Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_01g0014840 OGI:01039450 | 16/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr01:13072290-13074690
Gene Symbol -
DNA seq

cttgtttcacagatggagatggggatgaattctgtgcagccaaatgctcagtttcatgtgccgcacaagtccctctcgttggatatatgtaagagcctttgctctactaacttttaagcatatatgatgagtgcattgcatatgattgcgataaaaacaccttcaagaaaacagtctgataaactgttcctggattagaactcaattcaacatgtcatcgcatatcgttagccattgcccgtAagaacaagtttgttctgtcgttggatcagaacatgatctgcattggctatcattgctttgtcgattgttatcactttggcaaattgtcactgtctagtccttgcaagaatcacatctgcattgtttggtgttagttatttcagttctttgcgtgcagctaacttattttccttcttggttttcaagggcaataagacagatattgttatcagcaagtatgagggtagctttatggttagttacaccttgcaagtgatatttattcgattggatgacaagttttcacatataaaatatgctcacctaatcataaaatctacaggtgatggtgacacaaataggatgcatgggaaccatattagctgccaggtatgttttttattctcccatataacatggtttattttgggcattgctagttcaggatagacaattctttccatgcttttagtactatcgaaatttgaaacctttagctctcagctttttgctgatgtttctgaaagaacagtgagaatccatccacaattccgcatacatatgttggtgcgtttatcccctagttgcaaaaaggctaggaaactgttgagcatagatttcggagtgcatgtcaggtcataactcataacctcatgatgctacagtttatacaggataatgcttctgttatttcttaaacacgatagatgatagttgacagctagtactttattgatgatgtaccattgtagttgttattatgtgctgtatttcctgtcactttagtatttctgatcatgcTttcttgctcattaataggaaagatgaaagtgttttttctgatccaacctacaatgttctttttggaaagagggatgaggtaaggttattatactgttcaatgtagggtctgaccatagatagatctaatgaatgtgcatattgttgtgatcacagccgttactactagcttgtgcacgccaacttatcgaacacataaggtaagattccctcccaccccaccccatatatccgaagaacttcttgtatgatatatgcttgcttctcatgcaactaaaaattaaacttcatgccaatttcgtggataagaaatataattgaaactgtgtctgcatctgcctatgattccattaaattttgaatgtaattttcaccaataagctccacttcttctaagctgctcttggctgagttcttttgcatgagttcccaactcactctgaccgtttttcgcgcgcacgcttttcaaactactaaatggtgtattttttgcaaaaaatattctatacgaaagttgcttaaaaaatcatattgatccatctttcaaaaaagaattagctaatatttaactaatcatgctctaatgaatcgctccgttttttgtgcgggagggatttgctcccaacaagaagtaacaaacacatccttagatgcaaatgtctccagcaatggcccttttaattgtggtcaatgatttttttatctcacgcaactattgtgacacttcggttgctgaagttagttacataatttgtccagctctgatttgtaaactgtcctttggcacctgtaccacactccattttcttacagacacggtcattgatgatatctcttggtctgaaggatcattcccaggtattatttgaacttcccttcatatgactgtaattctccgtgtttttctcctgaatcttgccaaatcagcaagcatggtcgactgtactgtgcatatcagtgtttctgaggttagaccccattattttgcattggaaccaatagtattctcgtgcatgtatctcaaacaattttgttacttctgcaggcaacaatgaaatatattgtttccaccataattgagaaccgcctatggtaatagttttgcataccgagctggggttggaatggctgggcacatatctattcacttcatcaacagagatgttgacatgattagtgctgagcaattaacactctcttaccaatctagaattttgtaactatgatttcttcggagtcgatgtatcacaaagtagttatataaccaaagttatagcgagaattgcactactagctttgatgagtatttcatctacgaacttctgaatgctaatggttgtattcatgttgctttgctaatttgtggcctaaaatcgct

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CDS seq

atggagatggggatgaattctgtgcagccaaatgctcagtttcatgtgccgcacaagtccctctcgttggatatatatattgttatcagcaagtatgagggtagctttatggtgatggtgacacaaataggatgcatgggaaccatattagctgccaggaaagatgaaagtgttttttctgatccaacctacaatgttctttttggaaagagggatgaggcaacaatgaaatatattgtttccaccataattgagaaccgcctatggtaa

Protein seq

MEMGMNSVQPNAQFHVPHKSLSLDIYIVISKYEGSFMVMVTQIGCMGTILAARKDESVFSDPTYNVLFGKRDEATMKYIVSTIIENRLW

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_01g0014840 OsLaMu_01g0014840.01 Chr01 13072290 13074690 + NAM
CDS seq

atggagatggggatgaattctgtgcagccaaatgctcagtttcatgtgccgcacaagtccctctcgttggatatatatattgttatcagcaagtatgagggtagctttatggtgatggtgacacaaataggatgcatgggaaccatattagctgccaggaaagatgaaagtgttttttctgatccaacctacaatgttctttttggaaagagggatgaggcaacaatgaaatatattgtttccaccataattgagaaccgcctatggtaa

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Protein seq

MEMGMNSVQPNAQFHVPHKSLSLDIYIVISKYEGSFMVMVTQIGCMGTILAARKDESVFSDPTYNVLFGKRDEATMKYIVSTIIENRLW

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0339600 RBH 0.193611 0.173181 0.331690
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g25600 SBH 0.746495 0.845856 0.531620
Nipponbare | IRGSP 1.0 | RAP-db Os01g0339600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0015610 RBH 0.000000 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0015390 SBH 0.0 0.0 0.261026
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0015640 SBH 0.0 0.0 0.000000
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0015090 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0015140 SBH 0.000000 0.000000 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0218500 RBH 0.116344 0.172244 0.29636
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0015050 SBH 0.0 0.0 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0215000 RBH 0.0885165 0.0788255 0.4971225
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0015040 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0014890 RBH 0.000000 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0015050 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0015140 SBH 0.0 0.0 0.193427
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G015240 SBH 0.000000 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0015060 SBH 0.000000 0.0 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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