTCAACGCGCTCCTCTCCATGTACGCCCGCCTCGGCCTCGTCGCCGACGCGCAGAGGCTCTTCGCCGGCGCCACGCCCGGCCGCGGCGACGTCGTCACGTGGAACACCATGGTCAGCGTGCTCGTGCAGAGCGGGATGTTCGACGAGGCCGTCCAGACGCTCTACGACATGGTGGCGCTCGGCGTGCGGCCCGACGGCGTCACGTTCGCGAGCGCGCTCCCGGCGTGCTCGCGGCTAGAGCTGCTCGACGTCGGCCGGGAGATGCACGCCTACGTCATCAAGGACGACGAGCTCGCCGCCAACTCGTTCGTGGCGAGCGCGCTGGTGGACATGTACGCCACGCACGAGCAGGTGGGGAAGGCGAGGCAGGTGTTCGACATGGTGCCCGACTCCGGGAAGCAGCTCGGGATGTGGAACGCCATGATCTGCGGCTACGCGCAGGCCGGCATGGACGAGGAGGCGCTTCGTCTGTTCGCGCGGATGGAGGCAGAGGCCGGCTTCGTGCCCTGCGAGACCACCATGGCCAGCGTGCTGCCGGCGTGCGCGCGCTCCGAGGCGTTCGCCGGCAAGGAGGCCGTGCACGGGTACGTGGTGAAGCGCGGCATGGCGGGCAACCGGTTCGTGCAGAACGCGCTCATGGACATGTACGCGCGCCTCGGCAAGACGGACGTCGCCCGCCGGATCTTCGCCATGGTCGACCTCCCTGACGTCGTCTCCTGGAACACCCTCATCACCGGCTGCGTCGTCCAGGGCCACGTCGCCGACGCGTTCCAGCTCGCCCGCGAGATGCAGCAGCTAGAAGAAGGCGGCGTGGTGCCGAACGCCATCACCCTGATGACCCTCCTGCCGGGGTGCGCCATCCTGGCGGCGCCGGCGAGGGGGAAGGAGATCCACGGGTACGCGGTGAGGCACGCGCTGGACACGGACGTGGCCGTCGGGAGCGCGCTGGTGGACATGTACGCCAAGTGCGGGTGCCTGGCGCTGTCGAGGGCGGTGTTCGACCGGCTGCCGCGGCGGAACACCATCACCTGGAACGTCCTCATCATGGCGTACGGCATGCACGGGCTCGGCGGCGAGGCCACGGTGCTGTTCGACCGGATGACGGCGAGCGGCGAGGCGAGGCCCAACGAGGTGACCTTCATGGCGGCCCTGGCGGCGTGCAGCCACTCCGGCATGGTGGACCGTGGGCTGCAGCTGTTCCACGCCATGGAGCGCGACCACGGCGTCGAGCCGACGCCGGACATCCTCGCCTGCGTCGTGGACATCCTGGGGCGCGCCGGCAGGCTGGACGAGGCGTACGCCATGGTGACCTCGATGGAGGCCGGCGAGCAGCAGGTGTCGGCGTGGAGCACGATGCTCGGCGCGTGCCGGCTCCACCGCAACGTCCACCTCGGCGAGATCGCCGGCGAGCGGCTGCTGGAGCTGGAGCCGGAGGAGGCGAGCCACTATGTGCTCCTCTGCAACATCTACTCCGCGGCCGGGCAGTGGACTCGGGCGGCGGAGGTGAGGAGCAGGATGCGGCGGCGAGGCGTGGCGAAGGAGCCCGGGTGCAGCTGGATCGAGGTCGACGGCGCGATCCACCGGTTCATGGCCGGCGAGTCGGCGCACCCGGCGAGCGAGGAGGTGCACGCGCACATGGAGGCGCTCTGGGGGGAGATGGTGGCGCGCGGGTACACGCCGGACACGTCGTGCGTGCTCCACGACATGGACGACGGCGACAAGGCGGCCGTGCTCCGGTGCCACAGCGAGAAGCTCGCCATCGCGTTCGGGCTGCTCAGGGCGGCGCCGGGCGCCACCATTAGGGTGGCCAAGAACCTGAGGGTGTGCAACGACTGCCATGAGGCGGCCAAGTTCTTGTCAAAGATGGTCGGGAGGGAGATCGTGCTCAGGGATGTCAGAAGGTTTCACCATTTCCGCAACGGCCAATGCTCCTGTGGGGATTACTGGTAG

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Protein seq

MAMAAAAATSPPPPPPPPPTHPPPTSATVRSLTAAGNHAAALRALSSITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW

Function Pentatricopeptide repeat-containing protein At3g57430, chloroplastic [UniProtKB/Swiss-Prot:Q7Y211]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsN22_04G000970 OsN22_04G000970_01 Chr04 1323704 1326422 + NAM
CDS seq

ATGGCCATGGCCGCCGCCGCCGCAACTTCGCCGCCGCCGCCGCCGCCGCCACCGCCCACGCACCCACCTCCCACCTCGGCGACAGTCCGCTCCCTGACCGCCGCGGGCAACCACGCCGCCGCCCTCCGCGCGCTCTCCTCCATCACCATGGCGTCGCCGCAGCAGCAGCTCGACCACTCGGCGCTCCCGCCCGCCATCAAGTCCGCCGCGGCCCTCCGCGACGCCCGCTCCGCCCGCGCCATCCACGCCGCCGCGCTCCGCCGCGGCCTGCTCCACCGCCCCTCCCCGGCCGTCGCCAACGCGCTGCTCACCGCCTACGCGCGCTGCGGCCGCCTCGCCGCCGCGCTCGAGGTGTTCGGCTCCATCTCCGACTCCGCGCATGACGCCGTCTCCTTCAACTCCCTCATCTCCGCGCTCTGCCTCTTCCGCCGCTGGGACCACGCGCTCGCCGCGCTCCGCGCCATGCTCGCCGGCGGCCACCCGCTCACTTCCTTCACGCTCGTCAGCGTCCTCCGCGCCGTCTCCCACCTCCCCGCCGCCGCTGCCGCCGTTCGCCTCGGCCGCGAGGCGCACGCCTTCGCGCTCAAGAACGGCCTCCTCCATGGCCACCAGCGCTTCGCCTTCAACGCGCTCCTCTCCATGTACGCCCGCCTCGGCCTCGTCGCCGACGCGCAGAGGCTCTTCGCCGGCGCCACGCCCGGCCGCGGCGACGTCGTCACGTGGAACACCATGGTCAGCGTGCTCGTGCAGAGCGGGATGTTCGACGAGGCCGTCCAGACGCTCTACGACATGGTGGCGCTCGGCGTGCGGCCCGACGGCGTCACGTTCGCGAGCGCGCTCCCGGCGTGCTCGCGGCTAGAGCTGCTCGACGTCGGCCGGGAGATGCACGCCTACGTCATCAAGGACGACGAGCTCGCCGCCAACTCGTTCGTGGCGAGCGCGCTGGTGGACATGTACGCCACGCACGAGCAGGTGGGGAAGGCGAGGCAGGTGTTCGACATGGTGCCCGACTCCGGGAAGCAGCTCGGGATGTGGAACGCCATGATCTGCGGCTACGCGCAGGCCGGCATGGACGAGGAGGCGCTTCGTCTGTTCGCGCGGATGGAGGCAGAGGCCGGCTTCGTGCCCTGCGAGACCACCATGGCCAGCGTGCTGCCGGCGTGCGCGCGCTCCGAGGCGTTCGCCGGCAAGGAGGCCGTGCACGGGTACGTGGTGAAGCGCGGCATGGCGGGCAACCGGTTCGTGCAGAACGCGCTCATGGACATGTACGCGCGCCTCGGCAAGACGGACGTCGCCCGCCGGATCTTCGCCATGGTCGACCTCCCTGACGTCGTCTCCTGGAACACCCTCATCACCGGCTGCGTCGTCCAGGGCCACGTCGCCGACGCGTTCCAGCTCGCCCGCGAGATGCAGCAGCTAGAAGAAGGCGGCGTGGTGCCGAACGCCATCACCCTGATGACCCTCCTGCCGGGGTGCGCCATCCTGGCGGCGCCGGCGAGGGGGAAGGAGATCCACGGGTACGCGGTGAGGCACGCGCTGGACACGGACGTGGCCGTCGGGAGCGCGCTGGTGGACATGTACGCCAAGTGCGGGTGCCTGGCGCTGTCGAGGGCGGTGTTCGACCGGCTGCCGCGGCGGAACACCATCACCTGGAACGTCCTCATCATGGCGTACGGCATGCACGGGCTCGGCGGCGAGGCCACGGTGCTGTTCGACCGGATGACGGCGAGCGGCGAGGCGAGGCCCAACGAGGTGACCTTCATGGCGGCCCTGGCGGCGTGCAGCCACTCCGGCATGGTGGACCGTGGGCTGCAGCTGTTCCACGCCATGGAGCGCGACCACGGCGTCGAGCCGACGCCGGACATCCTCGCCTGCGTCGTGGACATCCTGGGGCGCGCCGGCAGGCTGGACGAGGCGTACGCCATGGTGACCTCGATGGAGGCCGGCGAGCAGCAGGTGTCGGCGTGGAGCACGATGCTCGGCGCGTGCCGGCTCCACCGCAACGTCCACCTCGGCGAGATCGCCGGCGAGCGGCTGCTGGAGCTGGAGCCGGAGGAGGCGAGCCACTATGTGCTCCTCTGCAACATCTACTCCGCGGCCGGGCAGTGGACTCGGGCGGCGGAGGTGAGGAGCAGGATGCGGCGGCGAGGCGTGGCGAAGGAGCCCGGGTGCAGCTGGATCGAGGTCGACGGCGCGATCCACCGGTTCATGGCCGGCGAGTCGGCGCACCCGGCGAGCGAGGAGGTGCACGCGCACATGGAGGCGCTCTGGGGGGAGATGGTGGCGCGCGGGTACACGCCGGACACGTCGTGCGTGCTCCACGACATGGACGACGGCGACAAGGCGGCCGTGCTCCGGTGCCACAGCGAGAAGCTCGCCATCGCGTTCGGGCTGCTCAGGGCGGCGCCGGGCGCCACCATTAGGGTGGCCAAGAACCTGAGGGTGTGCAACGACTGCCATGAGGCGGCCAAGTTCTTGTCAAAGATGGTCGGGAGGGAGATCGTGCTCAGGGATGTCAGAAGGTTTCACCATTTCCGCAACGGCCAATGCTCCTGTGGGGATTACTGGTAG

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Protein seq

MAMAAAAATSPPPPPPPPPTHPPPTSATVRSLTAAGNHAAALRALSSITMASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.494712 0.0 0.390650

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0118700 RBH 1.551445 0.898923 0.223490
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g02850 RBH 1.121136 0.630762 0.063369
Nipponbare | IRGSP 1.0 | RAP-db Os04g0118700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0000910 RBH 0.236720 0.0 0.458076
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0000860 RBH 0.212158 0.0 0.228243
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0000930 RBH 1.013696 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0000950 RBH 0.250103 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0000930 RBH 6.596344 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0022600 RBH 5.1611205 0.634914 0.459198
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0001030 RBH 0.371627 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0022100 RBH 3.990135 0.886215 2.3519755
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0000900 RBH 0.236485 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0000990 RBH 0.654622 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0001010 RBH 12.473088 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0000870 RBH 0.302144 0.087799 0.083545
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0001030 RBH 0.418836 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0001030 RBH 0.853226 1.419407 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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