Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0211200 | OGI:02001240 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:6212061-6212890 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTTGGATCAGAGATTTGAGACTTGAAGCAGAGCAGGGCTTCTCTATCAGTATCAGTGTCATCGCTGATTGCTAATGGCAGAGAGCATGAGATGATGAAAACAGCCAAGAGTGGAATGAATTTTGGGCATGGAGCAAACAAGCGGATCATCTTGCTGTTCGTGCTGTGGCTTTCTCTTGCTTATGGCATTTTAAGTGCAGGCAGGCACACACTTGTCTTATATTCGTATATTCCAATGATTGTGCCTACTTCTTTTTGCCCAAATGAAAACTGTTTTCTAACTCTGGGAAGGAAGGTATGAATCAGCTGCTGCATTGTTTCTTAGTCAGAACTTTGAGTTGACTTCATTTTCTCAGGTCAATCACATATTATGTGCTTGGTTACTTTATACTGTCGAATATTGGTGGAGATGCCTAATGTGATGTCCTCCATCCATTATTGACTGAAGGATTACATTATATATAATTATATATGATTTTAGATGGGATAGTGGTGCCTAACTTCTATTTCAAAGATATCCAACTGTGAATATCTGATGTGTGTGATCATTTAGCATTGTGTTCACATATGATGGTGCCAGTTGAGTTTGGTGGTGAAAATTGACTGCAAAATTTGCATGCTGATAAATGAGTTGGACGGGTAGATGCACAACACTAAAATAATATCTACCATTGTTGACTAGAATCCTCTTCTACATGCTTCTTTCTCACGTAACTGACTTTTCGCATGCTATCCAATATCCAGTCCACAAGGCGTATTGGTTCCATGTAATTTCTGAATATGCCCATGTAGTGATCGACCTATGTGCTATTTGGCTTTATTTTGTTTAC
More
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| CDS seq | ATGATCCGCTTGTTTGCTCCATGCCCAAAATTCATTCCACTCTTGGCTGTTTTCATCATCTCATGCTCTCTGCCATTAGCAATCAGCGATGACACTGATACTGATAGAGAAGCCCTGCTCTGCTTCAAGTCTCAAATCTCTGATCCAAAC |
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| Protein seq | MIRLFAPCPKFIPLLAVFIISCSLPLAISDDTDTDREALLCFKSQISDPN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0211200 | OsNip_02t0211200-01 | Chr02 | 6212061 | 6212890 | - | RAP2018-11-26 | ||
| CDS seq | ATGATCCGCTTGTTTGCTCCATGCCCAAAATTCATTCCACTCTTGGCTGTTTTCATCATCTCATGCTCTCTGCCATTAGCAATCAGCGATGACACTGATACTGATAGAGAAGCCCTGCTCTGCTTCAAGTCTCAAATCTCTGATCCAAAC |
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| Protein seq | MIRLFAPCPKFIPLLAVFIISCSLPLAISDDTDTDREALLCFKSQISDPN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.143178 | 1.308513 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0211900 | RBH | 0.359565 | 0.246918 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g12010 | RBH | 0.431697 | 0.447869 | 0.085745 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0211200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0008530 | SBH | 0.000000 | 0.0 | 0.584907 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0008630 | RBH | 0.0 | 0.0 | 0.188894 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0008430 | RBH | 0.369193 | 0.439994 | 0.324075 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0008300 | SBH | 0.020999 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0008340 | SBH | 0.000000 | 7.684546 | 2.421861 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0007000 | RBH | 0.0946105 | 0.2399255 | 0.2444645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0008260 | SBH | 0.049859 | 0.221784 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0107400 | SBH | 0.435921 | 6.0399335 | 2.2805995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008750 | SBH | 0.030803 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0008320 | SBH | 0.107421 | 2.633415 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008580 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0008600 | SBH | 0.191014 | 0.322503 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008350 | SBH | 0.0 | 1.303229 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G008560 | SBH | 0.0 | 0.748206 | 0.150921 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0008450 | SBH | 0.209915 | 7.908681 | 1.141916 |
