Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0450400 | OGI:04068600 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:22442143-22443686 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGATCTCAAGCACTTCTCTTTACTGCATTTGGGGTCTCAAACTCGTAATCCTCACTTTTTAGGATTCCAAGTATAATATTTACACACTAATCGATCCCTTATCAAGAACATGGTGTAACCTTATTCGCAGGGAGCAAAATTCAGCAAAGGGATCTCATCACAGCGGGAGCACCGAGCTCCGGGCACGGCAATGCCGCGAGAAGAACGACCTCGGGAGCCTCTCGGCGGCGCCGAGGTTGCTCAGGCGGCCGGAGCTCGAGACCTTCAGGCAAGACGCGCCAGGAGCCCCGCCGCGCTTGTCGCCGCCGCCGCCGCCGCCGCTCTGCTCCTCTTCAGGAGCCGCCTCCGGCAGCCGCTCTAGCGCCGCGACCTCTGCGGCGGTCGACACGATCGCCGCGTCCATGGAAGCCGCGCGCCGCACGTTGCGCGGCGGCGGCAATGGATCCGGTGAGCTGGATTGCTCTTGCCGGTTTTCCTCCATGTGCGGCGGCGCTCCTTGGTCCTCCTGTTCTGCTTCCTCTTCTTCTTCTTGGCGTTCCAAGATTGCATCGCCCGGCGCAGCCGCTTGCTGGGCTGCGGCTATGGTGTTTGCGACTGGATCAGCTTGTGGCATGGAGCCGGTGTCGCCGCCACCGGACTCCGTGGCCGTGGCGGCGGGGCCTAGCACGTCGGAGCGGCAGAGCGGGCAGTTGACGTGGGCGCGGAGCCACGTGTCGATGCAGGGGACGTGGAACGCGTGGCCGCACTTGGGGAGAAGGCGCACCAGCTCGCCGTCCTGGAACTCGCCGAGGCAGACGGAGCAGTCGGCGGCGCCGAGGAGCCCAGCGCCCGCGCGGTACCGCGTCGCGGCGATCGAATCGATCGCCGCCTCGTCGAGCCCGACGGTCCGGATGTACCAGATGTGGTGCACCACTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTCCGCATCGTCATCCCCGCCGTCCTCGACGTTCACCGCCACCGCGTCGGCCGGCGCCGCGGGGGCGAGGAGCGCCTGCTGCCTCTGCCGCCGCCGCCGCAGCCTCCGCCGCCGGACGGCGACGATCACGACGAGGAGGATCATGGAGAGGAACGCGAGCGCCGCGGCGCCGACGACGATAAGGTTGATGATGCGTCGGCGGTGCTCGTCCGCATCACCGCCACCGCCTGGTGGGGAGCCGTGGTATCCTCCCTGATCCCTCCTGCCCCCCGCGGCGCCATGGAGAGGAGACGGCGACGGGGCAGGAAAAGCGGGCGGGCAAGCCCAGGGCGCCGGCGAAGGGGAAGCGAAGGGAGTAAGGATGACGCTCGGAGGAGGAGGGGACAGCGGCCACGAGGAGCAGCCGTAGCCGCCGTCGTCGCAGTCGTTGGAGTGCAGCGCCCGGCGGTGGTGGAGCGGCATCGCGCTTGCCGTCAGGAGGTGGGCGACGACCTGCGACGACTCGCCGGCGGCATCGGCGCGGCGCGCGGGCGTGGTGCGGAGGAAGGTGGGAGGAAGGTCGCTCGCGGGATCGAACGCGTGCCGAGTCTTCTTCACGCGA
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| CDS seq | CGCGTGAAGAAGACTCGGCACGCGTTCGATCCCGCGAGCGACCTTCCTCCCACCTTCCTCCGCACCACGCCCGCGCGCCGCGCCGATGCCGCCGGCGAGTCGTCGCAGGTCGTCGCCCACCTCCTGACGGCAAGCGCGATGCCGCTCCACCACCGCCGGGCGCTGCACTCCAACGACTGCGACGACGGCGGCTACGGCTGCTCCTCGTGGCCGCTGTCCCCTCCTCCTCCGAGCGTCATCCTTACTCCCTTCGCTTCCCCTTCGCCGGCGCCCTGGGCTTGCCCGCCCGCTTTTCCTGCCCCGTCGCCGTCTCCTCTCCATGGCGCCGCGGGGGGCAGGAGGGATCAGGGAGGATACCACGGCTCCCCACCAGGCGGTGGCGGTGATGCGGACGAGCACCGCCGACGCATCATCAACCTTATCGTCGTCGGCGCCGCGGCGCTCGCGTTCCTCTCCATGATCCTCCTCGTCGTGATCGTCGCCGTCCGGCGGCGGAGGCTGCGGCGGCGGCGGCAGAGGCAGCAGGCGCTCCTCGCCCCCGCGGCGCCGGCCGACGCGGTGGCGGTGAACGTCGAGGACGGCGGGGATGACGATGCGGAGGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGTGGTGCACCACATCTGGTACATCCGGACCGTCGGGCTCGACGAGGCGGCGATCGATTCGATCGCCGCGACGCGGTACCGCGCGGGCGCTGGGCTCCTCGGCGCCGCCGACTGCTCCGTCTGCCTCGGCGAGTTCCAGGACGGCGAGCTGGTGCGCCTTCTCCCCAAGTGCGGCCACGCGTTCCACGTCCCCTGCATCGACACGTGGCTCCGCGCCCACGTCAACTGCCCGCTCTGCCGCTCCGACGTGCTAGGCCCCGCCGCCACGGCCACGGAGTCCGGTGGCGGCGACACCGGCTCCATGCCACAAGCTGATCCAGTCGCAAACACCATAGCCGCAGCCCAGCAAGCGGCTGCGCCGGGCGATGCAATCTTGGAACGCCAAGAAGAAGAAGAGGAAGCAGAACAGGAGGACCAAGGAGCGCCGCCGCACATGGAGGAAAACCGGCAAGAGCAATCCAGCTCACCGGATCCATTGCCGCCGCCGCGCAACGTGCGGCGCGCGGCTTCCATGGACGCGGCGATCGTGTCGACCGCCGCAGAGGTCGCGGCGCTAGAGCGGCTGCCGGAGGCGGCTCCTGAAGAGGAGCAGAGCGGCGGCGGCGGCGGCGGCGACAAGCGCGGCGGGGCTCCTGGCGCGTCTTGCCTGAAGGTCTCGAGCTCCGGCCGCCTGAGCAACCTCGGCGCCGCCGAGAGGCTCCCGAGGTCGTTCTTCTCGCGGCATTGCCGTGCCCGGAGCTCGGTGCTCCCGCTGTGA
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| Protein seq | RVKKTRHAFDPASDLPPTFLRTTPARRADAAGESSQVVAHLLTASAMPLHHRRALHSNDCDDGGYGCSSWPLSPPPPSVILTPFASPSPAPWACPPAFPAPSPSPLHGAAGGRRDQGGYHGSPPGGGGDADEHRRRIINLIVVGAAALAFLSMILLVVIVAVRRRRLRRRRQRQQALLAPAAPADAVAVNVEDGGDDDAEGGGGGGGGGGVVHHIWYIRTVGLDEAAIDSIAATRYRAGAGLLGAADCSVCLGEFQDGELVRLLPKCGHAFHVPCIDTWLRAHVNCPLCRSDVLGPAATATESGGGDTGSMPQADPVANTIAAAQQAAAPGDAILERQEEEEEAEQEDQGAPPHMEENRQEQSSSPDPLPPPRNVRRAASMDAAIVSTAAEVAALERLPEAAPEEEQSGGGGGGDKRGGAPGASCLKVSSSGRLSNLGAAERLPRSFFSRHCRARSSVLPL |
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| Function | RING-H2 finger protein ATL52 [UniProtKB/Swiss-Prot:Q9LF64] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0450400 | OsNip_04t0450400-01 | Chr04 | 22442143 | 22443686 | - | RAP2018-11-26 | ||
| CDS seq | CGCGTGAAGAAGACTCGGCACGCGTTCGATCCCGCGAGCGACCTTCCTCCCACCTTCCTCCGCACCACGCCCGCGCGCCGCGCCGATGCCGCCGGCGAGTCGTCGCAGGTCGTCGCCCACCTCCTGACGGCAAGCGCGATGCCGCTCCACCACCGCCGGGCGCTGCACTCCAACGACTGCGACGACGGCGGCTACGGCTGCTCCTCGTGGCCGCTGTCCCCTCCTCCTCCGAGCGTCATCCTTACTCCCTTCGCTTCCCCTTCGCCGGCGCCCTGGGCTTGCCCGCCCGCTTTTCCTGCCCCGTCGCCGTCTCCTCTCCATGGCGCCGCGGGGGGCAGGAGGGATCAGGGAGGATACCACGGCTCCCCACCAGGCGGTGGCGGTGATGCGGACGAGCACCGCCGACGCATCATCAACCTTATCGTCGTCGGCGCCGCGGCGCTCGCGTTCCTCTCCATGATCCTCCTCGTCGTGATCGTCGCCGTCCGGCGGCGGAGGCTGCGGCGGCGGCGGCAGAGGCAGCAGGCGCTCCTCGCCCCCGCGGCGCCGGCCGACGCGGTGGCGGTGAACGTCGAGGACGGCGGGGATGACGATGCGGAGGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGTGGTGCACCACATCTGGTACATCCGGACCGTCGGGCTCGACGAGGCGGCGATCGATTCGATCGCCGCGACGCGGTACCGCGCGGGCGCTGGGCTCCTCGGCGCCGCCGACTGCTCCGTCTGCCTCGGCGAGTTCCAGGACGGCGAGCTGGTGCGCCTTCTCCCCAAGTGCGGCCACGCGTTCCACGTCCCCTGCATCGACACGTGGCTCCGCGCCCACGTCAACTGCCCGCTCTGCCGCTCCGACGTGCTAGGCCCCGCCGCCACGGCCACGGAGTCCGGTGGCGGCGACACCGGCTCCATGCCACAAGCTGATCCAGTCGCAAACACCATAGCCGCAGCCCAGCAAGCGGCTGCGCCGGGCGATGCAATCTTGGAACGCCAAGAAGAAGAAGAGGAAGCAGAACAGGAGGACCAAGGAGCGCCGCCGCACATGGAGGAAAACCGGCAAGAGCAATCCAGCTCACCGGATCCATTGCCGCCGCCGCGCAACGTGCGGCGCGCGGCTTCCATGGACGCGGCGATCGTGTCGACCGCCGCAGAGGTCGCGGCGCTAGAGCGGCTGCCGGAGGCGGCTCCTGAAGAGGAGCAGAGCGGCGGCGGCGGCGGCGGCGACAAGCGCGGCGGGGCTCCTGGCGCGTCTTGCCTGAAGGTCTCGAGCTCCGGCCGCCTGAGCAACCTCGGCGCCGCCGAGAGGCTCCCGAGGTCGTTCTTCTCGCGGCATTGCCGTGCCCGGAGCTCGGTGCTCCCGCTGTGA
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| Protein seq | RVKKTRHAFDPASDLPPTFLRTTPARRADAAGESSQVVAHLLTASAMPLHHRRALHSNDCDDGGYGCSSWPLSPPPPSVILTPFASPSPAPWACPPAFPAPSPSPLHGAAGGRRDQGGYHGSPPGGGGDADEHRRRIINLIVVGAAALAFLSMILLVVIVAVRRRRLRRRRQRQQALLAPAAPADAVAVNVEDGGDDDAEGGGGGGGGGGVVHHIWYIRTVGLDEAAIDSIAATRYRAGAGLLGAADCSVCLGEFQDGELVRLLPKCGHAFHVPCIDTWLRAHVNCPLCRSDVLGPAATATESGGGDTGSMPQADPVANTIAAAQQAAAPGDAILERQEEEEEAEQEDQGAPPHMEENRQEQSSSPDPLPPPRNVRRAASMDAAIVSTAAEVAALERLPEAAPEEEQSGGGGGGDKRGGAPGASCLKVSSSGRLSNLGAAERLPRSFFSRHCRARSSVLPL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.324321 | 0.386475 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0557300 | RBH | 1.137354 | 0.606657 | 5.431591 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g37740 | RBH | 0.0 | 0.192017 | 0.087575 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0450400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0015140 | RBH | 0.312372 | 6.663363 | 1.087212 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016020 | RBH | 0.0 | 3.070555 | 0.787190 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015740 | RBH | 0.240654 | 3.349464 | 0.378341 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0015320 | RBH | 0.0 | 0.084155 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015630 | RBH | 0.596211 | 3.939857 | 1.938440 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0350500 | RBH | 0.7454445 | 11.6441535 | 1.5920905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014490 | RBH | 0.108564 | 0.540223 | 0.140385 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0347300 | RBH | 1.35153 | 13.2507605 | 0.4714525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014830 | RBH | 0.0 | 3.429749 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014870 | RBH | 0.0 | 7.216285 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0015470 | RBH | 0.0 | 0.631554 | 0.357749 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015610 | RBH | 0.0 | 1.467375 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014720 | RBH | 0.0 | 0.509118 | 0.603966 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014780 | RBH | 0.0 | 11.306328 | 2.231588 |
