Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
Os03g0363100		OGI:03037950 \| 16/16			Nipponbare \| IRGSP 1.0 \| RAP-db			Chr03:14143989-14146663		Homologues MicroCollinearity RGI-JBrowse RAP-DB Ricevarmap2
Gene Symbol		-
DNA seq		ATGAAGTACAGGAAGGGGGGCAACGCCCCCGCCACCGAGCCCGACGACGACGCCACGACGAAAGGAGGTCACGACGTGCCGCCGAGCATCAAGGTGGACATCGGTGAGTACCATGGAGGAGGTATCGGGAACGGGGACGGTGGCTCGGCCTCGCTCTTCGAGCCGCGGCCGGAGGAGACACCGGTGAGCCGGAGGAACGATCGCGGCGGCGGCGGCGGCGGGCGCGAGCCGCCGGAGAAGCGGCTCACGCTGTTCGCTCTCCGCCTCGCCGTGCTCGAGAAGGCGGCGAGCGGGCTCGGGAAGCTAGACTTCGTGTGGGCGACGGTGGTGCTCCTCGGCGGCTTCGCGAGCGCGCTCAGCACCACCGACTTCTGGTGCGTCACCGTCATCCTCGTTGGCTCCGGGGCGCGCGTCTTCGGCCGCAGCCACGAGCTGGAGTGGCAGCACCGCTCTACGCTCACCTCCTCCACCGCCGGTGGCGCGCTGCGCTCCACCTCCCGCCGCTTGCTCCGCAGCCTCGGGCACTCTCCCGCCGCCAACCCGACCGACGACGGCGGCGCCCGTGGCAGTGCGACCGAGACGCAGTTCCAGCACCAGATCGTCGCTCGCACGAAGCAGCGCGTTTGGCACGTGCCCGACGTGTCGCTACTCCCCTACACCGGCAGGTTGTTCGTCTCCAAGAACATCGGGAGGCTCTTCAGCTGGCTGCAGGTGCTCTCCGCCTTGGCCTGCGTCGCGCTCTCGGTGATGCGCCTATGGCGGCACGACTTCGGCGGCGACCAGCCCAACAAGCGGCCGGCGCTACTGCTGTTCTACACGTTGGCGTTGATCGAGGCGCTCATCTTCCTGCTCGAGCAGGCGTACTGGGTATGGATGTTCTCCCGGCAGAATCTGATCAAGACGGTGAGCGACGACTGCAAGCTCGGAGAGTACTACGGCCCCGACTCGCTCAAGCGCTTCTTCTTCGACGCCTACTCCCGCTGCATCACGGGGAGCATCTTCGACGGCACCAAGATGGACCTCGTCACCTTCGCCGAGGAGCTCATCCTGTCAGAGTTCCTCGGCAATCAGCTCATCGGCGTGCGCATCCTGCAGCAGTTCACCACCGAGGGCTCATCGGCCAACGCCGGGGAATCCAATCTCAACACGCTGCGCAACGTTGGCACGAACGCTCGCTCCATCGAGCGGCTCGTGGAGATGATCAACTGGAAGAGCCCCGGGGAGGAGGAGGTGCGCCGGTGCGCGGCCGAGGTGTTGTCCAAGCTCGCCGACAAGAGCCGGAACGCGCTCCGCGTGTCCGGCATCCCTGGCGCCATCGAGTCCGTCATGTCCCTGCTCTACACCGACGAGAGCGCGCCGGACTCCGCGGCGCCACACGACGTCTCGCCGGCGGCGCGGAGCTACGATCACCAGCAGTTCAAACTGCTCGGCCTGCTCATCCTCAAGAGGATCGCCAGGGACCACGACAACTGCGGCAAGATTGGGAACACCCGCGGCCTCCTCTCCAAGATCATCGAGCTCACGGACGCGTCGCCGGAGCTGCTCCACAACACGCGGGCGCCGGAGTCGCCGGTTCGCATCGTGAGGCGCGCGCTCAAGGTCGTCAAGATTCTGGTGTCCGCGACGAGCAGCACCGGCAAGATGCTCCGGCAGGAAGTCGCCGATAACGTGTTCACGGTGAGCAACCTGCGCGGCGTCCTGCAGCACGGGCAGCAGCACACGGCTCTGCAGAAGCTGGCCACGGAAATACTGTCGCACCTGGCCATGGACGCCAAGGGCAAGCAGGTGATCGTGGGCACCGGTGGGGTGGTCAAGCTGCTGCTGTCGATATTCGTCAACGGCGAGAAGGAGCTCGGCGCGGAGGCCGGCGAGGCGCTGGCGATGCTGGCGCTGGAGAGCCAGGCGAGCTGCGCGGCGATCCTCAAACAGGATGACGTGCTCGACCACCTCATGTCGGCGCTGGAGGGCGACGGCGGGCCGCGTCGCCTGAACGCGGCGAGGGTGCTGCGCAACCTGTGCGCGTACGCCGGCGAGAAGCATCGGCGGCGCCTCTCCACGGTGACCAAAGCGATGCCTACGGTATACATGTGTCTAATATATTTACACAAGAACCTTTCTTGAGTCGTGAGTCGTGACGTAATTTTGATTTGATTGTTAATTACTATACACTACATGTTTTGTATGATGACTTGTTGCTGAAGGTACTGAAGGCCACCATGACGGGGAGCGAGAGGACCCTCGAGGTGTTCGTCGGCCTGACGGTGCAGATCTGCAAGTTCATCGACGGCGTTCGGTTCGCCGGCGAGCTGTGCGGCGCCGGCATCGACGAGAGAAGCTACGTGGAGCGGCTGGCGAGCATCCTGCGGGAGCACCGGTACCCGGACATCACGGTGCCCCGGATGCGGCGGTTCGTGGTGCAGCAGGCCATCTGGCTCATGACCTCGTCCTCCGCCGCCGCCGCCTCCGCCGCCGCTGGCGCAGACTACGTATCGCTTCTCCGGGAGGCCGGGATGGAGCGGCTGCTGGAGTCCATCGCCGACACCACGTCGGAGCTGGAGTGCTACCACGCGTTCTCCGGCAGCGTGGGCATCAGCAAGCACCGGGAGAGCTTCTCCGCCGCCGTGGACGCCGCACTCGAGCTGCTCGGCGGCGATGGAGCTCGAGCTGAGGCCTGA More
CDS seq		ATGAAGTACAGGAAGGGGGGCAACGCCCCCGCCACCGAGCCCGACGACGACGCCACGACGAAAGGAGGTCACGACGTGCCGCCGAGCATCAAGGTGGACATCGGTGAGTACCATGGAGGAGGTATCGGGAACGGGGACGGTGGCTCGGCCTCGCTCTTCGAGCCGCGGCCGGAGGAGACACCGGTGAGCCGGAGGAACGATCGCGGCGGCGGCGGCGGCGGGCGCGAGCCGCCGGAGAAGCGGCTCACGCTGTTCGCTCTCCGCCTCGCCGTGCTCGAGAAGGCGGCGAGCGGGCTCGGGAAGCTAGACTTCGTGTGGGCGACGGTGGTGCTCCTCGGCGGCTTCGCGAGCGCGCTCAGCACCACCGACTTCTGGTGCGTCACCGTCATCCTCGTTGGCTCCGGGGCGCGCGTCTTCGGCCGCAGCCACGAGCTGGAGTGGCAGCACCGCTCTACGCTCACCTCCTCCACCGCCGGTGGCGCGCTGCGCTCCACCTCCCGCCGCTTGCTCCGCAGCCTCGGGCACTCTCCCGCCGCCAACCCGACCGACGACGGCGGCGCCCGTGGCAGTGCGACCGAGACGCAGTTCCAGCACCAGATCGTCGCTCGCACGAAGCAGCGCGTTTGGCACGTGCCCGACGTGTCGCTACTCCCCTACACCGGCAGGTTGTTCGTCTCCAAGAACATCGGGAGGCTCTTCAGCTGGCTGCAGGTGCTCTCCGCCTTGGCCTGCGTCGCGCTCTCGGTGATGCGCCTATGGCGGCACGACTTCGGCGGCGACCAGCCCAACAAGCGGCCGGCGCTACTGCTGTTCTACACGTTGGCGTTGATCGAGGCGCTCATCTTCCTGCTCGAGCAGGCGTACTGGGTATGGATGTTCTCCCGGCAGAATCTGATCAAGACGGTGAGCGACGACTGCAAGCTCGGAGAGTACTACGGCCCCGACTCGCTCAAGCGCTTCTTCTTCGACGCCTACTCCCGCTGCATCACGGGGAGCATCTTCGACGGCACCAAGATGGACCTCGTCACCTTCGCCGAGGAGCTCATCCTGTCAGAGTTCCTCGGCAATCAGCTCATCGGCGTGCGCATCCTGCAGCAGTTCACCACCGAGGGCTCATCGGCCAACGCCGGGGAATCCAATCTCAACACGCTGCGCAACGTTGGCACGAACGCTCGCTCCATCGAGCGGCTCGTGGAGATGATCAACTGGAAGAGCCCCGGGGAGGAGGAGGTGCGCCGGTGCGCGGCCGAGGTGTTGTCCAAGCTCGCCGACAAGAGCCGGAACGCGCTCCGCGTGTCCGGCATCCCTGGCGCCATCGAGTCCGTCATGTCCCTGCTCTACACCGACGAGAGCGCGCCGGACTCCGCGGCGCCACACGACGTCTCGCCGGCGGCGCGGAGCTACGATCACCAGCAGTTCAAACTGCTCGGCCTGCTCATCCTCAAGAGGATCGCCAGGGACCACGACAACTGCGGCAAGATTGGGAACACCCGCGGCCTCCTCTCCAAGATCATCGAGCTCACGGACGCGTCGCCGGAGCTGCTCCACAACACGCGGGCGCCGGAGTCGCCGGTTCGCATCGTGAGGCGCGCGCTCAAGGTCGTCAAGATTCTGGTGTCCGCGACGAGCAGCACCGGCAAGATGCTCCGGCAGGAAGTCGCCGATAACGTGTTCACGGTGAGCAACCTGCGCGGCGTCCTGCAGCACGGGCAGCAGCACACGGCTCTGCAGAAGCTGGCCACGGAAATACTGTCGCACCTGGCCATGGACGCCAAGGGCAAGCAGGTGATCGTGGGCACCGGTGGGGTGGTCAAGCTGCTGCTGTCGATATTCGTCAACGGCGAGAAGGAGCTCGGCGCGGAGGCCGGCGAGGCGCTGGCGATGCTGGCGCTGGAGAGCCAGGCGAGCTGCGCGGCGATCCTCAAACAGGATGACGTGCTCGACCACCTCATGTCGGCGCTGGAGGGCGACGGCGGGCCGCGTCGCCTGAACGCGGCGAGGGTGCTGCGCAACCTGTGCGCGTACGCCGGCGAGAAGCATCGGCGGCGCCTCTCCACGGTGACCAAAGCGATGCCTACGGTACTGAAGGCCACCATGACGGGGAGCGAGAGGACCCTCGAGGTGTTCGTCGGCCTGACGGTGCAGATCTGCAAGTTCATCGACGGCGTTCGGTTCGCCGGCGAGCTGTGCGGCGCCGGCATCGACGAGAGAAGCTACGTGGAGCGGCTGGCGAGCATCCTGCGGGAGCACCGGTACCCGGACATCACGGTGCCCCGGATGCGGCGGTTCGTGGTGCAGCAGGCCATCTGGCTCATGACCTCGTCCTCCGCCGCCGCCGCCTCCGCCGCCGCTGGCGCAGACTACGTATCGCTTCTCCGGGAGGCCGGGATGGAGCGGCTGCTGGAGTCCATCGCCGACACCACGTCGGAGCTGGAGTGCTACCACGCGTTCTCCGGCAGCGTGGGCATCAGCAAGCACCGGGAGAGCTTCTCCGCCGCCGTGGACGCCGCACTCGAGCTGCTCGGCGGCGATGGAGCTCGAGCTGAGGCCTGA More
Protein seq		MKYRKGGNAPATEPDDDATTKGGHDVPPSIKVDIGEYHGGGIGNGDGGSASLFEPRPEETPVSRRNDRGGGGGGREPPEKRLTLFALRLAVLEKAASGLGKLDFVWATVVLLGGFASALSTTDFWCVTVILVGSGARVFGRSHELEWQHRSTLTSSTAGGALRSTSRRLLRSLGHSPAANPTDDGGARGSATETQFQHQIVARTKQRVWHVPDVSLLPYTGRLFVSKNIGRLFSWLQVLSALACVALSVMRLWRHDFGGDQPNKRPALLLFYTLALIEALIFLLEQAYWVWMFSRQNLIKTVSDDCKLGEYYGPDSLKRFFFDAYSRCITGSIFDGTKMDLVTFAEELILSEFLGNQLIGVRILQQFTTEGSSANAGESNLNTLRNVGTNARSIERLVEMINWKSPGEEEVRRCAAEVLSKLADKSRNALRVSGIPGAIESVMSLLYTDESAPDSAAPHDVSPAARSYDHQQFKLLGLLILKRIARDHDNCGKIGNTRGLLSKIIELTDASPELLHNTRAPESPVRIVRRALKVVKILVSATSSTGKMLRQEVADNVFTVSNLRGVLQHGQQHTALQKLATEILSHLAMDAKGKQVIVGTGGVVKLLLSIFVNGEKELGAEAGEALAMLALESQASCAAILKQDDVLDHLMSALEGDGGPRRLNAARVLRNLCAYAGEKHRRRLSTVTKAMPTVLKATMTGSERTLEVFVGLTVQICKFIDGVRFAGELCGAGIDERSYVERLASILREHRYPDITVPRMRRFVVQQAIWLMTSSSAAAASAAAGADYVSLLREAGMERLLESIADTTSELECYHAFSGSVGISKHRESFSAAVDAALELLGGDGARAEA
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
Os03g0363100	Os03t0363100-00	Chr03	14143989	14146663	+	irgsp1_rep
CDS seq	ATGAAGTACAGGAAGGGGGGCAACGCCCCCGCCACCGAGCCCGACGACGACGCCACGACGAAAGGAGGTCACGACGTGCCGCCGAGCATCAAGGTGGACATCGGTGAGTACCATGGAGGAGGTATCGGGAACGGGGACGGTGGCTCGGCCTCGCTCTTCGAGCCGCGGCCGGAGGAGACACCGGTGAGCCGGAGGAACGATCGCGGCGGCGGCGGCGGCGGGCGCGAGCCGCCGGAGAAGCGGCTCACGCTGTTCGCTCTCCGCCTCGCCGTGCTCGAGAAGGCGGCGAGCGGGCTCGGGAAGCTAGACTTCGTGTGGGCGACGGTGGTGCTCCTCGGCGGCTTCGCGAGCGCGCTCAGCACCACCGACTTCTGGTGCGTCACCGTCATCCTCGTTGGCTCCGGGGCGCGCGTCTTCGGCCGCAGCCACGAGCTGGAGTGGCAGCACCGCTCTACGCTCACCTCCTCCACCGCCGGTGGCGCGCTGCGCTCCACCTCCCGCCGCTTGCTCCGCAGCCTCGGGCACTCTCCCGCCGCCAACCCGACCGACGACGGCGGCGCCCGTGGCAGTGCGACCGAGACGCAGTTCCAGCACCAGATCGTCGCTCGCACGAAGCAGCGCGTTTGGCACGTGCCCGACGTGTCGCTACTCCCCTACACCGGCAGGTTGTTCGTCTCCAAGAACATCGGGAGGCTCTTCAGCTGGCTGCAGGTGCTCTCCGCCTTGGCCTGCGTCGCGCTCTCGGTGATGCGCCTATGGCGGCACGACTTCGGCGGCGACCAGCCCAACAAGCGGCCGGCGCTACTGCTGTTCTACACGTTGGCGTTGATCGAGGCGCTCATCTTCCTGCTCGAGCAGGCGTACTGGGTATGGATGTTCTCCCGGCAGAATCTGATCAAGACGGTGAGCGACGACTGCAAGCTCGGAGAGTACTACGGCCCCGACTCGCTCAAGCGCTTCTTCTTCGACGCCTACTCCCGCTGCATCACGGGGAGCATCTTCGACGGCACCAAGATGGACCTCGTCACCTTCGCCGAGGAGCTCATCCTGTCAGAGTTCCTCGGCAATCAGCTCATCGGCGTGCGCATCCTGCAGCAGTTCACCACCGAGGGCTCATCGGCCAACGCCGGGGAATCCAATCTCAACACGCTGCGCAACGTTGGCACGAACGCTCGCTCCATCGAGCGGCTCGTGGAGATGATCAACTGGAAGAGCCCCGGGGAGGAGGAGGTGCGCCGGTGCGCGGCCGAGGTGTTGTCCAAGCTCGCCGACAAGAGCCGGAACGCGCTCCGCGTGTCCGGCATCCCTGGCGCCATCGAGTCCGTCATGTCCCTGCTCTACACCGACGAGAGCGCGCCGGACTCCGCGGCGCCACACGACGTCTCGCCGGCGGCGCGGAGCTACGATCACCAGCAGTTCAAACTGCTCGGCCTGCTCATCCTCAAGAGGATCGCCAGGGACCACGACAACTGCGGCAAGATTGGGAACACCCGCGGCCTCCTCTCCAAGATCATCGAGCTCACGGACGCGTCGCCGGAGCTGCTCCACAACACGCGGGCGCCGGAGTCGCCGGTTCGCATCGTGAGGCGCGCGCTCAAGGTCGTCAAGATTCTGGTGTCCGCGACGAGCAGCACCGGCAAGATGCTCCGGCAGGAAGTCGCCGATAACGTGTTCACGGTGAGCAACCTGCGCGGCGTCCTGCAGCACGGGCAGCAGCACACGGCTCTGCAGAAGCTGGCCACGGAAATACTGTCGCACCTGGCCATGGACGCCAAGGGCAAGCAGGTGATCGTGGGCACCGGTGGGGTGGTCAAGCTGCTGCTGTCGATATTCGTCAACGGCGAGAAGGAGCTCGGCGCGGAGGCCGGCGAGGCGCTGGCGATGCTGGCGCTGGAGAGCCAGGCGAGCTGCGCGGCGATCCTCAAACAGGATGACGTGCTCGACCACCTCATGTCGGCGCTGGAGGGCGACGGCGGGCCGCGTCGCCTGAACGCGGCGAGGGTGCTGCGCAACCTGTGCGCGTACGCCGGCGAGAAGCATCGGCGGCGCCTCTCCACGGTGACCAAAGCGATGCCTACGGTACTGAAGGCCACCATGACGGGGAGCGAGAGGACCCTCGAGGTGTTCGTCGGCCTGACGGTGCAGATCTGCAAGTTCATCGACGGCGTTCGGTTCGCCGGCGAGCTGTGCGGCGCCGGCATCGACGAGAGAAGCTACGTGGAGCGGCTGGCGAGCATCCTGCGGGAGCACCGGTACCCGGACATCACGGTGCCCCGGATGCGGCGGTTCGTGGTGCAGCAGGCCATCTGGCTCATGACCTCGTCCTCCGCCGCCGCCGCCTCCGCCGCCGCTGGCGCAGACTACGTATCGCTTCTCCGGGAGGCCGGGATGGAGCGGCTGCTGGAGTCCATCGCCGACACCACGTCGGAGCTGGAGTGCTACCACGCGTTCTCCGGCAGCGTGGGCATCAGCAAGCACCGGGAGAGCTTCTCCGCCGCCGTGGACGCCGCACTCGAGCTGCTCGGCGGCGATGGAGCTCGAGCTGAGGCCTGA More
Protein seq	MKYRKGGNAPATEPDDDATTKGGHDVPPSIKVDIGEYHGGGIGNGDGGSASLFEPRPEETPVSRRNDRGGGGGGREPPEKRLTLFALRLAVLEKAASGLGKLDFVWATVVLLGGFASALSTTDFWCVTVILVGSGARVFGRSHELEWQHRSTLTSSTAGGALRSTSRRLLRSLGHSPAANPTDDGGARGSATETQFQHQIVARTKQRVWHVPDVSLLPYTGRLFVSKNIGRLFSWLQVLSALACVALSVMRLWRHDFGGDQPNKRPALLLFYTLALIEALIFLLEQAYWVWMFSRQNLIKTVSDDCKLGEYYGPDSLKRFFFDAYSRCITGSIFDGTKMDLVTFAEELILSEFLGNQLIGVRILQQFTTEGSSANAGESNLNTLRNVGTNARSIERLVEMINWKSPGEEEVRRCAAEVLSKLADKSRNALRVSGIPGAIESVMSLLYTDESAPDSAAPHDVSPAARSYDHQQFKLLGLLILKRIARDHDNCGKIGNTRGLLSKIIELTDASPELLHNTRAPESPVRIVRRALKVVKILVSATSSTGKMLRQEVADNVFTVSNLRGVLQHGQQHTALQKLATEILSHLAMDAKGKQVIVGTGGVVKLLLSIFVNGEKELGAEAGEALAMLALESQASCAAILKQDDVLDHLMSALEGDGGPRRLNAARVLRNLCAYAGEKHRRRLSTVTKAMPTVLKATMTGSERTLEVFVGLTVQICKFIDGVRFAGELCGAGIDERSYVERLASILREHRYPDITVPRMRRFVVQQAIWLMTSSSAAAASAAAGADYVSLLREAGMERLLESIADTTSELECYHAFSGSVGISKHRESFSAAVDAALELLGGDGARAEA More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_03g0363100	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os03g24820	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os03g0362200	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_03g0018670	RBH	0.0	1.021057	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_03g0018490	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_03g0018530	RBH	0.0	2.619817	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_03g0018570	RBH	0.0	0.078801	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_03g0018340	RBH	0.0	0.000000	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_03G0235100	RBH	0.0077445	1.5676405	0.013744
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_03g0018170	RBH	0.0	0.000000	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_03G0235600	RBH	0.011419	5.6094045	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_03g0018390	RBH	0.107891	0.094829	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_03g0018410	RBH	0.495039	0.000000	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_03g0018490	RBH	6.340504	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_03g0018340	RBH	0.801913	0.669633	0.078197
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_03g0018250	RBH	0.198381	4.657970	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_03G018270	RBH	0.367516	0.344801	0.240164
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_03g0018220	RBH	0.0	1.572843	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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