Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0395500 | OGI:10044080 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:13265745-13269460 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACGTGTCCTCCGCTCATTGGTTGAGTTGCGCCGCCGCCTCTCCTCCGCTCCACCCCCGCTCTCTCTCTCGAGTCGCCGCCGGAGACGACGACGGCGGCGGCGGCGGCGAAGGCCCGGAGAGCTCGCCGTCTGATTGCGCCGGTATGACCTCTTCTTCTTCCTGATTTACTCGGAGAACTCCCTGATTCGACCACCTGCTCAGCCCCCTCTTTCTAGCGACGGCTTCGCCGCCGTGAACCGCCGACAACTTCCCCTCCTCGGCCGCCGCCGCGCAGGAGGGGGATTGGTCGAGTGCGCCGCCAACCTCACAGCTCCCGACGGCCATAACCCTCCTCTTCCCCCCCCCCCCCCCCCAGTACTTTGCCCCCTAACTCCTTTGTTGATTTGGGATTTCCGCGGGGATTTCTTTTTTTGAAGAATAAGGCGGCAGGAGCTCTGCCGATTATATTAGAAGAAGTAAATAAAAGAAGAATAGGGTGGTTTAGACGAATACAGGTTGAAGAGATTACAACTTCGGGGGAAGAAGGATGGGGTAGAAAATCAAGGCGGTTTGAGAGCTAATTCGCGTAGGTCTATGTCTTGTATAATTAGGTTTACGACTTGTGCTGTCGTGCTTGGTTGCTGCTGAAAAATTCTTGTGTTTCATTGTAGCCAGATGTGCCACCAAGTCATCACGAGGAGATCAAGCTGTTCTCGCTTGTGTTTTTTTTTACTTCCATTGGCCGTGATATCATCCACCCAAATTTTGAGGTTTTGTGACGGCGGCTTTGGATCAGACCCTCTCATTGTCGAAACTCTGTTCCATACTTGCCTCGTGAAGGGGCAGTCTCTGAAGAGATGATCGGTGTCTTCAAAATCTTCGCTGCAATGCGAGCAAATCCAGTGGCAAGGCCAATGTCTAATTAGCAGGTTTTCAGCCGTTAGGGTTTTTTGGTGTAGAATCAACCATCCTAAAAATTATTGTTTTGGCTGTGCTTGAGAGCCCCAAAGATGACTGAATTCTTGTTTAGAGCATGATCCAATGAATTGCGCAAGGTAGGCACTTTTGGATATGCAGGTTCCAGTTTCATTTCTTGTCCAAATTATGTCATCCTCAGTGCCCAATTGCAATTGAATTTGAGATATGAGTCCACCTAGTTGAACTAGTTCATTGATGGTTTCAATCTCTGTGATTTGTCGGAAGGAGGTAATCCATGTGTTGTCTTGAAGTTCGGTCGACACCATTCTATTTTTCCTTATTGCCAGTTTATAAAGGTTTGGGGCAATATCTTTTACGCACCAGCCATTTAGCCAATTATGCGGGGATTTCTCGAAGCGAACGCTGTGATTTAGGGATTCAGAAGCTGCGTGGCTGTTCTGTAACTTCTGCTTAGTGAATAGAAGTTTATTTGGGTTCTCTTATGTGTTGGTGTGTCGATGACCTTCTTTGTGGTCTCTCTGATTACTCGCAGTATGCTTGTTTCGCAGATGGAGATGGGGATGAATTCTGTGCAGCCGAATGCTCAGTTTCCTGTGCCGCACAAGTCCCTCTCTTTGGATATCAATGTGAGAGCCTTTGCTCCAGTAACTGTTAAGCATATATTAGTGCATTGCATATGACTGCGATAAAAACACCTTTTAGAAAAACAGTTTGTTAAAACTGTTCCTGGATTAGAACTCGATTCAACATGTCATCGCATATCGTTAGCCATTGCCCGTAAGAACAAGTTTGTTCTGTCGTTGGACGCGAACATGATCTGCATTGGCTATCATACTTTAGTCAATTGTTATCACTTTGGCAAATTGTAATTGTCTAGTCCTTGCAAAAACCACATTTGCATTGCTTGGTGTTAGTTATTTCAGTTCTTTGCGTGCAGCTAACTTATTTTCCTTCTTGGTTTTCTAGGGCAATAAGACAGATATTGTTATCAGCAAGTATGAGGATAACTTTATGGTTAGTTACACCTTGCAAGTGATATTTATTTGATTGGATGACAAGTTTTCACATATAAAATATGCTCACCTAATAATAAAATATACAGGTGATGGTGACACAAATAGGATGCATGGGAACCATACTAGCTGCCAGGTATGTTGTTTATTCTCACATATAGCATGGTTTATTCTGGGCATTGCCAGTTCAGGATAGACAATTCTTTCCATGCTATTAGTCCTATCCAAATTTTAAACCTTTAGCTCTCAGCTTTTAGCTTATGTTTCTGAAAGAACAGTGAGGATCCATCCACAATTCCGCATACATATGTTGGTGCGTTTATCCGCTAGTTGCAAAAAGGCTAGGAAACTGTCAACATAGATTTTGGAGTGCATGTCAGGTCATAACTCATGACCTCATGATGTTACAGTTTATACAGGATAATGCTTCTGTTATTTCTTAAACACGATAGATGATAGTTGACAGCTAGCACTTTATTGATGATATACCATTGTAGTTGTTACTATGTTCTGTTTTTCCTGCCACTTTAGTATTTCTGATCATGTTTTCTTCCTCATTAATAGGAAAGATGAAAGTGTTTTTTCTGATCCAACCTACAATGTATCTGTTCTTTTTGGAAAGAGAGATGAGGTAAGGTTATTATACTGTTCAATGTAAGGTCAGACCATGGATAGATCTAATGAATGTGCATATTGTTTTGACCGCAGCCATTACTACTAGCTTGTGCACGCCAACTTATTGAACACATAAGGTTTGATCCCCCACCCCAACCATTATTCGAAGAACTTCTTGTGTGATATCTACTTGCTTCTCATGCAACTAAAAATTAAACTTCATGCCAATTTCGTGGATAAGAAATATAATTGAAACTGTGTCTGCTTCTATCTATGATTCCATTCAATTTTGAATGTAATTTTCACCAATAAGCTCCTCTTCTTTTAAGCTGCTCTTGGATTTGATTATTTAGATGCAAATGTCTCCAGCAGTGACCCTTTTAATTGTGGTCAGTGATTTTTTTGTCTCACGCAATTATTGTGACACTTCGGCTTCGGTTGCTAAAGTTAGTTACATAATTTGTCCAGCTCTGATTTGTAAACTGTCCTTTGGCACTTGTACCACACTCCATTTTCTTACAGACACATACTAAAGGAATATTCTTTGTTGCAGTGGTAGTGGCTCAGCACGGTCATTGATGATATCTCTTGGTCTGAAGGATCATTCCCAGGTATTATTTGAACTTCCCTTCATATGACTGCAATTCTCCGTGTTTTTCTCCTGAATCTTGCCAAAGCAGCAAGCATGGTCGACTGTACTGTGCATATTAGTGTGTTCTGAGATTAGACCCCATTATTTTGCATTGGAATCAATAGTATTCTCGTCATCTCGTGTATGTATCTGAAACAATTTTGTTACTTCTGCAGGCAACAATGAAATATATTGTTTCCACCATAATTGAGAACCGCCTATGGTAATAGTTTTGCATACCGAGCTGGGATTGGAATGGCTGGGCACATATATATTCACTTCATCAACATAGATGTTGACATGATTAGTGCTGAGCAATTAACACTCACCAATCTAGAATTTTGTAACTATGATTTCTTTGGAGTCGATGTATCACAAAGTAGTTATATAACCAAAGTTATAGCGAGAATTGCACTACTAGCTTTGATGAGTATTTCATCTACGAGCTTCTGAATGCTAATGGTTGTATTCCTGTTGCTTTGCTAATTGGGTTAATTTGGGGCCCAAAATTGGTGAAAGCAAAGCACTTTTCTGGAGC
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| CDS seq | GTTGCGCCGCCGCCTCTCCTCCGCTCCACCCCCGCTCTCTCTCTCGAGTCGCCGCCGGAGACGACGACGGCGGCGGCGGCGGCGAAGGCCCGGAGAGCTCGCCGTCTGATTGCGCCGATGGAGATGGGGATGAATTCTGTGCAGCCGAATGCTCAGTTTCCTGTGCCGCACAAGTCCCTCTCTTTGGATATCAATGGCAATAAGACAGATATTGTTATCAGCAAGTATGAGGATAACTTTATGGTGATGGTGACACAAATAGGATGCATGGGAACCATACTAGCTGCCAGGAAAGATGAAAGTGTTTTTTCTGATCCAACCTACAATGTATCTGTTCTTTTTGGAAAGAGAGATGAGCCATTACTACTAGCTTGTGCACGCCAACTTATTGAACACATAAGTGGTAGTGGCTCAGCACGGTCATTGATGATATCTCTTGGTCTGAAGGATCATTCCCAGGCAACAATGAAATATATTGTTTCCACCATAATTGAGAACCGCCTATGGTAA
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| Protein seq | VAPPPLLRSTPALSLESPPETTTAAAAAKARRARRLIAPMEMGMNSVQPNAQFPVPHKSLSLDINGNKTDIVISKYEDNFMVMVTQIGCMGTILAARKDESVFSDPTYNVSVLFGKRDEPLLLACARQLIEHISGSGSARSLMISLGLKDHSQATMKYIVSTIIENRLW |
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| Function | Proteasome assembly chaperone 3 [UniProtKB/Swiss-Prot:Q55G88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0395500 | OsNip_10t0395500-01 | Chr10 | 13265745 | 13269460 | + | RAP2018-11-26 | ||
| CDS seq | GTTGCGCCGCCGCCTCTCCTCCGCTCCACCCCCGCTCTCTCTCTCGAGTCGCCGCCGGAGACGACGACGGCGGCGGCGGCGGCGAAGGCCCGGAGAGCTCGCCGTCTGATTGCGCCGATGGAGATGGGGATGAATTCTGTGCAGCCGAATGCTCAGTTTCCTGTGCCGCACAAGTCCCTCTCTTTGGATATCAATGGCAATAAGACAGATATTGTTATCAGCAAGTATGAGGATAACTTTATGGTGATGGTGACACAAATAGGATGCATGGGAACCATACTAGCTGCCAGGAAAGATGAAAGTGTTTTTTCTGATCCAACCTACAATGTATCTGTTCTTTTTGGAAAGAGAGATGAGCCATTACTACTAGCTTGTGCACGCCAACTTATTGAACACATAAGTGGTAGTGGCTCAGCACGGTCATTGATGATATCTCTTGGTCTGAAGGATCATTCCCAGGCAACAATGAAATATATTGTTTCCACCATAATTGAGAACCGCCTATGGTAA
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| Protein seq | VAPPPLLRSTPALSLESPPETTTAAAAAKARRARRLIAPMEMGMNSVQPNAQFPVPHKSLSLDINGNKTDIVISKYEDNFMVMVTQIGCMGTILAARKDESVFSDPTYNVSVLFGKRDEPLLLACARQLIEHISGSGSARSLMISLGLKDHSQATMKYIVSTIIENRLW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.175801 | 1.318644 | 2.165396 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0339600 | RBH | 0.193611 | 0.173181 | 0.331690 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g25600 | RBH | 0.746495 | 0.845856 | 0.531620 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0395500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009550 | RBH | 0.000000 | 3.012784 | 2.671376 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009650 | RBH | 0.0 | 0.0 | 0.625571 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0009460 | RBH | 0.964825 | 2.553797 | 5.686869 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009860 | RBH | 0.087092 | 0.371506 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009610 | RBH | 3.606762 | 0.0 | 4.797294 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0228100 | RBH | 3.6480515 | 11.252108 | 8.165296 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0009610 | RBH | 0.000000 | 0.789928 | 0.974470 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0246900 | RBH | 5.07812 | 10.4900125 | 15.2251135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0009410 | RBH | 0.020934 | 0.135827 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0009360 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0009800 | RBH | 5.463018 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0009900 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009710 | RBH | 0.0 | 2.661438 | 0.899475 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009680 | RBH | 1.228976 | 6.069949 | 8.062435 |
