Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0597200 | OGI:02066240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:23209707-23210456 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGGTCTACTTTATCCAGCGTTGGAAACCCGCTCCTACACACACACACACCCACTACCGCTCTCCGCAATTCAGCCAGACTGCAGTTGCAGCAACAGCAAGGATGGCTGGTGGAGTCGGGGAGGCGCTCGTGTCCGCCGTGCTGAAGGAGGTGCTGGGAAAGCTTGGCTCCGCCGTCGGGGAACAGATCGTGATGCGATGGAACCTGAAGCAAGATCTGGAGAGCATCAAGAGCACCCTGGGTATGCTTCAAGCGGTGCTCAGGGATGCCGAGAGGCGCTCCGTGAGTGACGAAGGCGCCAGCCTCTGGCTGAAGAGGCTCAAGAACGCGGCCTACGACATCTCCGACATGCTCGATGAATTCGAAGCCAAGTTATCGGAGGTAAAAAAGTGTCCTCCCGCTAGGATGTCGTCCTTCACTTCAGTTTTATGCTTATCTATGCTCCTCCCGTCAAAAAAGATTTGACATTTAGGACAATATTTAGTAGTCTCAGCTAGATTCCCTAAGGCTTTGTTCGGTTTAGAGGGGATTGAAGAGGATTGGAGGGGATTGATGGGGAATAATTCCACACCATAATAGGTGTGGAATAAATCCCCTCCAATCCCTCTCTCATGGGGTTAACCGAATAAGGCCTAACTGGTTTATAGTGCCCAACAAGCAAATAGAGGTTTTGCAGCGTGTTCCAATGGGGCAACTGCTCATTTGCCTTTGTACTGTTACAGTCATGTTCAAGAGCAAGTTTTTCCTTTC
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| CDS seq | ATGGCTGGTGGAGTCGGGGAGGCGCTCGTGTCCGCCGTGCTGAAGGAGGTGCTGGGAAAGCTTGGCTCCGCCGTCGGGGAACAGATCGTGATGCGATGGAACCTGAAGCAAGATCTGGAGAGCATCAAGAGCACCCTGGGTATGCTTCAAGCGGTGCTCAGGGATGCCGAGAGGCGCTCCGTGAGTGACGAAGGCGCCAGCCTCTGGCTGAAGAGGCTCAAGAACGCGGCCTACGACATCTCCGACATGCTCGATGAATTCGAAGCCAAGTTATCGGAGGTAAAAAAGTGTCCTCCCGCTAGGATGTCGTCCTTCACTTCAGTTTTATGCTTATCTATGCTCCTCCCGTCAAAAAAGATTTGA |
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| Protein seq | MAGGVGEALVSAVLKEVLGKLGSAVGEQIVMRWNLKQDLESIKSTLGMLQAVLRDAERRSVSDEGASLWLKRLKNAAYDISDMLDEFEAKLSEVKKCPPARMSSFTSVLCLSMLLPSKKI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0597200 | OsNip_02t0597200-01 | Chr02 | 23209707 | 23210456 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCTGGTGGAGTCGGGGAGGCGCTCGTGTCCGCCGTGCTGAAGGAGGTGCTGGGAAAGCTTGGCTCCGCCGTCGGGGAACAGATCGTGATGCGATGGAACCTGAAGCAAGATCTGGAGAGCATCAAGAGCACCCTGGGTATGCTTCAAGCGGTGCTCAGGGATGCCGAGAGGCGCTCCGTGAGTGACGAAGGCGCCAGCCTCTGGCTGAAGAGGCTCAAGAACGCGGCCTACGACATCTCCGACATGCTCGATGAATTCGAAGCCAAGTTATCGGAGGTAAAAAAGTGTCCTCCCGCTAGGATGTCGTCCTTCACTTCAGTTTTATGCTTATCTATGCTCCTCCCGTCAAAAAAGATTTGA
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| Protein seq | MAGGVGEALVSAVLKEVLGKLGSAVGEQIVMRWNLKQDLESIKSTLGMLQAVLRDAERRSVSDEGASLWLKRLKNAAYDISDMLDEFEAKLSEVKKCPPARMSSFTSVLCLSMLLPSKKI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.420721 | 0.834585 | 3.179854 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g38386 | RBH | 0.944396 | 0.551764 | 0.804610 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0597200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0023580 | RBH | 0.595633 | 2.343004 | 3.208796 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0023680 | SBH | 0.126086 | 0.529495 | 0.695703 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0023650 | RBH | 0.369985 | 1.712337 | 4.517291 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0023360 | SBH | 0.145684 | 0.034106 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0023250 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0379900 | RBH | 6.745487 | 114.4807705 | 11.49562 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0023040 | RBH | 0.427604 | 0.112797 | 1.775090 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0408600 | RBH | 4.4523945 | 45.5463845 | 5.2119105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0023430 | SBH | 0.200741 | 0.098847 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0023280 | RBH | 0.219377 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0023600 | RBH | 4.273460 | 8.259308 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0023320 | RBH | 0.085073 | 0.741355 | 0.718999 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0023140 | RBH | 0.231549 | 5.761666 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G023560 | SBH | 0.275633 | 1.561063 | 1.181025 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0023410 | RBH | 0.541502 | 5.698925 | 1.965192 |
