Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_02g0578201 OGI:02089910 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr02:22229412-22231397
Gene Symbol -
DNA seq

GGAAGTTTAGTGTAATCCAATCCCACTTAAGACAGCAGCCTCAGTCCCAAGTCCCAACTCGTGAATGCTGGCCTGATCATGAATTAAAAAAAAAATTGTCGCTTGCGCGCGATGAGGTGGAGTTATGCTGACTTTTGCTGGCCTTCAGGCTCCATTTTTCTTCATTCAACATTGAGGTGAATAAACAACCCAAAATCTTGGAACCAGTCAACGATCAGCCCGAATTTCGCCGTTGTTGCTTGCCTACCTCTCCACTCCATCATTCGCAAATTTTTTGCAGAACACAGCAAGGAGTAGCAGAGAATGAGCGAGATGCAGCCGCACGCCGTGTGCTTGCCGTTCCCGGCGCAGGGGCACATCACGCCGATGATGAAGCTGGCCAAGATCCTCCACTCCAGGGGCTTCCACGTCACCTTCGTCAGCACCGAGTACAACCACCGCCGCCTCGTCCGCTCCCGCGGCGCCGCCGCCGCGGCCGGAATCCCGGGGTTCCGCTTCGCCACCATCCCGGACGGCCTGCCGCCGTCCGACGCCGACGCCACGCAGGACCCGCCGTCGCTCAGCTACTCCACCATGACCACCTGCCTCCCCCACTTCAGGAAGCTGCTCGCCGACCTCAACAACCGCTTGGCGCCTGACGACGACGACGCCGCGCCGCCGGTCACCTGCGTCGTGGCCGACCACCTCATGGGCTTCAGCCTCGACGCCGCGGCGGAGCTCGGCGTGCCGTGCGCGCTCTTCTGGACGGCCAGCGCCTGCGGCTACATGGGCTACCGCAACTTCCGCCTGCTCATCGACATGGGCATCATTCCCCTCAAAGGTCTGATCATTTCTTGAATTTTTCAATATACGAATCGTGTCGTCGATTCGTCTTCATCAGATTGCTCTGCTTGGCGATCGAGCAGGGGAAGAGCAGCTGACGAACGGGTTCATGGACATGGCGGTGGACTGGGCGCCGGGGATGAGCAAGCACATGCGGCTCAAGGACTTCCCCACCTTCCTCCGCACCACGGACCGCAACGACATCCTGATGACGTTCCAGCTGCGGCAGGTGGAGCGCGCGGAGGAGGCGGACGCCGTGGTCCTCAACACGTTCGACGAGCTGGAGCGGCCGGCGCTGGACGCCATGCGCGCCATCACCCCGGCCATCTACACCGTCGGCCCGCTCGCGTTCCTCACGGAGCAGATCCCGCCGGGCGGGCCCCTCGACGACATCAGCCCCAGCCTCTGGAGGGAAGACGACGCCTGCCTCCGGTGGCTCGACGGGAGGAATCCCCGGTCGGTGGTGTACGTGAACTACGGGAGCGTGACGGTGATGAGCGGCCACGAGCTGGAGGAGTTCGCGTGGGGGCTCGCCGGCAGTGGCCACGACTTCCTCTGGATCGTCAGGCCGGACGTCGTGACGAGGACCGCCGCCGCCACCGCCGCGGAGGCGGCGCTGCCGCGGGAGTTCACGGAGGCGACGAAGGGGAGGGGGCTCGTGGCGAGCTGGTGCGACCAGGAGGCGGTGCTGCGGCACCCGGCGGTGGGGTTGTTCCTGACGCACAGCGGGTGGAACTCGACGGTGGAGGCGCTGTCCGGCGGCGTGCCGATGCTGTGCTGGCCGTTCTTCGCCGAGCAGCAGACCAACTGCCGGTACAAGTGCGTGGAGTGGGGCGTGGCGATGGAGGTGGGGGACAGCGTGCGGCGGGAGGCGGTGGAGGGGAGGATCAGGGAGGCCATGGGAGGAGGGGAGAAGGGGAAGGAGATGAGGAGGAGGGCGGCGGAGTGGAAGGAGGCCGCCGCTCGAGCGAGGGGACGGTCGCTCGCCAACCTTGAGAGGCTCATCGGCGATGTACTGCTCTCTGGTAAAAAGGACAGGGTAATTTGATCATCAAATTCAGTAGAGCGTGTACTTGATTGGTGCAAGTAAAAGTATTATGCGGATGCTAGTGTGCAACTGCAGCATCAGATCCATGTACCACAAATGCGTTGGTGATCCATGGC

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CDS seq

ATGAGCCTCTCAAGGTTGGCGAGCGACCGTCCCCTCGCTCGAGCGGCGGCCTCCTTCCACTCCGCCGCCCTCCTCCTCATCTCCTTCCCCTTCTCCCCTCCTCCCATGGCCTCCCTGATCCTCCCCTCCACCGCCTCCCGCCGCACGCTGTCCCCCACCTCCATCGCCACGCCCCACTCCACGCACTTGTACCGGCAGTTGGTCTGCTGCTCGGCGAAGAACGGCCAGCACAGCATCGGCACGCCGCCGGACAGCGCCTCCACCGTCGAGTTCCACCCGCTGTGCGTCAGGAACAACCCCACCGCCGGGTGCCGCAGCACCGCCTCCTGGTCGCACCAGCTCGCCACGAGCCCCCTCCCCTTCGTCGCCTCCGTGAACTCCCGCGGCAGCGCCGCCTCCGCGGCGGTGGCGGCGGCGGTCCTCGTCACGACGTCCGGCCTGACGATCCAGAGGAAGTCGTGGCCACTGCCGGCGAGCCCCCACGCGAACTCCTCCAGCTCGTGGCCGCTCATCACCGTCACGCTCCCGTAG

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Protein seq

MSLSRLASDRPLARAAASFHSAALLLISFPFSPPPMASLILPSTASRRTLSPTSIATPHSTHLYRQLVCCSAKNGQHSIGTPPDSASTVEFHPLCVRNNPTAGCRSTASWSHQLATSPLPFVASVNSRGSAASAAVAAAVLVTTSGLTIQRKSWPLPASPHANSSSSWPLITVTLP

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_02g0578201 OsNip_02t0578201-01 Chr02 22229412 22231397 - RAP2018-11-26
CDS seq

ATGAGCCTCTCAAGGTTGGCGAGCGACCGTCCCCTCGCTCGAGCGGCGGCCTCCTTCCACTCCGCCGCCCTCCTCCTCATCTCCTTCCCCTTCTCCCCTCCTCCCATGGCCTCCCTGATCCTCCCCTCCACCGCCTCCCGCCGCACGCTGTCCCCCACCTCCATCGCCACGCCCCACTCCACGCACTTGTACCGGCAGTTGGTCTGCTGCTCGGCGAAGAACGGCCAGCACAGCATCGGCACGCCGCCGGACAGCGCCTCCACCGTCGAGTTCCACCCGCTGTGCGTCAGGAACAACCCCACCGCCGGGTGCCGCAGCACCGCCTCCTGGTCGCACCAGCTCGCCACGAGCCCCCTCCCCTTCGTCGCCTCCGTGAACTCCCGCGGCAGCGCCGCCTCCGCGGCGGTGGCGGCGGCGGTCCTCGTCACGACGTCCGGCCTGACGATCCAGAGGAAGTCGTGGCCACTGCCGGCGAGCCCCCACGCGAACTCCTCCAGCTCGTGGCCGCTCATCACCGTCACGCTCCCGTAG

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Protein seq

MSLSRLASDRPLARAAASFHSAALLLISFPFSPPPMASLILPSTASRRTLSPTSIATPHSTHLYRQLVCCSAKNGQHSIGTPPDSASTVEFHPLCVRNNPTAGCRSTASWSHQLATSPLPFVASVNSRGSAASAAVAAAVLVTTSGLTIQRKSWPLPASPHANSSSSWPLITVTLP

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.491322 0.090587 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os02g0578201 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0034210 SBH 0.000000 18.580578 1.484054
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0034290 SBH 0.054689 7.940724 0.389276
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0034180 SBH 0.000000 12.055593 2.363864
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0033760 SBH 0.000000 0.509760 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0033830 RBH 1.336955 15.441492 0.0
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0033650 SBH 0.000000 2.235304 0.139630
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0022450 SBH 0.0 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G034220 RBH 0.000000 5.001235 0.754806
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0022210 SBH 0.0 0.000000 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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