Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNip_01g0339600 | OGI:01039450 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:13344958-13348414 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATGTACGTCTCTACACACGTCATCACCATAGAAGAAGAAGAGGAGGAGGACGGTGATTGATGAAGGGTGAAAGAGAGAGGTAGAGAGGCGGCGGCGAAGCGGGCATACCATGGAGGAGGGCAGGGTGGAATTCGAGGATCCTGATATGCTCGAAGACGTTGTTGAGGGCGCCGGGGAGCTGGCTGCGGACGAGCTTGCACCTGAGGATGGCGAAGAGCTCCAGGTCCTTGGGGACGAAGTAGCAGCCGACAGGCATGCCGTGCCGGTTCTTGCCGTACTCGGGCACCACCTTCTCCTTCCCCTTCCACTTCCCATTGTTGTTGCCATCGCCGCCGCCGCCGCCGCCTCCTCCTAGTGGTTGTTCTGCCATGGCGGGCGAGTTAGTTGGTCAGAGTTGTAGTTAACCAGGAGAAGGAGAGAGGATTAATTAGTCAGCGAGATAGAGAGAGCTAGCCGAGCCGTGATCAGTCGCGGCGGCGGCGCTCGCGCGTGGCGTGGCGTGGCGAGGGCTGCATATTTGAGGGGAGGGCGTGAGGCGGCTGTTTGATTCGAATTCAATTTGGGGGGGAAATTGAAGGGGAGTAAGAGTAGGAATACGGTGCAAATATGATGTAAGAGACCGGCTGCTATTTCCAATTTTGGTATGCAACATGACAGCCAGCCGGAGACGACGACGGCGGCGGCGAAGGACGGAGAGCTCGCCGTCTGATTGAGCCGGTATGACCTTCTTCCTGATTTTCTCGCAGAGCTCCCCTGATTCGACCACCTGCTCAGTCCCCTCCCTCTAGCGACGGATTTCGCCGCCGTGAACTCGCCGACAGCTTCCCCTCCTCGGCCGCCGCCGCGCAGGAGGGGGATTGGTCGAGTGTGCCACCAGCCTCACGGCTCCCGACGGCCATAGCCCCCCTTCTCTCTTCCCACTTACTTTGCCCCCCCTAAATTTCTCTTGATTTGGGAATTCCGCCGGGATTCCTCGAAGCAGACGCTGTGATTTAGGGATTTAGAAGCTGCGTGGCTGTTCTGTAACTTCTGTTTAGTGAAGAGAAGTTTATTTGGGTTCTCTTATGTGTTGGTGTGTCGATGACCTTCTTTGCGGTCTCTCTGATTACTTGCAGTGGTGCTTGTTTCACAGATGGAGATGGGGATGAATTCTGTGCAGCCAAATGCTCAGTTTCATGTGCCGCACAAGTCCCTCTCGTTGGATATATGTAAGAGCCTTTGCTCTAGTAACTTTTAAGCATATATGATGAGTGCATTGCATATGATTGCGATAAAAACACCTTCAAGAAAACAGTCTGATAAACTGTTCCTGGATTAGAACTCAATTCAACATGTCATCGCATATCGTTAGCCATTGCCCGTAAGAACAAGTTTGTTCTGTCGTTGGATCAGAACATGATCTGCATTGGCTATCATTGCTTTGTCGATTGTTATCACTTTGGCAAATTGTCACTGTCTAGTCCTTGCAAGAACCACATCTGCATTGTTTGGTGTTAGTTATTTCAGTTCTTTGCGTGCAGCTAACTTATTTTCCTTCTTGGTTTTCTAGGGCAATAAGACAGATATTGTTATCAGCAAGTATGAGGGTAGCTTTATGGTTAGTTACACCTTGCAAGTGTTATTTATTCGATTGGATGACAAGTTTTCACATATAAAATATGCTCACCTAATCATAAAATCTACAGGTGATGGTGACACAAATAGGATGCATGGGAACCATATTAGCTGCCAGGTATGTTTTTTATTCTCCCATATAACATGGTTTATTTTGGGCATTGCTAGTTCAGGATAGACAATTCTTTCCATGCTTTTAGTACTATCGAAATTTGAAACCTTTAGCTCTCAGCTTTTTGCTGATGTTTCTGAAAGAACAGTGAGAATCCATCCACAATTCCGCATACATATGTTGGTGCGTTTATCCCCTAGTTGCAAAAAGGCTAGGAAACTGTTGAGCATAGATTTCGGAGTGCATGTCAGGTCATAACTCATAACCTCATGATGCTACAGTTTATACAGGATAATGCTTCTGTTATTTCTTAAACACGATAGATGATAGTTGACAGCTAGTACTTTATTGATGATGTACCATTGTAGTTGTTATTATGTGCTGTATTTCCTGTCACTTTAGTATTTCTGATCATGCTTTCTTGCTCATTAATAGGAAAGATGAAAGTGTTTTTTCTGATCCAACCTACAATGTTCTTTTTGGAAAGAGGGATGAGGTAAGGTTATTATACTGTTCAATGTAGGGTCTGACCATAGATAGATCTAATGAATGTGCATATTGTTGTGATCACAGCCGTTACTACTAGCTTGTGCACGCCAACTTATCGAACACATAAGGTAAGATTCCCTCCCACCCCACCCCATATATCCGAAGAACTTCTTGTATGATATATGCTTGCTTCTCATGCAACTAAAAATTAAACTTCATGCCAATTTCGTGGATAAGAAATATAATTGAAACTGTGTCTGCATCTGCCTATGATTCCATTAAATTTTGAATGTAATTTTCACCAATAAGCTCCACTTCTTCTAAGCTGCTCTTGGCTGAGTTCGTTTGCATGAGTTCCCAACTCACTCTGACCGTTTTTCGCGCGCACGCTTTTCAAACTACTAAATGGTGTATTTTTTGCAAAAAATATTCTATACGAAAGTTGCTTTAAAAATCATATTGATCCATCTTTCAAAAAAGAATTAGCTAATATTTAACTAATCATGCTCTAATGAATCGCTCCGTTTTTTGTGCGGGAGGGATTTGCTCCCAACAAGAAGTAACAAACACATCCTTAGATGCAAATGTCTCCAGCAATGGCCCTTTTAATTGTGGTCAATGATTTTTTTATCTCACGCAACTATTGTGACACTTCGGTTGCTGAAGTTAGTTACATAATTTGTCCAGCTCTGATTTGTAAACTGTCCTTTGGCACCTGTACCACACTCCATTTTCTTACAGACACGGTCATTGATGATATCTCTTGGTCTGAAGGATCATTCCCAGGTATTATTTGAACTTCCCTTCATATGACTGTAATTCTCCGTGTTTTTCTCCTGAATCTTGCCAAATCAGCGAGCATGGTCGACTGTACTGTGCATATCAGTGTTTCTGAGGTTAGACCCCATTATTTTGCATTGGAATCAATAGTATTCTCGTGCATGTATCTCAAACAATTTTGTTACTTCTGCAGGCAACAATGAAATATATTGTTTCCACCATAATTGAGAACCGCCTATAGTAATAGTTTTGCATATCGAGCTGGGGTTGGAATGGCTGGGCACATATCTATTCACTTCATCAACAGAGATGTTGACATGATTAGTGCTGAGCAATTAACACTCTCTTACCAATCTAGAATTTTGTAACTATGATTTCTTCGGAGTCGATGTATCACAAAGTAGTTATATAACCAAAGTTATAGCGAGAATTGCACTACTAGCTTTGATGAGTATTTCATCT
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CDS seq | ATGCTCAGTTTCATGTGCCGCACAAGTCCCTCTCGTTGGATATATGGCAATAAGACAGATATTGTTATCAGCAAGTATGAGGGTAGCTTTATGGTGATGGTGACACAAATAGGATGCATGGGAACCATATTAGCTGCCAGGAAAGATGAAAGTGTTTTTTCTGATCCAACCTACAATGTTCTTTTTGGAAAGAGGGATGAGCCGTTACTACTAGCTTGTGCACGCCAACTTATCGAACACATAAGGTAA |
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Protein seq | MLSFMCRTSPSRWIYGNKTDIVISKYEGSFMVMVTQIGCMGTILAARKDESVFSDPTYNVLFGKRDEPLLLACARQLIEHIR |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNip_01g0339600 | OsNip_01t0339600-01 | Chr01 | 13344958 | 13348414 | + | RAP2018-11-26 | ||
CDS seq | ATGCTCAGTTTCATGTGCCGCACAAGTCCCTCTCGTTGGATATATGGCAATAAGACAGATATTGTTATCAGCAAGTATGAGGGTAGCTTTATGGTGATGGTGACACAAATAGGATGCATGGGAACCATATTAGCTGCCAGGAAAGATGAAAGTGTTTTTTCTGATCCAACCTACAATGTTCTTTTTGGAAAGAGGGATGAGCCGTTACTACTAGCTTGTGCACGCCAACTTATCGAACACATAAGGTAA
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Protein seq | MLSFMCRTSPSRWIYGNKTDIVISKYEGSFMVMVTQIGCMGTILAARKDESVFSDPTYNVLFGKRDEPLLLACARQLIEHIR |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.193611 | 0.173181 | 0.331690 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0395500 | RBH | 1.175801 | 1.318644 | 2.165396 |
Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0339600 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0015610 | RBH | 0.000000 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015390 | RBH | 0.0 | 0.0 | 0.261026 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015640 | RBH | 0.0 | 0.0 | 0.000000 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015090 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015140 | RBH | 0.000000 | 0.000000 | 0.000000 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0218500 | RBH | 0.116344 | 0.172244 | 0.29636 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015050 | RBH | 0.0 | 0.0 | 0.000000 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0215000 | RBH | 0.0885165 | 0.0788255 | 0.4971225 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015040 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0014890 | RBH | 0.000000 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0015050 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015140 | RBH | 0.0 | 0.0 | 0.193427 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014840 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015240 | RBH | 0.000000 | 0.0 | 0.000000 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015060 | RBH | 0.000000 | 0.0 | 0.0 |