Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0036450 | OGI:02094390 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:33794747-33799949 | ||||||||
| Gene Symbol | RLCK87, OsRLCK87 | ||||||||||
| DNA seq | gacgtgtttattaatagtcaatacaggtcagaggaacaggagcaaaggtctaaatgagatccccatgctctatcatgaacaatggccttccctccccatttcaatctttcagtggatgaacaatcaaccagcagagtttttctgaagacattggtagcagagctgtgcgcaggaaggaaaatggcatggaactagtacaggatagcaaaaagcttcgagcactagagcaacgaggaagggggaactaaattggttaatcggttagccctggcaatgggcaaggacggcggcgaccccggcggcggcgggtacccgctggtggcggtgtgcatcgacaaggacaagaacagccagaacgccctcaagtacgccacggagtcgctcgcccacaagggccagaccatcgtgctcgtccacgtccacaccaagggctcctcaggcaaccactgcatcccccggacccccgccgctgaaatctctcgtcggatttcaagtttttctctgacgatgcacgcgcgcgtgtgcaggtggcgtggaggacgcggccgggtacaaacagccgtcggacccgcagatgaaggacctgttcctcccgttccgctgcttctgcacgcggaaagacgtaacgcgacgcgtccattctcgtacggtgcagcacggcgtggtgcaataactaatgggggtttttctcgtggctgggctcgcagatccactgcaaggacgtggtgctggacgaccacgacgtgtccaaggcgatcgtcgagttcgccgcgcacgccgccatcgagaagctcgtcgtcggcgccaccgccaggggcggcttcgtcaggtaaccaaccaaccaattcagtctactcatctcatctcgatcgatcaactctcaaaaagcagctgtcgaggaaaccggggtgaatttggtttgtggcatttgaaaagattcaaggcggagatctcgagcagcatctccaagacggcgccggacttcagcaccgtgtacgtcgtctccaaaggcggcaaggtgacgtcggtgcggcaggccgtccgccaggcgccggccgtctcgccgctccgcacaatgatccagggccccaagcccgataacgtgtccacgcagaaatggacgccgccgcctcctccgtccacgacgagacctgacatcgccgggacaccgaagatacaggacaacttcattatgtaagtcgaggggaaagtattttctatgcctagacgtcacgacacctaggtgtatacatgcggtttaaataataatataaaaaattataaaatttgacgagatagattgtgaatataaaacattatacaaactggcaaatataaatttgatttacatataaagaaataaaaataacaaattttatatgcattgtacatgtaatattaactacttcctctgttttataatgttttatattataagatttcctaccattgtttacattcatatatatgttaatgaatatatatgtgtgtgggggggggcaatgttagaaagtcttataacctgaaatggatgtagtatatatctttttttaaggaacataatattactatctgatttaggccctttttgtttaggcttagatttattggcctagacttttaagtcagcttattggcttatatgatttataagccggtggatttaatgtcctaagtttagtagttgagtcatacatctacctcacataaaccaaaaaagcttctccaacctagcttttggcttaatagtgttaaagtggtttatggcttcaaaaaagccaaatgaaaaagctgcttgtttgtttaggcttagacttttcgacttataagttggcttataaacctaaacaaagagggccttagtctagatgtcttgtatgtttgtctataaaattatatcatcttaattgatattattttttaaatcttttttctataactatttgagtagtatgcaaataacgggtgccgacacctagatgtagaaaaactcattccgtaagcttaagctagtttctataactatttgagcagtatacaaataacgggtgctgacacctagatgtagaaaaactctttccgtaagcttaagctaggggggaagaatggatgagaaacaagaagctaagcttgtggcatttgtgtggagacaggtcgccgttcgcgaggggggcgaacacgtcggtgaggaaggcgttcccggactactcgatgccggagtcgtcggacatctccttcatcagctccggccctcgccggagcttggacctgtacccgccgcggctgtcgtccggttcggacgcccacgaccaccacagcttcgaggcgacgcggccgcccagcatgtggggcggcgactccttcggcagcgactcccagtccagcaactcctccttcgcttcctcccttcccatggtacacacaataatgcaagctagctagctagtacaggctagatttttgtttgcatcagatgagatttcgtcgccatgatcgatcgttgtgatcgatctctcacgtacgtacatataccaggaggacatggaggccgagatgaagcggctgcggcttgagctcaagcagaccatggacatgtacagcaccgcgtgcaaggaggcgctcacggctaaacagaaggttagcgatgaaccattgatcaaccaagaaattataagcatcgcaactttattgttgtttgcatatcatttagaccctgtttagatgggacaaaaactttttagtcctatcacatcggatgtttagacactaattttaaatattaaacgtagattattaataaaacccattctataaccttggattaattcgtgagacgaatctattgagcctaattaatccatgattagcctatgtgatgctacagtaaacatgcgctaattatagattaattaggtttaaaaaatttgtcacgcgaattagctctcatttatgtaattagttttataagatgcctatgtttaatactccaaattcatccgatataacagggactgaagtagtttagtcactggatccaaacaccacaccttaaaaggttataaaaaagttgaaaagaaatttaaaagatagattatatgtgataggtcactctacaaacatgcaggttaaaattcaacttctataaattaaaaatatattaattaattaaactatatatagttaatgtgtatccacatttaaatttgttttttcgttgcagttaaatttgatttgtggatggatttatcacatattaatctattttgttttttcctcatatttttttcataaccatttgggttatatgcaatcaatgagtgaatctcctatcaagaatttagaatagtttcccacgttattgacatgttacgtttggattgtggaagttgagaagagttgatgtgatcgagtgtttgatgatgcgtgcaggcgatggagctgcagcgctggaagacggatgaggagcagcggtcgcacgagacgcggctgacggaggagtcggccatggcgctgatcgagcaggagaaggcgaaggcgagggcggccatcgaggcggcggaggcgtcgcagcggctggcggagatggaggcgcagaagcggatcagcgcggagatgaaggcgctcaaggagaccgaggagcgtctcaagtccatgggcggcggcggctcgcgcggcgcggtccggtaccgcaagtacaccatcgaggagatcgagctcgccaccgagcacttcgccgacggccgcaagatcggcgagggcggctatggcccggtgtacaagggccacctggaccacacgccggtggccatcaaggtgctccgccccgacgccgcccaggggaggtcgcagttcaaccaggaggtggaggtgctcagctgcatccgccaccccaacatggtgctcctcctcggcgcgtgcccggagtacggctgcctcgtctacgagtacatggccaacggcagcctcgacgactgcctgttccggcgcggcggcggcccggtcatcccgtggcagcaccgcttccgcatcgccgccgagatcgccaccggcttgctcttcctccaccagaccaagcccgagccgctcgtccaccgcgacctcaagccgggcaacatcctcctcgaccgcaactacgtcagcaagatcagcgacgtcggcctcgcccgcctcgtcccgccctccgtcgccgacagcgtcacgcagtgccacatgacgtcggcggcggggaccttctgctacatcgacccggagtaccagcagacgggcatgctcggcgtcaagtcggacgtctactccctcggcgtcatgctgctccagatcgtcaccgcgaagccgcccatggggctcacccaccacgtcgcgcgcgcgctcgaccacggcaccatcgtcgacatgctcgacccggccgtccacgactggcccgtcgacgaggcgcgctgcttcgccgagatatccatccgctgctgcgagctccgccggaaggaccgccccgacctcgccaccgtcgtgctcccggagctcaaccgcctccgcgccctcggcgaggacaacatgcagctctgcaacaccatgagcggcggcggccggagcagcatgcacagctcgccctacaacagcaactcctccatgcatcaacctcatcgacaaaccgtaagatcaatccatccaccatctcctgcaaatctcgttgcaacttgcaagcaagaacatcaattgaatctttgttgcttcatctgattaatcaccaggatatggcgattgagcacagcgtagggaggtcgtcgtacgacgcggacacgagccagcaagccatgcagggacgaaggctcaactacaactaaattaaagctgacctgagttttgcactacgactgcaataggcgttactgcaaggctcacttaagcatgatttttatccaatgcttctcctgattaatctgagtaggaagctactgtttgttaatgcagagacagagagccatgttcatgcctacatgttggtgtggttgtaaactagttgtcgatcgtttcttgatcctcctgttgtttgtaaatgacctgacattttaaaactaatcaaaatgctgacagttcatccagaagctcggaaaaagggccaccaaagatctggtcttatacaggttcagccgtcatagctacattatcatctggaccggatttcttctgttcatatctttgagct
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| CDS seq | atgggcaaggacggcggcgaccccggcggcggcgggtacccgctggtggcggtgtgcatcgacaaggacaagaacagccagaacgccctcaagtacgccacggagtcgctcgcccacaagggccagaccatcgtgctcgtccacgtccacaccaagggctcctcaggtggcgtggaggacgcggccgggtacaaacagccgtcggacccgcagatgaaggacctgttcctcccgttccgctgcttctgcacgcggaaagacatccactgcaaggacgtggtgctggacgaccacgacgtgtccaaggcgatcgtcgagttcgccgcgcacgccgccatcgagaagctcgtcgtcggcgccaccgccaggggcggcttcgtcagattcaaggcggagatctcgagcagcatctccaagacggcgccggacttcagcaccgtgtacgtcgtctccaaaggcggcaaggtgacgtcggtgcggcaggccgtccgccaggcgccggccgtctcgccgctccgcacaatgatccagggccccaagcccgataacgtgtcgccgttcgcgaggggggcgaacacgtcggtgaggaaggcgttcccggactactcgatgccggagtcgtcggacatctccttcatcagctccggccctcgccggagcttggacctgtacccgccgcggctgtcgtccggttcggacgcccacgaccaccacagcttcgaggcgacgcggccgcccagcatgtggggcggcgactccttcggcagcgactcccagtccagcaactcctccttcgcttcctcccttcccatggaggacatggaggccgagatgaagcggctgcggcttgagctcaagcagaccatggacatgtacagcaccgcgtgcaaggaggcgctcacggctaaacagaaggcgatggagctgcagcgctggaagacggatgaggagcagcggtcgcacgagacgcggctgacggaggagtcggccatggcgctgatcgagcaggagaaggcgaaggcgagggcggccatcgaggcggcggaggcgtcgcagcggctggcggagatggaggcgcagaagcggatcagcgcggagatgaaggcgctcaaggagaccgaggagcgtctcaagtccatgggcggcggcggctcgcgcggcgcggtccggtaccgcaagtacaccatcgaggagatcgagctcgccaccgagcacttcgccgacggccgcaagatcggcgagggcggctatggcccggtgtacaagggccacctggaccacacgccggtggccatcaaggtgctccgccccgacgccgcccaggggaggtcgcagttcaaccaggaggtggaggtgctcagctgcatccgccaccccaacatggtgctcctcctcggcgcgtgcccggagtacggctgcctcgtctacgagtacatggccaacggcagcctcgacgactgcctgttccggcgcggcggcggcccggtcatcccgtggcagcaccgcttccgcatcgccgccgagatcgccaccggcttgctcttcctccaccagaccaagcccgagccgctcgtccaccgcgacctcaagccgggcaacatcctcctcgaccgcaactacgtcagcaagatcagcgacgtcggcctcgcccgcctcgtcccgccctccgtcgccgacagcgtcacgcagtgccacatgacgtcggcggcggggaccttctgctacatcgacccggagtaccagcagacgggcatgctcggcgtcaagtcggacgtctactccctcggcgtcatgctgctccagatcgtcaccgcgaagccgcccatggggctcacccaccacgtcgcgcgcgcgctcgaccacggcaccatcgtcgacatgctcgacccggccgtccacgactggcccgtcgacgaggcgcgctgcttcgccgagatatccatccgctgctgcgagctccgccggaaggaccgccccgacctcgccaccgtcgtgctcccggagctcaaccgcctccgcgccctcggcgaggacaacatgcagctctgcaacaccatgagcggcggcggccggagcagcatgcacagctcgccctacaacagcaactcctccatgcatcaacctcatcgacaaaccgatatggcgattgagcacagcgtagggaggtcgtcgtacgacgcggacacgagccagcaagccatgcagggacgaaggctcaactacaactaa
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| Protein seq | MGKDGGDPGGGGYPLVAVCIDKDKNSQNALKYATESLAHKGQTIVLVHVHTKGSSGGVEDAAGYKQPSDPQMKDLFLPFRCFCTRKDIHCKDVVLDDHDVSKAIVEFAAHAAIEKLVVGATARGGFVRFKAEISSSISKTAPDFSTVYVVSKGGKVTSVRQAVRQAPAVSPLRTMIQGPKPDNVSPFARGANTSVRKAFPDYSMPESSDISFISSGPRRSLDLYPPRLSSGSDAHDHHSFEATRPPSMWGGDSFGSDSQSSNSSFASSLPMEDMEAEMKRLRLELKQTMDMYSTACKEALTAKQKAMELQRWKTDEEQRSHETRLTEESAMALIEQEKAKARAAIEAAEASQRLAEMEAQKRISAEMKALKETEERLKSMGGGGSRGAVRYRKYTIEEIELATEHFADGRKIGEGGYGPVYKGHLDHTPVAIKVLRPDAAQGRSQFNQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGGGPVIPWQHRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSVTQCHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGVMLLQIVTAKPPMGLTHHVARALDHGTIVDMLDPAVHDWPVDEARCFAEISIRCCELRRKDRPDLATVVLPELNRLRALGEDNMQLCNTMSGGGRSSMHSSPYNSNSSMHQPHRQTDMAIEHSVGRSSYDADTSQQAMQGRRLNYN |
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| Function | U-box domain-containing protein 35 [UniProtKB/Swiss-Prot:Q9SW11] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0036450 | OsKeNa_02g0036450.01 | Chr02 | 33794828 | 33799949 | + | NAM | ||
| CDS seq | atgggcaaggacggcggcgaccccggcggcggcgggtacccgctggtggcggtgtgcatcgacaaggacaagaacagccagaacgccctcaagtacgccacggagtcgctcgcccacaagggccagaccatcgtgctcgtccacgtccacaccaagggctcctcaggtggcgtggaggacgcggccgggtacaaacagccgtcggacccgcagatgaaggacctgttcctcccgttccgctgcttctgcacgcggaaagacatccactgcaaggacgtggtgctggacgaccacgacgtgtccaaggcgatcgtcgagttcgccgcgcacgccgccatcgagaagctcgtcgtcggcgccaccgccaggggcggcttcgtcagattcaaggcggagatctcgagcagcatctccaagacggcgccggacttcagcaccgtgtacgtcgtctccaaaggcggcaaggtgacgtcggtgcggcaggccgtccgccaggcgccggccgtctcgccgctccgcacaatgatccagggccccaagcccgataacgtgtcgccgttcgcgaggggggcgaacacgtcggtgaggaaggcgttcccggactactcgatgccggagtcgtcggacatctccttcatcagctccggccctcgccggagcttggacctgtacccgccgcggctgtcgtccggttcggacgcccacgaccaccacagcttcgaggcgacgcggccgcccagcatgtggggcggcgactccttcggcagcgactcccagtccagcaactcctccttcgcttcctcccttcccatggaggacatggaggccgagatgaagcggctgcggcttgagctcaagcagaccatggacatgtacagcaccgcgtgcaaggaggcgctcacggctaaacagaaggcgatggagctgcagcgctggaagacggatgaggagcagcggtcgcacgagacgcggctgacggaggagtcggccatggcgctgatcgagcaggagaaggcgaaggcgagggcggccatcgaggcggcggaggcgtcgcagcggctggcggagatggaggcgcagaagcggatcagcgcggagatgaaggcgctcaaggagaccgaggagcgtctcaagtccatgggcggcggcggctcgcgcggcgcggtccggtaccgcaagtacaccatcgaggagatcgagctcgccaccgagcacttcgccgacggccgcaagatcggcgagggcggctatggcccggtgtacaagggccacctggaccacacgccggtggccatcaaggtgctccgccccgacgccgcccaggggaggtcgcagttcaaccaggaggtggaggtgctcagctgcatccgccaccccaacatggtgctcctcctcggcgcgtgcccggagtacggctgcctcgtctacgagtacatggccaacggcagcctcgacgactgcctgttccggcgcggcggcggcccggtcatcccgtggcagcaccgcttccgcatcgccgccgagatcgccaccggcttgctcttcctccaccagaccaagcccgagccgctcgtccaccgcgacctcaagccgggcaacatcctcctcgaccgcaactacgtcagcaagatcagcgacgtcggcctcgcccgcctcgtcccgccctccgtcgccgacagcgtcacgcagtgccacatgacgtcggcggcggggaccttctgctacatcgacccggagtaccagcagacgggcatgctcggcgtcaagtcggacgtctactccctcggcgtcatgctgctccagatcgtcaccgcgaagccgcccatggggctcacccaccacgtcgcgcgcgcgctcgaccacggcaccatcgtcgacatgctcgacccggccgtccacgactggcccgtcgacgaggcgcgctgcttcgccgagatatccatccgctgctgcgagctccgccggaaggaccgccccgacctcgccaccgtcgtgctcccggagctcaaccgcctccgcgccctcggcgaggacaacatgcagctctgcaacaccatgagcggcggcggccggagcagcatgcacagctcgccctacaacagcaactcctccatgcatcaacctcatcgacaaaccgatatggcgattgagcacagcgtagggaggtcgtcgtacgacgcggacacgagccagcaagccatgcagggacgaaggctcaactacaactaa
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| Protein seq | MGKDGGDPGGGGYPLVAVCIDKDKNSQNALKYATESLAHKGQTIVLVHVHTKGSSGGVEDAAGYKQPSDPQMKDLFLPFRCFCTRKDIHCKDVVLDDHDVSKAIVEFAAHAAIEKLVVGATARGGFVRFKAEISSSISKTAPDFSTVYVVSKGGKVTSVRQAVRQAPAVSPLRTMIQGPKPDNVSPFARGANTSVRKAFPDYSMPESSDISFISSGPRRSLDLYPPRLSSGSDAHDHHSFEATRPPSMWGGDSFGSDSQSSNSSFASSLPMEDMEAEMKRLRLELKQTMDMYSTACKEALTAKQKAMELQRWKTDEEQRSHETRLTEESAMALIEQEKAKARAAIEAAEASQRLAEMEAQKRISAEMKALKETEERLKSMGGGGSRGAVRYRKYTIEEIELATEHFADGRKIGEGGYGPVYKGHLDHTPVAIKVLRPDAAQGRSQFNQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDCLFRRGGGPVIPWQHRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSVTQCHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGVMLLQIVTAKPPMGLTHHVARALDHGTIVDMLDPAVHDWPVDEARCFAEISIRCCELRRKDRPDLATVVLPELNRLRALGEDNMQLCNTMSGGGRSSMHSSPYNSNSSMHQPHRQTDMAIEHSVGRSSYDADTSQQAMQGRRLNYN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0036450 | OsKeNa_02g0036450.02 | Chr02 | 33794747 | 33799844 | + | IsoSeq | ||
| CDS seq | atggcccggtgtacaagggccacctggaccacacgccggtggccatcaaggtgctccgccccgacgccgcccaggggaggtcgcagttcaaccaggaggtggaggtgctcagctgcatccgccaccccaacatggtgctcctcctcggcgcgtgcccggagtacggctgcctcgtctacgagtacatggccaacggcagcctcgacgactgcctgttccggcgcggcggcggcccggtcatcccgtggcagcaccgcttccgcatcgccgccgagatcgccaccggcttgctcttcctccaccagaccaagcccgagccgctcgtccaccgcgacctcaagccgggcaacatcctcctcgaccgcaactacgtcagcaagatcagcgacgtcggcctcgcccgcctcgtcccgccctccgtcgccgacagcgtcacgcagtgcc
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| Protein seq | MARCTRATWTTRRWPSRCSAPTPPRGGRSSTRRWRCSAASATPTWCSSSARARSTAASSTSTWPTAASTTACSGAAAARSSRGSTASASPPRSPPACSSSTRPSPSRSSTATSSRATSSSTATTSARSATSASPASSRPPSPTASRSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 33795850 | 33796900 | + | OsKeNa_02g0036450.02 | OsKeNa_02g0036450.01,OsKeNa_02g0036450.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.704875 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0787200 | RBH | 0.0 | 0.0 | 0.215889 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54590 | RBH | 0.0 | 0.0 | 0.106112 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0787200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036350 | RBH | 0.0 | 0.0 | 0.338786 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0006250 | RBH | 0.024417 | 0.0 | 3.853649 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036290 | RBH | 0.0 | 0.0 | 1.874929 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0035880 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036070 | RBH | 0.0 | 0.0 | 1.846399 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0547100 | RBH | 0.045636 | 0.967103 | 1.127438 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0035890 | RBH | 0.0 | 0.0 | 1.073552 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0577800 | RBH | 0.0989195 | 0.8402555 | 0.3098835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0036150 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036210 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036170 | RBH | 0.0 | 0.0 | 0.164633 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036420 | RBH | 0.0 | 0.0 | 0.581055 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036160 | RBH | 0.0 | 0.0 | 3.337130 |
