Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0449900 | OGI:02078210 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr02:29099451-29100317 | ||||||||
| Gene Symbol | OsRING-1, OsATL38 | ||||||||||
| DNA seq | CTCCTCCTCTCCCGCCTCGCCCCGGCAGCCTCGTGGAAGGAGCAGCCATCGGCGCGGGGCCAGTCGGCGTCCTCGGCGAGGTGGCGCCGCAGCTCCTCCTTCCTCTCCCGACGCTTTTCCCCGGCGGCAGCAACCGGAGAGTAGGTCCCAGCGGTGGTGGTGGCGGCGGCGAGCGCGGCCGCGTCGGCCTTCCTTCGCGGAGCCACTTTCAGTGGAGCGATTTGGGGAAGGGTTGGAGACATGAGTGGCTAGGAGTAGCCGGCAAGCACCACCACTCCGTGCCGGCCCTACTCCCCCGTCGGCATCGCCGTGATGCTCAGCAGCGGCGTCGCCCTCGATGCGGCCGTCACCTGCCACGAAAAGTACGGGCACGTCTGGGAGGTGAGCGCGGCCATGGCGGGCGGGCCCGTACGTCGTCGTCGCGCATCACGGCGGCGTCGGCGGGACGGGAGAAAGAAGAGGCGGCGACGACACGATGACGGTGAGGCGGCAGCGCGGGCAGGTGGAGTGGGAACCGAGCCACATGTCGACGCACTCGGCGTGGAAGCCGTGGCCGCACCGGGGGAGGAACCTGGCCTCGTCGCCCTCCTCGAGCTCCGCGAGGCACACCGCGCACTCGATGCTGTCGTCCTCCTCCTTCACCGCCGCCGCCGCCGCCGCCGCCATGCTGTGGCTGTACACCGTGACCAGCAGCGACCGCAGCACCTCCGGGTCGACCCCTCCTCCCCTTCCACCTTCCCCGCTGCTCCCAGAGCGTCGCCGCTGCGGCCGCCCCCGCCGCCCATGCCCGCTGGAGAAAAGTGAAGAGAGAGAAAGAGGAGAAAGGGAGAGGAAGGGAAAGAGAGAGAGGGAGTGACGACGTGGCAT
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| CDS seq | ATGCCACGTCGTCACTCCCTCTCTCTCTTTCCCTTCCTCTCCCTTTCTCCTCTTTCTCTCTCTTCACTTTTCTCCAGCGGGCATGGGCGGCGGGGGCGGCCGCAGCGGCGACGCTCTGGGAGCAGCGGGGAAGGTGGAAGGGGAGGAGGGGTCGACCCGGAGGTGCTGCGGTCGCTGCTGGTCACGGTGTACAGCCACAGCATGGCGGCGGCGGCGGCGGCGGCGGTGAAGGAGGAGGACGACAGCATCGAGTGCGCGGTGTGCCTCGCGGAGCTCGAGGAGGGCGACGAGGCCAGGTTCCTCCCCCGGTGCGGCCACGGCTTCCACGCCGAGTGCGTCGACATGTGGCTCGGTTCCCACTCCACCTGCCCGCGCTGCCGCCTCACCGTCATCGTGTCGTCGCCGCCTCTTCTTTCTCCCGTCCCGCCGACGCCGCCGTGA
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| Protein seq | MPRRHSLSLFPFLSLSPLSLSSLFSSGHGRRGRPQRRRSGSSGEGGRGGGVDPEVLRSLLVTVYSHSMAAAAAAAVKEEDDSIECAVCLAELEEGDEARFLPRCGHGFHAECVDMWLGSHSTCPRCRLTVIVSSPPLLSPVPPTPP |
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| Function | E3 ubiquitin-protein ligase EL5 [UniProtKB/Swiss-Prot:Q9LRB7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0449900 | OsMH63_02T0449900.1 | Chr02 | 29099451 | 29100317 | - | maker | ||
| CDS seq | ATGCCACGTCGTCACTCCCTCTCTCTCTTTCCCTTCCTCTCCCTTTCTCCTCTTTCTCTCTCTTCACTTTTCTCCAGCGGGCATGGGCGGCGGGGGCGGCCGCAGCGGCGACGCTCTGGGAGCAGCGGGGAAGGTGGAAGGGGAGGAGGGGTCGACCCGGAGGTGCTGCGGTCGCTGCTGGTCACGGTGTACAGCCACAGCATGGCGGCGGCGGCGGCGGCGGCGGTGAAGGAGGAGGACGACAGCATCGAGTGCGCGGTGTGCCTCGCGGAGCTCGAGGAGGGCGACGAGGCCAGGTTCCTCCCCCGGTGCGGCCACGGCTTCCACGCCGAGTGCGTCGACATGTGGCTCGGTTCCCACTCCACCTGCCCGCGCTGCCGCCTCACCGTCATCGTGTCGTCGCCGCCTCTTCTTTCTCCCGTCCCGCCGACGCCGCCGTGA
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| Protein seq | MPRRHSLSLFPFLSLSPLSLSSLFSSGHGRRGRPQRRRSGSSGEGGRGGGVDPEVLRSLLVTVYSHSMAAAAAAAVKEEDDSIECAVCLAELEEGDEARFLPRCGHGFHAECVDMWLGSHSTCPRCRLTVIVSSPPLLSPVPPTPP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.2192925 | 6.0871815 | 9.3304095 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0561800 | SBH | 0.377574 | 0.416699 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45590 | RBH | 0.060164 | 0.149703 | 0.064813 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0560600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021390 | SBH | 0.0 | 0.0 | 0.201336 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021490 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021490 | RBH | 0.033371 | 0.0 | 0.297297 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0021210 | SBH | 0.0 | 0.038049 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0021140 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020870 | SBH | 0.0 | 0.0 | 0.050181 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0477600 | RBH | 1.2339095 | 3.0242745 | 19.2905455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021330 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0021070 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021530 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0021220 | SBH | 0.148052 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0021060 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021490 | SBH | 0.123940 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0021270 | SBH | 0.0 | 0.0 | 0.620485 |
