Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0763501 | OGI:02090970 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:32174923-32176156 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAACAAGCTGACAAGCGTGGACGACGGGGATGGGCGGCAGCTGGAGGAGGCGTGGCACGCGGAGGAGGCGGCGCTGGCGATGGCCGAGATGGAGAAGACAAGTGCCGCCCGGCCATGGAGGCGGCCGAGGCGGGCAGCATGGCATGGCGCACGGCGGTGCGGGGAAGGCAGCGGTCGGCGCGCACGACGGTGCGGCCGACGGTGGCGGGGGCGATCGGCGCGGAACGGCGCGGACAGGCAGGAGGCGGCGGAGAGGCGGGGACGATGGGGATGGGTGGCGGACTCGTCAGCACCTTCAGCAGGATGTTGCGGTCGAACAGGATGTTGGCCGGCTTGAGGTTGCGGTGCACGAGCGACTCCGGCTTGGTCTGGTGGAGGAACAGCAGCGCCGTGGTTATCTCCGCCGAGATCCTGAACCGCTGGCTCCACGGGATCGACGGGCGACGGCGTGCCGCAATCTTTTTTCTTTTTATTTTTGTCTCTGCCCGCTTCTGAATTTTCTGATCTGATTTGGTGCCGCGTTTTGGACTTTGGGAATGTGGTTATGTGCTGCATATGTAGTATATTGGTTTCTCTTTGGAATGTTGGGTAAAGGATTTTGTCGAGAGCTAACTTGCACACTTGTATATATGCATGGCCTTAATTTGCAGTCGATGGCTTGCATCATCAGTGATTTTGCAGCCGTCCACCGAGGCGCGGCGGTACCAGCAGCCGCCGCCGGCGTAGCTAGACACGTACGTGGTGCAGATGCCCAAGGACAAGGTGTTCCGCGTCCCGCCGCCGGAGAACGCGCGCCTCTTCCAGCACTACACCCGCCGCGCCAGGCGCCACGCCCGCTGCTCCTGCGTCCGCGTCTGCTCCTGGCTCCTCCTCATGCTCGTCTTGCTCGTCGTCGCGCTCACGGCCTTCGCCTCCGTCGTCTACCTCGTGTTCAAGCCCAGGCAGTCGGACTACACGCTCCAGGGCGCGAACCTTCTCGTCGGCCTCTCGGCATTGCGCCGCCGCTGCGCCTCCAGGTCGGCCAGCTGCTGCGCCGCCTCTCCGCCGCCGCCCGCCAGTCCGCGCCGTTCCGCGCCGACCGCCCCCGCCCACCGTCGGCCGCACCGCCGTGCACGCCGACCGCGCCGTCCACTGCCTTCCCCGCACCGTTGTGCGCCATGCCATGCTGCGCCGCCTCGGCCGCCTCCATGGCCGGGCGGCACTTGTCTTCTCCATCTCGGCCATCGCCAGCGC
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| CDS seq | ATGGCCGAGATGGAGAAGACAAGTGCCGCCCGGCCATGGAGGCGGCCGAGGCGGCGCAGCATGGCATGGCGCACAACGGTGCGGGGAAGGCAGTGGACGGCGCGGTCGGCGTGCACGGCGGTGCGGCCGACGGTGGGCGGGGGCGGTCGGCGCGGAACGGCGCGGACTGGCGGGCGGCGGCGGAGAGGCGGCGCAGCAGCTGGCCGACCTGGAGGCGCAGCGGCGGCGCAATGCCGAGAGGCCGACGAGAAGGTTCGCGCCCTGGAGCGTGTAGTCCGACTGCCTGGGCTTGAACACGAGGTAGACGACGGAGGCGAAGGCCGTGAGCGCGACGACGAGCAAGACGAGCATGAGGAGGAGCCAGGAGCAGACGCGGACGCAGGAGCAGCGGGCGTGGCGCCTGGCGCGGCGGGTGTAGTGCTGGAAGAGGCGCGCGTTCTCCGGCGGCGGGACGCGGAACACCTTATTGCGGCACGCCGTCGCCCGTCGATCCCGTGGAGCCAGCGGTTCAGGATCTCGGCGGAGATAACCACGGCGCTGCTGTTCCTCCACCAGACCAAGCCGGAGTCGCTCGTGCACCGCAACCTCAAGCCGGCCAACATCCTGTTCGACCGCAACATCCTGCTGAAGGTGCTGACGAGTCCGCCACCCATCCCCATCGTCCCCGCCTCTCCGCCGCCTCCTGCCTGTCCGCGCCGTTCCGCGCCGATCGCCCCCGCCACCGTCGGCCGCACCGTCGTGCGCGCCGACCGCTGCCTTCCCCGCACCGCCGTGCGCCATGCCATGCTGCCCGCCTCGGCCGCCTCCATGGCCGGGCGGCACTTGTCTTCTCCATCTCGGCCATCGCCAGCGCCGCCTCCTCCGCGTGCCACGCCTCCTCCAGCTGCCGCCCATCCCCGTCGTCCACGCTTGTCAGCTTGTTGA
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| Protein seq | MAEMEKTSAARPWRRPRRRSMAWRTTVRGRQWTARSACTAVRPTVGGGGRRGTARTGGRRRRGGAAAGRPGGAAAAQCREADEKVRALERVVRLPGLEHEVDDGGEGRERDDEQDEHEEEPGADADAGAAGVAPGAAGVVLEEARVLRRRDAEHLIAARRRPSIPWSQRFRISAEITTALLFLHQTKPESLVHRNLKPANILFDRNILLKVLTSPPPIPIVPASPPPPACPRRSAPIAPATVGRTVVRADRCLPRTAVRHAMLPASAASMAGRHLSSPSRPSPAPPPPRATPPPAAAHPRRPRLSAC |
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| Function | U-box domain-containing protein 35 [UniProtKB/Swiss-Prot:Q9SW11] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0763501 | OsNip_02t0763501-00 | Chr02 | 32174923 | 32176156 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCGAGATGGAGAAGACAAGTGCCGCCCGGCCATGGAGGCGGCCGAGGCGGCGCAGCATGGCATGGCGCACAACGGTGCGGGGAAGGCAGTGGACGGCGCGGTCGGCGTGCACGGCGGTGCGGCCGACGGTGGGCGGGGGCGGTCGGCGCGGAACGGCGCGGACTGGCGGGCGGCGGCGGAGAGGCGGCGCAGCAGCTGGCCGACCTGGAGGCGCAGCGGCGGCGCAATGCCGAGAGGCCGACGAGAAGGTTCGCGCCCTGGAGCGTGTAGTCCGACTGCCTGGGCTTGAACACGAGGTAGACGACGGAGGCGAAGGCCGTGAGCGCGACGACGAGCAAGACGAGCATGAGGAGGAGCCAGGAGCAGACGCGGACGCAGGAGCAGCGGGCGTGGCGCCTGGCGCGGCGGGTGTAGTGCTGGAAGAGGCGCGCGTTCTCCGGCGGCGGGACGCGGAACACCTTATTGCGGCACGCCGTCGCCCGTCGATCCCGTGGAGCCAGCGGTTCAGGATCTCGGCGGAGATAACCACGGCGCTGCTGTTCCTCCACCAGACCAAGCCGGAGTCGCTCGTGCACCGCAACCTCAAGCCGGCCAACATCCTGTTCGACCGCAACATCCTGCTGAAGGTGCTGACGAGTCCGCCACCCATCCCCATCGTCCCCGCCTCTCCGCCGCCTCCTGCCTGTCCGCGCCGTTCCGCGCCGATCGCCCCCGCCACCGTCGGCCGCACCGTCGTGCGCGCCGACCGCTGCCTTCCCCGCACCGCCGTGCGCCATGCCATGCTGCCCGCCTCGGCCGCCTCCATGGCCGGGCGGCACTTGTCTTCTCCATCTCGGCCATCGCCAGCGCCGCCTCCTCCGCGTGCCACGCCTCCTCCAGCTGCCGCCCATCCCCGTCGTCCACGCTTGTCAGCTTGTTGA
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| Protein seq | MAEMEKTSAARPWRRPRRRSMAWRTTVRGRQWTARSACTAVRPTVGGGGRRGTARTGGRRRRGGAAAGRPGGAAAAQCREADEKVRALERVVRLPGLEHEVDDGGEGRERDDEQDEHEEEPGADADAGAAGVAPGAAGVVLEEARVLRRRDAEHLIAARRRPSIPWSQRFRISAEITTALLFLHQTKPESLVHRNLKPANILFDRNILLKVLTSPPPIPIVPASPPPPACPRRSAPIAPATVGRTVVRADRCLPRTAVRHAMLPASAASMAGRHLSSPSRPSPAPPPPRATPPPAAAHPRRPRLSAC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g52580 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0763501 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0008600 | SBH | 0.0 | 0.000000 | 1.417019 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036450 | SBH | 0.0 | 0.0 | 1.704875 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0008490 | SBH | 0.0 | 0.0 | 2.703409 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008420 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0008560 | SBH | 0.0 | 0.0 | 1.557517 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0547100 | SBH | 0.045636 | 0.967103 | 1.127438 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0008400 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0577800 | SBH | 0.0989195 | 0.8402555 | 0.3098835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008820 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0008490 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008800 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0008770 | SBH | 0.0 | 0.000000 | 0.317093 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008540 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G008680 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026760 | SBH | 0.0 | 9.987422 | 0.000000 |
