Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0561900 | OGI:02061040 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:21303988-21308677 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACCGCGCCGGCGCGCCCTGGTCGGACAGGCCGAGCAGGACGGTCTCCGGGAGGTTCACGGTGTAGCTCGCCGGCGGCTCCGGCGGGACGGGAGGAAGAAGAGGCGGCGGCGGCACGACGACGGTGAGGCGGCAGAGCGGGCAGGTGGAGTGGGAGCCGAGCCACATGTCGACGCACTCGGCGTGGAAGCCGTGGCCGCACCGGCGGAGGAACCTGGCCTCCTCGCCGTCCTCGAGCTTCGCGAGGCACACCGCGCACTCCACGCCGTCCTCCTTCGCCGCCGCCGCCGCCGCAGCGCGGCTGTACACCGTGACCGGCAGCACCTCCGGGTCGACCCCTCCTCCCCTTCCACCGTCTCCGCCGCTCCCAGAGCGCCGCCGCCGCCCACGCCCGCTTGCCGACGTCGTCAAGGCGCCGCGGCGCCACTCGTCGCAGTAGCAATGGAGCAGGACGATGAGCGTGAGCGCCGCGAAGGTGATGAGCACGCCCGCCACAGCGGCGATGCCGCGGAACGTGATGGCGGTCTGCCCTGCAGGCGCGGACACCGGCGACGGTGACAATGACGACGACGACGACGACGACATGGCGGCGCCGCCCTGCTCGACACCCCGCACCATACTCTCGATCGTCACTCGTCCGGGCACTCGATCGAGCTCGCATAAACTTATATATACACTCAATCGAATGGCACGCAGAGGGGCTTTCCTGGAAGGTTGGAAGGGGATGCTTATACTTGTAAGATGGATTAATACGTGATAAATCATTTCACAATTACATAAGTTTAAGTTTGATTCTTGTGAAATTAATAAAAAATAGTACTCCCTCCATCCCTAAATATTTGATGTCGTTGACTTTTTAAAACATGTTTGACCGTTCGTTTTATTCAAAAACTTTTGTAAATATTATTAAAAAACTTTAGTAGTAGTAGTATATTTAACAATGAATTAAATGATAGGAAAAGAATTAATAATTACTTAAATTTTTTGAATAAGACAAACGATTAAACATATTTAAAAAAAAATCAATGGTGCCAAATATTTAGGGACGGAGGGAGTATGTCTATAAGCACATGTATACTAATTAAAGGTAAATTTGTTGTTTTTATTATAACTTATGGAAATTGAATTTGTGCTTACATGTTTGCGTCTTATAATATACTAGCAAAAATGTCCATGCGTTGCAACGGGTGAAACAATTCTAATGATAATATACGTTTTTCATGCATAACCATATCGATGATAATGTTTGTATGGATTGTTTGTAGATAAGACAATCAGAAAATTGGAACATCTTCAATGTAATGGGCCAACCTCGACGATGGCAAGCTTACCGATGCTGCTTTACCTAAAATAATTGGATTATTTATGTGACACCATGCATATAATTTAAAATACTTTTCCATTGTCATTCTTGCAACCAATAATATGATCAATCAAATCCTACACCGCCTTGCATGGTCAAGTTTACATAAAATAGAGTCATTATGCACTCTTCTCTAAATAACAATTAAAATATTATTTTTAAATATTATTTCCATATAGTATGTTATCAAAAATAGTAGCTATACTTAAAAAATAGTCTGATAATTAAGTCTGATAATGATATACAGAATATGTAGGGTCTTTAATAACGAGAATAGATGACGAAACAAAAGCCGTGGAGATGGAAAAAAAAAAGTCGATGAATCATATCCGACCCAAGCGTCCATCAATTTAGCGTTTTTTTACAGTTTTTTCAGAACGGCTTGTTTTTTTATAAAAGATTTTTTTTGCTTGCGCAATATTTTCAAACCATTTTTTAGAAATAGCGCGTTTTTTCTGATAGTTTTTTCCTCGCAAGTTTTTTTTTTGCTTTTTTACATACAATGAAATCTTTTTTTCTAGCGTGTTTTCTTTTGCTCTTTTTTTCTGACTTCTTTAAGGAGTCCGACCTTTTTTAGATTTTTTATATTTTTTATGGTTTTTTTCTTTTTTCTTTTATAGGAATCGGATTTTTTTATTGTTTTCCCCATTTTAGGGAAAATCAGATCTACGTTTTTTTTCTTTTTCGCCACTTCTTTTCCCCTTTTATAGGAATCATTTTTTTTGTTTTTCGCCGTTTTAGGAGGAATTGGATCTACATCGTGTTTTTTTTCTTTTTCGCCACTTTGGGAATCGAATATTTTTTTCGCTGTTTTTTTTTATTTTGACGGACGATGGAAACACTTTTTATTTTTTAAGTAGTAGAGATAGAGATAGAGATAGAGATATAACGTAGTATCAATCTATTTTATTAAATTTGTTTGAAACTATTTATAATCCACAAGCAATGTCACTGTCAATTTTATAGTTTTTCTCTTGGACCGACTGGGACCAGACCGCGCGCACGGGTAACAATATGTAAACAACGGGTGAGCGTGCACATATGCATGCCTTAGAGCAAGTGCTGTAAAGACTCATGTGTTATTCCCTCCGTCCTATAATATAAATATAAGATATCTTGAGTTTTTGCTTGCAATGTTTGATCATTCGTCTTATTAAAAAAATTGTGTAAATATAAAAAACGAAAAGTTATGCTTAAAATACTTTGGATAATAAAGTAAGTCAACAAAAATTCTAAATTTTTTTTAATAAGACGAGTGGTCAAACAATATAAGCAAAAACTCAAAATCGCTTATATTATGGAACGGAGGGAGTACTACTAAAAGGTGGAGGAGAGAAATAAACAGAAAATATTAAGCACCGTTTTATACTCAACTTTACCTCGATCACGCGATGTCCACCATTTTCTTTACCAAGGATATATAGATAAATAAATATACACGATCCTTATAGAAATATTACTAAGGGTGTGTTTGAGGATAGGGAAAAGAAGATTGAGGAGATGTTCACTACAATTTTATTTTAGCATTGTCAAAATATTTGGTAAGGTTTGAGAAGTACAAATCATGTTTAGTTTCTTACCTTTGCCAGAGTTTAGATTGCTACTTTGCCAAATTTTGGTAAATACTAAAATTTGGTAGGGTTAATTTTGACAGTAAAGTGAATAACCCCTAAGTAGATACATAAAACGAGATAAGCCATTAACGTATAAATAATTAAGTATTAATCTTTTAAATCTTAAGAGATAGATTAATATAATTTTCTAAAACAATCTTTATATAGAAAATGTTTATAAATAACATATCGTTTAGTAGGTTAGGAAGTGTGTGTAGAAAATGTTTATAAATAACATATCGTTTAGTAGGTTAGGAAGTGTGTGTGAAAAATGAGAGAATTTTCCTCTCCTTATATGCTGCTACCCAAGTTGGCCTATATATGATTGCGTTCGGCACAGTTATTTGGCCAGGCTAAACAAATAAACATGTGTCTCATACATATATAAAATTTTATGTATAAAAGATTTTTTTTAATGTTCGGATTGGCCTGGATGTACCAGTTTTGGTCGGTTTAGCACCAAATTAAACCAAACAGAATCCATAACCATAAACTATCCATAAGGTCAGCTGGTCAGCAGTGCCAAAACTGGATTTAGCGTTAGCAAAAGCCGTTGGTTTTGGGGTCACGTAAGAGCAAAAGCATAACCAAGGTCTTCCCTCCGTTTTTAAATATCTATAACTAATATAAATATTCGTTTTTTTTCGGTCGTCACCTCATAGGTGCGGTGTTTTTTTCGTCCCCCTCGCCTCCCCCCAAATCCCAGTCGGAATTGCATTGCCCCCACCCAAAAAAATTCCCAATCGGAATTCAATCAATCTTCACAATGGGAATTCAATGAAACCCCCCGAATCCCAATTGCACTAAGAATCGGATAAGGGAAACACCTTCCAAAATCGGCACAACCAAATCGGATGAACACACCGCAAGAAAAATTAAACCAATCTTTGTCCCCAAAAAAATCATCCCACATACATACATCACAAAACTACACACCCTCGGCCGTCGCCGCTGTCGGCGGATCCATCCGCGGCCGCCACCGACGCTGCCACTGCCGACGGATCCATCGCCGCCGGATCTAGGGTGGGAGGGAGGCGACAGGGGAGGAGGGAGCCACCGCCGGCCCGCAGCCGCCGCCACCGCTGACGGACCCACCTGCCGACGCCGCCGACACCGCCATCGCCGCCGGATCTGGGGCAGGAAGGAGTCGAGAGGTGAGAAGGGAGCCGCCGCCGCCGGATCCACCCGCGGCTACCGCCGCCGCCGCCACCACCGGCGGATCTACCGCGGGAGGGAGGCTAGAGGGGGTGGAGGGAACCGCCGCCGACGCCGCCCCTACCCTCGGATCCGCCGCAACCGCCACCAACCCGCCGCCGCCGACCCGAGAGGGAGAGGAGGAGGGGGGGCGCCGCCGCCGTCGCTTTGAGAGAGGGGATCGGGGGCGCCGCTCGCCGGTCGCTGCTCCGCGCCACCGCAGCCGCTCTGGGGAAGAAGGGGGGGCGGCGGCGCCGCCGTCGTCGCTCGGCGAGGGGGGGAGGGACGGGGGGAGGGGGGAAATGAATCCTAGGGTTTGGGTATTTTTATTTAGGTTAGGATTAATCTGGACTGTCCATTCGATCGGACGGCTCCAGCTGCTCCCACGTCGGGCCGCCGGCCTATTGGGCCACCGAATGGAGGACGCAAAATAGACTTCAATGGAGAAAGAAAACAGGCCAGACACATAGAATAGACAAAAGGGAGGCAATATAAACTTTGCTATATTCGGCCCAAACAT
More
|
||||||||||
| CDS seq | ATGTTTGGGCCGAATATAGCAAAGTTTATATTGCCTCCCTTTTGTCTATTCTATGTGTCTGGCCTGTTTTCTTTCTCCATTGAAGTCTATTTTGCGTCCTCCATTCGGTGGCCCAATAGGCCGGCGGCCCGACGTGGGAGCAGCTGGAGCCGTCCGATCGAATGGACAGTCCAGATTAATCCTAACCTAAATAAAAATACCCAAACCCTAGGATTCATTTCCCCCCTCCCCCCGTCCCTCCCCCCCTCGCCGAGCGACGACGGCGGCGCCGCCGCCCCCCCTTCTTCCCCAGAGCGGCTGCGGTGGCGCGGAGCAGCGACCGGCGAGCGGCGCCCCCGATCCCCTCTCTCAAAGCGACGGCGGCGGCGCCCCCCCTCCTCCTCTCCCTCTCGGGGCGGCGCCGCCATGTCGTCGTCGTCGTCGTCGTCATTGTCACCGTCGCCGGTGTCCGCGCCTGCAGGGCAGACCGCCATCACGTTCCGCGGCATCGCCGCTGTGGCGGGCGTGCTCATCACCTTCGCGGCGCTCACGCTCATCGTCCTGCTCCATTGCTACTGCGACGAGTGGCGCCGCGGCGCCTTGACGACGTCGGCAAGCGGGCGTGGGCGGCGGCGGCGCTCTGGGAGCGGCGGAGACGGTGGAAGGGGAGGAGGGGTCGACCCGGAGGTGCTGCCGGTCACGGTGTACAGCCGCGCTGCGGCGGCGGCGGCGGCGAAGGAGGACGGCGTGGAGTGCGCGGTGTGCCTCGCGAAGCTCGAGGACGGCGAGGAGGCCAGGTTCCTCCGCCGGTGCGGCCACGGCTTCCACGCCGAGTGCGTCGACATGTGGCTCGGCTCCCACTCCACCTGCCCGCTCTGCCGCCTCACCGTCGTCGTGCCGCCGCCGCCTCTTCTTCCTCCCGTCCCGCCGGAGCCGCCGGCGAGCTACACCGTGAACCTCCCGGAGACCGTCCTGCTCGGCCTGTCCGACCAGGGCGCGCCGGCGCGGTGA
More
|
||||||||||
| Protein seq | MFGPNIAKFILPPFCLFYVSGLFSFSIEVYFASSIRWPNRPAARRGSSWSRPIEWTVQINPNLNKNTQTLGFISPLPPSLPPSPSDDGGAAAPPSSPERLRWRGAATGERRPRSPLSKRRRRRPPSSSPSRGGAAMSSSSSSSLSPSPVSAPAGQTAITFRGIAAVAGVLITFAALTLIVLLHCYCDEWRRGALTTSASGRGRRRRSGSGGDGGRGGGVDPEVLPVTVYSRAAAAAAAKEDGVECAVCLAKLEDGEEARFLRRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLLPPVPPEPPASYTVNLPETVLLGLSDQGAPAR |
||||||||||
| Function | E3 ubiquitin-protein ligase EL5 [UniProtKB/Swiss-Prot:Q9LRB7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0561900 | OsNip_02t0561900-00 | Chr02 | 21303988 | 21308677 | - | RAP2018-11-26 | ||
| CDS seq | ATGTTTGGGCCGAATATAGCAAAGTTTATATTGCCTCCCTTTTGTCTATTCTATGTGTCTGGCCTGTTTTCTTTCTCCATTGAAGTCTATTTTGCGTCCTCCATTCGGTGGCCCAATAGGCCGGCGGCCCGACGTGGGAGCAGCTGGAGCCGTCCGATCGAATGGACAGTCCAGATTAATCCTAACCTAAATAAAAATACCCAAACCCTAGGATTCATTTCCCCCCTCCCCCCGTCCCTCCCCCCCTCGCCGAGCGACGACGGCGGCGCCGCCGCCCCCCCTTCTTCCCCAGAGCGGCTGCGGTGGCGCGGAGCAGCGACCGGCGAGCGGCGCCCCCGATCCCCTCTCTCAAAGCGACGGCGGCGGCGCCCCCCCTCCTCCTCTCCCTCTCGGGGCGGCGCCGCCATGTCGTCGTCGTCGTCGTCGTCATTGTCACCGTCGCCGGTGTCCGCGCCTGCAGGGCAGACCGCCATCACGTTCCGCGGCATCGCCGCTGTGGCGGGCGTGCTCATCACCTTCGCGGCGCTCACGCTCATCGTCCTGCTCCATTGCTACTGCGACGAGTGGCGCCGCGGCGCCTTGACGACGTCGGCAAGCGGGCGTGGGCGGCGGCGGCGCTCTGGGAGCGGCGGAGACGGTGGAAGGGGAGGAGGGGTCGACCCGGAGGTGCTGCCGGTCACGGTGTACAGCCGCGCTGCGGCGGCGGCGGCGGCGAAGGAGGACGGCGTGGAGTGCGCGGTGTGCCTCGCGAAGCTCGAGGACGGCGAGGAGGCCAGGTTCCTCCGCCGGTGCGGCCACGGCTTCCACGCCGAGTGCGTCGACATGTGGCTCGGCTCCCACTCCACCTGCCCGCTCTGCCGCCTCACCGTCGTCGTGCCGCCGCCGCCTCTTCTTCCTCCCGTCCCGCCGGAGCCGCCGGCGAGCTACACCGTGAACCTCCCGGAGACCGTCCTGCTCGGCCTGTCCGACCAGGGCGCGCCGGCGCGGTGA
More
|
|||||||
| Protein seq | MFGPNIAKFILPPFCLFYVSGLFSFSIEVYFASSIRWPNRPAARRGSSWSRPIEWTVQINPNLNKNTQTLGFISPLPPSLPPSPSDDGGAAAPPSSPERLRWRGAATGERRPRSPLSKRRRRRPPSSSPSRGGAAMSSSSSSSLSPSPVSAPAGQTAITFRGIAAVAGVLITFAALTLIVLLHCYCDEWRRGALTTSASGRGRRRRSGSGGDGGRGGGVDPEVLPVTVYSRAAAAAAAKEDGVECAVCLAKLEDGEEARFLRRCGHGFHAECVDMWLGSHSTCPLCRLTVVVPPPPLLPPVPPEPPASYTVNLPETVLLGLSDQGAPAR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0450400 | SBH | 0.0 | 0.324321 | 0.386475 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g35440 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0561900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021390 | SBH | 0.0 | 0.0 | 0.201336 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021490 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021490 | SBH | 0.033371 | 0.0 | 0.297297 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0010450 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0010580 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0449900 | SBH | 1.2192925 | 6.0871815 | 9.3304095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0010340 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0477600 | SBH | 1.2339095 | 3.0242745 | 19.2905455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021330 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0010490 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0010890 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0010850 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0010510 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G010750 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0010550 | SBH | 0.0 | 0.0 | 0.0 |
