Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNip_03g0363100 | OGI:03037950 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:14143989-14146663 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATGAAGTACAGGAAGGGGGGCAACGCCCCCGCCACCGAGCCCGACGACGACGCCACGACGAAAGGAGGTCACGACGTGCCGCCGAGCATCAAGGTGGACATCGGTGAGTACCATGGAGGAGGTATCGGGAACGGGGACGGTGGCTCGGCCTCGCTCTTCGAGCCGCGGCCGGAGGAGACACCGGTGAGCCGGAGGAACGATCGCGGCGGCGGCGGCGGCGGGCGCGAGCCGCCGGAGAAGCGGCTCACGCTGTTCGCTCTCCGCCTCGCCGTGCTCGAGAAGGCGGCGAGCGGGCTCGGGAAGCTAGACTTCGTGTGGGCGACGGTGGTGCTCCTCGGCGGCTTCGCGAGCGCGCTCAGCACCACCGACTTCTGGTGCGTCACCGTCATCCTCGTTGGCTCCGGGGCGCGCGTCTTCGGCCGCAGCCACGAGCTGGAGTGGCAGCACCGCTCTACGCTCACCTCCTCCACCGCCGGTGGCGCGCTGCGCTCCACCTCCCGCCGCTTGCTCCGCAGCCTCGGGCACTCTCCCGCCGCCAACCCGACCGACGACGGCGGCGCCCGTGGCAGTGCGACCGAGACGCAGTTCCAGCACCAGATCGTCGCTCGCACGAAGCAGCGCGTTTGGCACGTGCCCGACGTGTCGCTACTCCCCTACACCGGCAGGTTGTTCGTCTCCAAGAACATCGGGAGGCTCTTCAGCTGGCTGCAGGTGCTCTCCGCCTTGGCCTGCGTCGCGCTCTCGGTGATGCGCCTATGGCGGCACGACTTCGGCGGCGACCAGCCCAACAAGCGGCCGGCGCTACTGCTGTTCTACACGTTGGCGTTGATCGAGGCGCTCATCTTCCTGCTCGAGCAGGCGTACTGGGTATGGATGTTCTCCCGGCAGAATCTGATCAAGACGGTGAGCGACGACTGCAAGCTCGGAGAGTACTACGGCCCCGACTCGCTCAAGCGCTTCTTCTTCGACGCCTACTCCCGCTGCATCACGGGGAGCATCTTCGACGGCACCAAGATGGACCTCGTCACCTTCGCCGAGGAGCTCATCCTGTCAGAGTTCCTCGGCAATCAGCTCATCGGCGTGCGCATCCTGCAGCAGTTCACCACCGAGGGCTCATCGGCCAACGCCGGGGAATCCAATCTCAACACGCTGCGCAACGTTGGCACGAACGCTCGCTCCATCGAGCGGCTCGTGGAGATGATCAACTGGAAGAGCCCCGGGGAGGAGGAGGTGCGCCGGTGCGCGGCCGAGGTGTTGTCCAAGCTCGCCGACAAGAGCCGGAACGCGCTCCGCGTGTCCGGCATCCCTGGCGCCATCGAGTCCGTCATGTCCCTGCTCTACACCGACGAGAGCGCGCCGGACTCCGCGGCGCCACACGACGTCTCGCCGGCGGCGCGGAGCTACGATCACCAGCAGTTCAAACTGCTCGGCCTGCTCATCCTCAAGAGGATCGCCAGGGACCACGACAACTGCGGCAAGATTGGGAACACCCGCGGCCTCCTCTCCAAGATCATCGAGCTCACGGACGCGTCGCCGGAGCTGCTCCACAACACGCGGGCGCCGGAGTCGCCGGTTCGCATCGTGAGGCGCGCGCTCAAGGTCGTCAAGATTCTGGTGTCCGCGACGAGCAGCACCGGCAAGATGCTCCGGCAGGAAGTCGCCGATAACGTGTTCACGGTGAGCAACCTGCGCGGCGTCCTGCAGCACGGGCAGCAGCACACGGCTCTGCAGAAGCTGGCCACGGAAATACTGTCGCACCTGGCCATGGACGCCAAGGGCAAGCAGGTGATCGTGGGCACCGGTGGGGTGGTCAAGCTGCTGCTGTCGATATTCGTCAACGGCGAGAAGGAGCTCGGCGCGGAGGCCGGCGAGGCGCTGGCGATGCTGGCGCTGGAGAGCCAGGCGAGCTGCGCGGCGATCCTCAAACAGGATGACGTGCTCGACCACCTCATGTCGGCGCTGGAGGGCGACGGCGGGCCGCGTCGCCTGAACGCGGCGAGGGTGCTGCGCAACCTGTGCGCGTACGCCGGCGAGAAGCATCGGCGGCGCCTCTCCACGGTGACCAAAGCGATGCCTACGGTATACATGTGTCTAATATATTTACACAAGAACCTTTCTTGAGTCGTGAGTCGTGACGTAATTTTGATTTGATTGTTAATTACTATACACTACATGTTTTGTATGATGACTTGTTGCTGAAGGTACTGAAGGCCACCATGACGGGGAGCGAGAGGACCCTCGAGGTGTTCGTCGGCCTGACGGTGCAGATCTGCAAGTTCATCGACGGCGTTCGGTTCGCCGGCGAGCTGTGCGGCGCCGGCATCGACGAGAGAAGCTACGTGGAGCGGCTGGCGAGCATCCTGCGGGAGCACCGGTACCCGGACATCACGGTGCCCCGGATGCGGCGGTTCGTGGTGCAGCAGGCCATCTGGCTCATGACCTCGTCCTCCGCCGCCGCCGCCTCCGCCGCCGCTGGCGCAGACTACGTATCGCTTCTCCGGGAGGCCGGGATGGAGCGGCTGCTGGAGTCCATCGCCGACACCACGTCGGAGCTGGAGTGCTACCACGCGTTCTCCGGCAGCGTGGGCATCAGCAAGCACCGGGAGAGCTTCTCCGCCGCCGTGGACGCCGCACTCGAGCTGCTCGGCGGCGATGGAGCTCGAGCTGAGGCCTGA
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CDS seq | ATGAAGTACAGGAAGGGGGGCAACGCCCCCGCCACCGAGCCCGACGACGACGCCACGACGAAAGGAGGTCACGACGTGCCGCCGAGCATCAAGGTGGACATCGGTGAGTACCATGGAGGAGGTATCGGGAACGGGGACGGTGGCTCGGCCTCGCTCTTCGAGCCGCGGCCGGAGGAGACACCGGTGAGCCGGAGGAACGATCGCGGCGGCGGCGGCGGCGGGCGCGAGCCGCCGGAGAAGCGGCTCACGCTGTTCGCTCTCCGCCTCGCCGTGCTCGAGAAGGCGGCGAGCGGGCTCGGGAAGCTAGACTTCGTGTGGGCGACGGTGGTGCTCCTCGGCGGCTTCGCGAGCGCGCTCAGCACCACCGACTTCTGGTGCGTCACCGTCATCCTCGTTGGCTCCGGGGCGCGCGTCTTCGGCCGCAGCCACGAGCTGGAGTGGCAGCACCGCTCTACGCTCACCTCCTCCACCGCCGGTGGCGCGCTGCGCTCCACCTCCCGCCGCTTGCTCCGCAGCCTCGGGCACTCTCCCGCCGCCAACCCGACCGACGACGGCGGCGCCCGTGGCAGTGCGACCGAGACGCAGTTCCAGCACCAGATCGTCGCTCGCACGAAGCAGCGCGTTTGGCACGTGCCCGACGTGTCGCTACTCCCCTACACCGGCAGGTTGTTCGTCTCCAAGAACATCGGGAGGCTCTTCAGCTGGCTGCAGGTGCTCTCCGCCTTGGCCTGCGTCGCGCTCTCGGTGATGCGCCTATGGCGGCACGACTTCGGCGGCGACCAGCCCAACAAGCGGCCGGCGCTACTGCTGTTCTACACGTTGGCGTTGATCGAGGCGCTCATCTTCCTGCTCGAGCAGGCGTACTGGGTATGGATGTTCTCCCGGCAGAATCTGATCAAGACGGTGAGCGACGACTGCAAGCTCGGAGAGTACTACGGCCCCGACTCGCTCAAGCGCTTCTTCTTCGACGCCTACTCCCGCTGCATCACGGGGAGCATCTTCGACGGCACCAAGATGGACCTCGTCACCTTCGCCGAGGAGCTCATCCTGTCAGAGTTCCTCGGCAATCAGCTCATCGGCGTGCGCATCCTGCAGCAGTTCACCACCGAGGGCTCATCGGCCAACGCCGGGGAATCCAATCTCAACACGCTGCGCAACGTTGGCACGAACGCTCGCTCCATCGAGCGGCTCGTGGAGATGATCAACTGGAAGAGCCCCGGGGAGGAGGAGGTGCGCCGGTGCGCGGCCGAGGTGTTGTCCAAGCTCGCCGACAAGAGCCGGAACGCGCTCCGCGTGTCCGGCATCCCTGGCGCCATCGAGTCCGTCATGTCCCTGCTCTACACCGACGAGAGCGCGCCGGACTCCGCGGCGCCACACGACGTCTCGCCGGCGGCGCGGAGCTACGATCACCAGCAGTTCAAACTGCTCGGCCTGCTCATCCTCAAGAGGATCGCCAGGGACCACGACAACTGCGGCAAGATTGGGAACACCCGCGGCCTCCTCTCCAAGATCATCGAGCTCACGGACGCGTCGCCGGAGCTGCTCCACAACACGCGGGCGCCGGAGTCGCCGGTTCGCATCGTGAGGCGCGCGCTCAAGGTCGTCAAGATTCTGGTGTCCGCGACGAGCAGCACCGGCAAGATGCTCCGGCAGGAAGTCGCCGATAACGTGTTCACGGTGAGCAACCTGCGCGGCGTCCTGCAGCACGGGCAGCAGCACACGGCTCTGCAGAAGCTGGCCACGGAAATACTGTCGCACCTGGCCATGGACGCCAAGGGCAAGCAGGTGATCGTGGGCACCGGTGGGGTGGTCAAGCTGCTGCTGTCGATATTCGTCAACGGCGAGAAGGAGCTCGGCGCGGAGGCCGGCGAGGCGCTGGCGATGCTGGCGCTGGAGAGCCAGGCGAGCTGCGCGGCGATCCTCAAACAGGATGACGTGCTCGACCACCTCATGTCGGCGCTGGAGGGCGACGGCGGGCCGCGTCGCCTGAACGCGGCGAGGGTGCTGCGCAACCTGTGCGCGTACGCCGGCGAGAAGCATCGGCGGCGCCTCTCCACGGTGACCAAAGCGATGCCTACGGTACTGAAGGCCACCATGACGGGGAGCGAGAGGACCCTCGAGGTGTTCGTCGGCCTGACGGTGCAGATCTGCAAGTTCATCGACGGCGTTCGGTTCGCCGGCGAGCTGTGCGGCGCCGGCATCGACGAGAGAAGCTACGTGGAGCGGCTGGCGAGCATCCTGCGGGAGCACCGGTACCCGGACATCACGGTGCCCCGGATGCGGCGGTTCGTGGTGCAGCAGGCCATCTGGCTCATGACCTCGTCCTCCGCCGCCGCCGCCTCCGCCGCCGCTGGCGCAGACTACGTATCGCTTCTCCGGGAGGCCGGGATGGAGCGGCTGCTGGAGTCCATCGCCGACACCACGTCGGAGCTGGAGTGCTACCACGCGTTCTCCGGCAGCGTGGGCATCAGCAAGCACCGGGAGAGCTTCTCCGCCGCCGTGGACGCCGCACTCGAGCTGCTCGGCGGCGATGGAGCTCGAGCTGAGGCCTGA
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Protein seq | MKYRKGGNAPATEPDDDATTKGGHDVPPSIKVDIGEYHGGGIGNGDGGSASLFEPRPEETPVSRRNDRGGGGGGREPPEKRLTLFALRLAVLEKAASGLGKLDFVWATVVLLGGFASALSTTDFWCVTVILVGSGARVFGRSHELEWQHRSTLTSSTAGGALRSTSRRLLRSLGHSPAANPTDDGGARGSATETQFQHQIVARTKQRVWHVPDVSLLPYTGRLFVSKNIGRLFSWLQVLSALACVALSVMRLWRHDFGGDQPNKRPALLLFYTLALIEALIFLLEQAYWVWMFSRQNLIKTVSDDCKLGEYYGPDSLKRFFFDAYSRCITGSIFDGTKMDLVTFAEELILSEFLGNQLIGVRILQQFTTEGSSANAGESNLNTLRNVGTNARSIERLVEMINWKSPGEEEVRRCAAEVLSKLADKSRNALRVSGIPGAIESVMSLLYTDESAPDSAAPHDVSPAARSYDHQQFKLLGLLILKRIARDHDNCGKIGNTRGLLSKIIELTDASPELLHNTRAPESPVRIVRRALKVVKILVSATSSTGKMLRQEVADNVFTVSNLRGVLQHGQQHTALQKLATEILSHLAMDAKGKQVIVGTGGVVKLLLSIFVNGEKELGAEAGEALAMLALESQASCAAILKQDDVLDHLMSALEGDGGPRRLNAARVLRNLCAYAGEKHRRRLSTVTKAMPTVLKATMTGSERTLEVFVGLTVQICKFIDGVRFAGELCGAGIDERSYVERLASILREHRYPDITVPRMRRFVVQQAIWLMTSSSAAAASAAAGADYVSLLREAGMERLLESIADTTSELECYHAFSGSVGISKHRESFSAAVDAALELLGGDGARAEA |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNip_03g0363100 | OsNip_03t0363100-00 | Chr03 | 14143989 | 14146663 | + | RAP2018-11-26 | ||
CDS seq | ATGAAGTACAGGAAGGGGGGCAACGCCCCCGCCACCGAGCCCGACGACGACGCCACGACGAAAGGAGGTCACGACGTGCCGCCGAGCATCAAGGTGGACATCGGTGAGTACCATGGAGGAGGTATCGGGAACGGGGACGGTGGCTCGGCCTCGCTCTTCGAGCCGCGGCCGGAGGAGACACCGGTGAGCCGGAGGAACGATCGCGGCGGCGGCGGCGGCGGGCGCGAGCCGCCGGAGAAGCGGCTCACGCTGTTCGCTCTCCGCCTCGCCGTGCTCGAGAAGGCGGCGAGCGGGCTCGGGAAGCTAGACTTCGTGTGGGCGACGGTGGTGCTCCTCGGCGGCTTCGCGAGCGCGCTCAGCACCACCGACTTCTGGTGCGTCACCGTCATCCTCGTTGGCTCCGGGGCGCGCGTCTTCGGCCGCAGCCACGAGCTGGAGTGGCAGCACCGCTCTACGCTCACCTCCTCCACCGCCGGTGGCGCGCTGCGCTCCACCTCCCGCCGCTTGCTCCGCAGCCTCGGGCACTCTCCCGCCGCCAACCCGACCGACGACGGCGGCGCCCGTGGCAGTGCGACCGAGACGCAGTTCCAGCACCAGATCGTCGCTCGCACGAAGCAGCGCGTTTGGCACGTGCCCGACGTGTCGCTACTCCCCTACACCGGCAGGTTGTTCGTCTCCAAGAACATCGGGAGGCTCTTCAGCTGGCTGCAGGTGCTCTCCGCCTTGGCCTGCGTCGCGCTCTCGGTGATGCGCCTATGGCGGCACGACTTCGGCGGCGACCAGCCCAACAAGCGGCCGGCGCTACTGCTGTTCTACACGTTGGCGTTGATCGAGGCGCTCATCTTCCTGCTCGAGCAGGCGTACTGGGTATGGATGTTCTCCCGGCAGAATCTGATCAAGACGGTGAGCGACGACTGCAAGCTCGGAGAGTACTACGGCCCCGACTCGCTCAAGCGCTTCTTCTTCGACGCCTACTCCCGCTGCATCACGGGGAGCATCTTCGACGGCACCAAGATGGACCTCGTCACCTTCGCCGAGGAGCTCATCCTGTCAGAGTTCCTCGGCAATCAGCTCATCGGCGTGCGCATCCTGCAGCAGTTCACCACCGAGGGCTCATCGGCCAACGCCGGGGAATCCAATCTCAACACGCTGCGCAACGTTGGCACGAACGCTCGCTCCATCGAGCGGCTCGTGGAGATGATCAACTGGAAGAGCCCCGGGGAGGAGGAGGTGCGCCGGTGCGCGGCCGAGGTGTTGTCCAAGCTCGCCGACAAGAGCCGGAACGCGCTCCGCGTGTCCGGCATCCCTGGCGCCATCGAGTCCGTCATGTCCCTGCTCTACACCGACGAGAGCGCGCCGGACTCCGCGGCGCCACACGACGTCTCGCCGGCGGCGCGGAGCTACGATCACCAGCAGTTCAAACTGCTCGGCCTGCTCATCCTCAAGAGGATCGCCAGGGACCACGACAACTGCGGCAAGATTGGGAACACCCGCGGCCTCCTCTCCAAGATCATCGAGCTCACGGACGCGTCGCCGGAGCTGCTCCACAACACGCGGGCGCCGGAGTCGCCGGTTCGCATCGTGAGGCGCGCGCTCAAGGTCGTCAAGATTCTGGTGTCCGCGACGAGCAGCACCGGCAAGATGCTCCGGCAGGAAGTCGCCGATAACGTGTTCACGGTGAGCAACCTGCGCGGCGTCCTGCAGCACGGGCAGCAGCACACGGCTCTGCAGAAGCTGGCCACGGAAATACTGTCGCACCTGGCCATGGACGCCAAGGGCAAGCAGGTGATCGTGGGCACCGGTGGGGTGGTCAAGCTGCTGCTGTCGATATTCGTCAACGGCGAGAAGGAGCTCGGCGCGGAGGCCGGCGAGGCGCTGGCGATGCTGGCGCTGGAGAGCCAGGCGAGCTGCGCGGCGATCCTCAAACAGGATGACGTGCTCGACCACCTCATGTCGGCGCTGGAGGGCGACGGCGGGCCGCGTCGCCTGAACGCGGCGAGGGTGCTGCGCAACCTGTGCGCGTACGCCGGCGAGAAGCATCGGCGGCGCCTCTCCACGGTGACCAAAGCGATGCCTACGGTACTGAAGGCCACCATGACGGGGAGCGAGAGGACCCTCGAGGTGTTCGTCGGCCTGACGGTGCAGATCTGCAAGTTCATCGACGGCGTTCGGTTCGCCGGCGAGCTGTGCGGCGCCGGCATCGACGAGAGAAGCTACGTGGAGCGGCTGGCGAGCATCCTGCGGGAGCACCGGTACCCGGACATCACGGTGCCCCGGATGCGGCGGTTCGTGGTGCAGCAGGCCATCTGGCTCATGACCTCGTCCTCCGCCGCCGCCGCCTCCGCCGCCGCTGGCGCAGACTACGTATCGCTTCTCCGGGAGGCCGGGATGGAGCGGCTGCTGGAGTCCATCGCCGACACCACGTCGGAGCTGGAGTGCTACCACGCGTTCTCCGGCAGCGTGGGCATCAGCAAGCACCGGGAGAGCTTCTCCGCCGCCGTGGACGCCGCACTCGAGCTGCTCGGCGGCGATGGAGCTCGAGCTGAGGCCTGA
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Protein seq | MKYRKGGNAPATEPDDDATTKGGHDVPPSIKVDIGEYHGGGIGNGDGGSASLFEPRPEETPVSRRNDRGGGGGGREPPEKRLTLFALRLAVLEKAASGLGKLDFVWATVVLLGGFASALSTTDFWCVTVILVGSGARVFGRSHELEWQHRSTLTSSTAGGALRSTSRRLLRSLGHSPAANPTDDGGARGSATETQFQHQIVARTKQRVWHVPDVSLLPYTGRLFVSKNIGRLFSWLQVLSALACVALSVMRLWRHDFGGDQPNKRPALLLFYTLALIEALIFLLEQAYWVWMFSRQNLIKTVSDDCKLGEYYGPDSLKRFFFDAYSRCITGSIFDGTKMDLVTFAEELILSEFLGNQLIGVRILQQFTTEGSSANAGESNLNTLRNVGTNARSIERLVEMINWKSPGEEEVRRCAAEVLSKLADKSRNALRVSGIPGAIESVMSLLYTDESAPDSAAPHDVSPAARSYDHQQFKLLGLLILKRIARDHDNCGKIGNTRGLLSKIIELTDASPELLHNTRAPESPVRIVRRALKVVKILVSATSSTGKMLRQEVADNVFTVSNLRGVLQHGQQHTALQKLATEILSHLAMDAKGKQVIVGTGGVVKLLLSIFVNGEKELGAEAGEALAMLALESQASCAAILKQDDVLDHLMSALEGDGGPRRLNAARVLRNLCAYAGEKHRRRLSTVTKAMPTVLKATMTGSERTLEVFVGLTVQICKFIDGVRFAGELCGAGIDERSYVERLASILREHRYPDITVPRMRRFVVQQAIWLMTSSSAAAASAAAGADYVSLLREAGMERLLESIADTTSELECYHAFSGSVGISKHRESFSAAVDAALELLGGDGARAEA
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g24820 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os03g0363100 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0018670 | RBH | 0.0 | 1.021057 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0018490 | RBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018530 | RBH | 0.0 | 2.619817 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018570 | RBH | 0.0 | 0.078801 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018340 | RBH | 0.0 | 0.000000 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0235100 | RBH | 0.0077445 | 1.5676405 | 0.013744 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018170 | RBH | 0.0 | 0.000000 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0235600 | RBH | 0.011419 | 5.6094045 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018390 | RBH | 0.107891 | 0.094829 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018410 | RBH | 0.495039 | 0.000000 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018490 | RBH | 6.340504 | 0.000000 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018340 | RBH | 0.801913 | 0.669633 | 0.078197 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018250 | RBH | 0.198381 | 4.657970 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018270 | RBH | 0.367516 | 0.344801 | 0.240164 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018220 | RBH | 0.0 | 1.572843 | 0.0 |