Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_01g0301700 OGI:01033650 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr01:11089065-11093987
Gene Symbol -
DNA seq

AAAAAAAATGGATCTTAAGCTGTGCAAAATAGAACTAAACGTGTGCATGTACAAAACACGTTGATATATATTGCACGGAGTAAATCGAAGAAAATTCAATCTGGCAAGGGAAACATTTTGAAGCTAATTCGAGAGTAAGGTAGGAGCTACCAGTTAATCTAAACATGACTAATCGTCCACCTCAACTGTCAGGCCCTGCATGCAACTGAATCCATCACATCCACCAAGTTCTGAATGGATGTAATTCCACCTGGCTTGTTAGTGATTGCGTGGGTAAAGCACCGAGCTCCCACCCTTTGCAGCATATTCATGCTAGCATCAAGCTCCTTCATATCCCAGTGTCCCGTCTTCCAACGATTTTGCAACCTAACACCATCATCCTTCAGTTCATTTTCAGCCATGATTATAACTTGTTAGTGCTTAAAGTGCTGCTGGGTGGGCTGCTTGACATCAATTTCATCTCCAGCCATTTCAAGGACCTCCAACTGAAAGGGTTTTCCTGAGAACCACCCTGCGTCAACACCAAACAAATTGTCCGTGACACTCGCTATGACTTATGAGATGATACCATAGCGAAGGATCTTAAAAAAATAATAAAATCAAGGGTATGACTGCTCCCCGAATTACGAAATGTGACCATATAATTGTAATGGTTAGAGTAGGTTTGGTATTTGCCTATTTTGTTGCCTTACCAAAATGTAGTAGATGGCAAAAATCCAGACATGCCCCTAGTCTCAACTCTCAACTCCTTCAGTGGAGATAGCTTTGAGCGATTCAAACATTTCAGGCCGAATATCAACCCTGTCAACTTCCATGCGCTGAGGGATGGATGGATTTGTTCTACCTACAGATATATAGGTCCGGATCAAGGCTTCATAGGCTTCAGCATCAAGGCGACCGAGATTCTTCAGGCATTCACAGAACGTCTCCATCCCATCCACATCCTTTGAATCCTCAAAGTGCTTCAGATATCTGTTCACAAGCTTTTCTGGCACCCAATCCTGCCCCTTCACCATTTTCTTTGCATCTTTCCAGACCTGCAGTGCCTCATTCATTTTAGATTTCTCCAAATAGAATTCTGCGAATATGCAAAATGTTCTGTAGTTGGAATGATCCTGAGCCATGGTTGTCTGACGCATAGCCTCAGCTTTGTCTACCATGCCCTTATCAAGGTAAGCTTGGATGATAATATTTGGTATTTTCATGTCATAGTGCTCATGGCTTGATTCCCATTCCTGAAAGATTTGCTGCAGGGTGTCAAAATCATCCAACTTTTTCAGAGCTTTAAGCATCACTAGATAGCTTCTATTTGTGCATTTCTTGAATGCAGACTTTAAAGACTCCCAGATTCTCTTGACCTCGGACAAGTTGCCGGAATTGGCATAGTGGGAGAGAAGACAATGCCAAGAGAAAACGTCATGCTTGTCCAGAACTTCCTCAGCTTTCTTAAGGGTGAATTCTGCCTTGTCAAACTGCTGCAGCTTATTATAACCGTTAGCAAGTGTAGCATACAAGGACCAAGGAACTGAATTTACCTCCTGCAATTCTTTCAGGACCTTCTCAGCGGACTCTATGTCATTCATCATAATGTAGCTTTCTGTTAGCACAAAGTATGAAAACTTGTTTGGTTGTATACCACTTTCTTGCATTTTTACAACTGTAGTGGGGATTTTCTCTGGTTGATCTGTCTTCAGGTATAAGCACATCAAATTGTTGTACACCAATATATCTGAAACAATGTTCATCGCTTTCATATTTTCATAGAGTTCTAGGCCTTTCTCTGCCATCCGGTGCTCAGCATAGCAGTTAAGCAGAGTGGAATAAGTTTGCTTTGACCTGAAAATATCTGGAAGGCTCCCGAAGTACTCTTCTGCAGCATGTATACCATTCAGTTTGCTAACAAGGTCAAGCCGCAAAGCATGATGCTTGAGCTCCAAGTTCACTCCACGAGCTTCCATCCAGTCCATCAACTGTAAACATGAAAACATGGTCAGTCATCACATGGCCAACGAAAAATACCTTGCCCAGCTGCCCCCAAAAGGGAGAAAACCCAACTCGAATGTTCAATGTTTCTTATGATACAGAACCCTGAAGGAAAGAGAACAGTTCTGTAAAACAGAGTATTTATCTTTTCTGATGATTGCAATGGTGCAAAAGACTCGAAATTACAAAAAGTAAATCACACAAATTGACATCAGTTTATATCGGACATACAATTACAAATATATAACCAAAGTGACAGGAACATCTTTATGTGGTTACCACACAAAGTTGAAATGTAATAAGCACAAAGGAGCCCACAAAGCTTTTGATAGAAAAGAACTGAGACCAAATACAGCATGCCATTCCAATTTAGGTCAACCGCTCAGTGTAGCGAATAGATATTGCCACCCACCCAACATTGCTTCACCAGTGGCAGTGTAAGCAATACCATTACTATTTGTTTGACAGTGTTACTGTACCAAATTTCTGTGATGAAAAACAATCAGTTGATTGCAGGCTCTGTTTTATGGAAGACGATTATTGCTAAACTATGTAAAAGCTACTCCCTCCCTCCCAAAAATATAGCTACCTTTAGGACTTCTCAAGGAGATTATGAAAGTATATAGAATTAAATGGATGAAGGTTGTGATTGGTTGAGATAGGTGGTAGATAGAGAAATTAAATGAAATGGTTGAGACGAAGAAGTATGTAGAGAAATTAAATGAGAGATGATTGTGATTGGTTGAAAGAAGAAAGTAGATGAAGAAATTAAATGAGAGATGGTTGTGATTGGTTGAGATGAGAAAGTGATGAAGTAGCAGCTATATTTTGGAATAAAATTTTAATGCTAAAGGTAGCTATACATTGTGACGAACAGAGCAAAATATAACAGCTTGTTATGACAGTTGTGTGCATTAAACAAGATGCGAGAGACTGCATATATTCATTAGTACAAAAGCTAGTAGAGATAAGGATGATAATGGCAAGTTTTCTTCTATTTGTAAGGAAGGTCTTATTAAAGAGCAAGAGTGATGACATGTCATATGATAAATTGAACTAGGAATCAAACATATCATTGAATTTAGTAAAATGAAGGATAATGGTAGCAACCTAAAACTAATTCAGTAACTCAAGTTAAGACTACTTTAAACTTAAGGAATGCAATGTTGCTTCAGAATTCTGAATCACATAAATGCATCCAAAGAAAGATTAAAGGGCAAAGCAAATATTATTCACATGAACTATGAGGACAGAGGATTAAGAAAATAAGCATTTAAAGCCGGATCCATTTCTACCATGGATGTAGTATGTTTTTGCTAATATGGCATATAATCCCCAGCACATACACTGAATCAGTAAACGGAAAAGGTATTATGCCCCTTCCCTGTCACATAGCTCCAATGTGGAAAAATGACCTACTAAACAATGGTGGTATCAGTCAAGGAGGGTTACGTGTGCTAGGTTTAGAAGGAAACTGCTGCATTGCTAATGTAGTCCATTTCAGGATATAGGCATGATAACATGTCAGATTTATGAGGAAAACAACTAGTAGTACAGAGCTAATGTAACCTGATGGGGTGATACATAGAGATCAAGGACACACAGCTCCTAGGAAAACACAGGTACATGACTAACACGACTACCCCTGGTTTATCTTGCATCGTTAAACTGGATCGAACTAGCTCATTTGGGCTTAGCCAAGAGAAGCAGGGCTCCCCATTTGGTTGCACTACAGAAACAAAGGAAGCAGGCATGTGCGAGTTGGACATTCTTCATCTGCTTGCCCACTTGGGAGAGCCAGTTCAGCTCTTCTCCATCGGCAATATTTCCTCTGCCGTTAGCCCATTACTGGGTGTATTGCTGAGTAAAGGTAGTTTCTTTCCTGTACTGTCCTCACTGCACATCAAAACACACTTGAACTGCTTCAATATGGATATGGATATGGATTTTTTTTTTTGAAAAAAGGAATTATACAAGCAAGCAAAGTTCCACATAAAAATGGAAACCTGATGGTTAACATCTTGGTCTTGGTATACATCAACCATTCCGTATTATCCATCAAATTATACAGAGGCAGTTTAGGTAGTCTGAAGATCATGAAGAAAAATCCACAGTAAAATATATTTTGATCCATATGACCAACAAAAAACAGACTAACTTTAAACAAGACAAGGACCTTCTGAGTTCTCCCCTCTTCTACAATACATTAATCAAGCGTAGGATTAAGCTTAATCCAGTATGACAGTTCTTGGAATACCAGAAGCAAATATTCAGTTCAGTCACAATCGTTAAAGAATCAACAAATATAGGTTCTCAGTTCTGGCCTGCGTTTCCCTTAACAAATTCTCGAAATAACGGGGAAAACACATTATGCTGCTAGATTACTACTAGTACATTATAGTTCCCTAAGATATTGGCAAATGCTATAATATTACAAACGGAGTTGTTAACACAAAATTACCCTAAAATACAGTGTAGATAGGACGAAACAATTGGAGTTTCAACCGGATCCAATCGACTGAAACCTTACCATTACATCCCCAATCCAAATTAAGCCAGAGTTTTCGCGGGAGGGGACTGGGGTCTGGGGGTGGGTGTGTGTGGGGGTGAGGGGGCTCACCTGGAGGGCGTGCTTGTTCTGCTTGAACTTGCGGAACCTGCGGACGCAGAAGAGGACCTGCTCCTCCGAGAGCGGGCGCCTCTCGCGGAGCCACCGGCCGAGCTCCTCCACCATTCCACCCGACGGCAGGTGCGCCGACAGCCTCGCGTAGAGCGCCCACCTCGCACCATCCAGCGGTCGCCGCTCCGGGCTCGCGTACTGGAGACCGCGCGCTTGTCTCCTCGGGGCCTGTGACTGTGGGAGGCGCCGGAGCGCCGCCGTGGCCGCCGCGCGCAGCATCGCTAGGCGCTAGGCAGTTCTTTTGGTTTTGGAGGATCTGT

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CDS seq

ATGCTGCGCGCGGCGGCCACGGCGGCGCTCCGGCGCCTCCCACAGTCACAGGCCCCGAGGAGACAAGCGCGCGGTCTCCAGTACGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTCGGCGCACCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGGTGGCTCCGCGAGAGGCGCCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCGCAAGTTCAAGCAGAACAAGCACGCCCTCCAGTTGATGGACTGGATGGAAGCTCGTGGAGTGAACTTGGAGCTCAAGCATCATGCTTTGCGGCTTGACCTTGTTAGCAAACTGAATGGTATACATGCTGCAGAAGAGTACTTCGGGAGCCTTCCAGATATTTTCAGGTCAAAGCAAACTTATTCCACTCTGCTTAACTGCTATGCTGAGCACCGGATGGCAGAGAAAGGCCTAGAACTCTATGAAAATATGAAAGCGATGAACATTGTTTCAGATATATTGGTGTACAACAATTTGATGTGCTTATACCTGAAGACAGATCAACCAGAGAAAATCCCCACTACAGTTGTAAAAATGCAAGAAAGTGGTATACAACCAAACAAGTTTTCATACTTTGTGCTAACAGAAAGCTACATTATGATGAATGACATAGAGTCCGCTGAGAAGGTCCTGAAAGAATTGCAGGAGGTAAATTCAGTTCCTTGGTCCTTGTATGCTACACTTGCTAACGGTTATAATAAGCTGCAGCAGTTTGACAAGGCAGAATTCACCCTTAAGAAAGCTGAGGAAGTTCTGGACAAGCATGACGTTTTCTCTTGGCATTGTCTTCTCTCCCACTATGCCAATTCCGGCAACTTGTCCGAGGTCAAGAGAATCTGGGAGTCTTTAAAGTCTGCATTCAAGAAATGCACAAATAGAAGCTATCTAGTGATGCTTAAAGCTCTGAAAAAGTTGGATGATTTTGACACCCTGCAGCAAATCTTTCAGGAATGGGAATCAAGCCATGAGCACTATGACATGAAAATACCAAATATTATCATCCAAGCTTACCTTGATAAGGGCATGGTAGACAAAGCTGAGGCTATGCGTCAGACAACCATGGCTCAGGATCATTCCAACTACAGAACATTTTGCATATTCGCAGAATTCTATTTGGAGAAATCTAAAATGAATGAGGCACTGCAGGTCTGGAAAGATGCAAAGAAAATGGTGAAGGGGCAGGATTGGGTGCCAGAAAAGCTTGTGAACAGATATCTGAAGCACTTTGAGGATTCAAAGGATGTGGATGGGATGGAGACGTTCTGTGAATGCCTGAAGAATCTCGGTCGCCTTGATGCTGAAGCCTATGAAGCCTTGATCCGGACCTATATATCTGTAGGTAGAACAAATCCATCCATCCCTCAGCGCATGGAAGTTGACAGGGTTGATATTCGGCCTGAAATGTTTGAATCGCTCAAAGCTATCTCCACTGAAGGAGTTGAGAGTTGA

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Protein seq

MLRAAATAALRRLPQSQAPRRQARGLQYASPERRPLDGARWALYARLSAHLPSGGMVEELGRWLRERRPLSEEQVLFCVRRFRKFKQNKHALQLMDWMEARGVNLELKHHALRLDLVSKLNGIHAAEEYFGSLPDIFRSKQTYSTLLNCYAEHRMAEKGLELYENMKAMNIVSDILVYNNLMCLYLKTDQPEKIPTTVVKMQESGIQPNKFSYFVLTESYIMMNDIESAEKVLKELQEVNSVPWSLYATLANGYNKLQQFDKAEFTLKKAEEVLDKHDVFSWHCLLSHYANSGNLSEVKRIWESLKSAFKKCTNRSYLVMLKALKKLDDFDTLQQIFQEWESSHEHYDMKIPNIIIQAYLDKGMVDKAEAMRQTTMAQDHSNYRTFCIFAEFYLEKSKMNEALQVWKDAKKMVKGQDWVPEKLVNRYLKHFEDSKDVDGMETFCECLKNLGRLDAEAYEALIRTYISVGRTNPSIPQRMEVDRVDIRPEMFESLKAISTEGVES

Function Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [UniProtKB/Swiss-Prot:Q9FZ24]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_01g0301700 OsNip_01t0301700-01 Chr01 11089065 11093987 - RAP2018-11-26
CDS seq

ATGCTGCGCGCGGCGGCCACGGCGGCGCTCCGGCGCCTCCCACAGTCACAGGCCCCGAGGAGACAAGCGCGCGGTCTCCAGTACGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTCGGCGCACCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGGTGGCTCCGCGAGAGGCGCCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCGCAAGTTCAAGCAGAACAAGCACGCCCTCCAGTTGATGGACTGGATGGAAGCTCGTGGAGTGAACTTGGAGCTCAAGCATCATGCTTTGCGGCTTGACCTTGTTAGCAAACTGAATGGTATACATGCTGCAGAAGAGTACTTCGGGAGCCTTCCAGATATTTTCAGGTCAAAGCAAACTTATTCCACTCTGCTTAACTGCTATGCTGAGCACCGGATGGCAGAGAAAGGCCTAGAACTCTATGAAAATATGAAAGCGATGAACATTGTTTCAGATATATTGGTGTACAACAATTTGATGTGCTTATACCTGAAGACAGATCAACCAGAGAAAATCCCCACTACAGTTGTAAAAATGCAAGAAAGTGGTATACAACCAAACAAGTTTTCATACTTTGTGCTAACAGAAAGCTACATTATGATGAATGACATAGAGTCCGCTGAGAAGGTCCTGAAAGAATTGCAGGAGGTAAATTCAGTTCCTTGGTCCTTGTATGCTACACTTGCTAACGGTTATAATAAGCTGCAGCAGTTTGACAAGGCAGAATTCACCCTTAAGAAAGCTGAGGAAGTTCTGGACAAGCATGACGTTTTCTCTTGGCATTGTCTTCTCTCCCACTATGCCAATTCCGGCAACTTGTCCGAGGTCAAGAGAATCTGGGAGTCTTTAAAGTCTGCATTCAAGAAATGCACAAATAGAAGCTATCTAGTGATGCTTAAAGCTCTGAAAAAGTTGGATGATTTTGACACCCTGCAGCAAATCTTTCAGGAATGGGAATCAAGCCATGAGCACTATGACATGAAAATACCAAATATTATCATCCAAGCTTACCTTGATAAGGGCATGGTAGACAAAGCTGAGGCTATGCGTCAGACAACCATGGCTCAGGATCATTCCAACTACAGAACATTTTGCATATTCGCAGAATTCTATTTGGAGAAATCTAAAATGAATGAGGCACTGCAGGTCTGGAAAGATGCAAAGAAAATGGTGAAGGGGCAGGATTGGGTGCCAGAAAAGCTTGTGAACAGATATCTGAAGCACTTTGAGGATTCAAAGGATGTGGATGGGATGGAGACGTTCTGTGAATGCCTGAAGAATCTCGGTCGCCTTGATGCTGAAGCCTATGAAGCCTTGATCCGGACCTATATATCTGTAGGTAGAACAAATCCATCCATCCCTCAGCGCATGGAAGTTGACAGGGTTGATATTCGGCCTGAAATGTTTGAATCGCTCAAAGCTATCTCCACTGAAGGAGTTGAGAGTTGA

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Protein seq

MLRAAATAALRRLPQSQAPRRQARGLQYASPERRPLDGARWALYARLSAHLPSGGMVEELGRWLRERRPLSEEQVLFCVRRFRKFKQNKHALQLMDWMEARGVNLELKHHALRLDLVSKLNGIHAAEEYFGSLPDIFRSKQTYSTLLNCYAEHRMAEKGLELYENMKAMNIVSDILVYNNLMCLYLKTDQPEKIPTTVVKMQESGIQPNKFSYFVLTESYIMMNDIESAEKVLKELQEVNSVPWSLYATLANGYNKLQQFDKAEFTLKKAEEVLDKHDVFSWHCLLSHYANSGNLSEVKRIWESLKSAFKKCTNRSYLVMLKALKKLDDFDTLQQIFQEWESSHEHYDMKIPNIIIQAYLDKGMVDKAEAMRQTTMAQDHSNYRTFCIFAEFYLEKSKMNEALQVWKDAKKMVKGQDWVPEKLVNRYLKHFEDSKDVDGMETFCECLKNLGRLDAEAYEALIRTYISVGRTNPSIPQRMEVDRVDIRPEMFESLKAISTEGVES

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Gene Transcript Chromosome Start End Strand Source
OsNip_01g0301700 OsNip_01t0301700-02 Chr01 11092527 11093959 - RAP2018-11-26
CDS seq

ATGCTGCGCGCGGCGGCCACGGCGGCGCTCCGGCGCCTCCCACAGTCACAGGCCCCGAGGAGACAAGCGCGCGGTCTCCAGTACGCGAGCCCGGAGCGGCGACCGCTGGATGGTGCGAGGTGGGCGCTCTACGCGAGGCTGTCGGCGCACCTGCCGTCGGGTGGAATGGTGGAGGAGCTCGGCCGGTGGCTCCGCGAGAGGCGCCCGCTCTCGGAGGAGCAGGTCCTCTTCTGCGTCCGCAGGTTCCGCAAGTTCAAGCAGAACAAGCACGCCCTCCAGGTGAGCCCCCTCACCCCCACACACACCCACCCCCAGACCCCAGTCCCCTCCCGCGAAAACTCTGGCTTAATTTGGATTGGGGATGTAATGGTAAGGTTTCAGTCGATTGGATCCGGTTGA

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Protein seq

MLRAAATAALRRLPQSQAPRRQARGLQYASPERRPLDGARWALYARLSAHLPSGGMVEELGRWLRERRPLSEEQVLFCVRRFRKFKQNKHALQVSPLTPTHTHPQTPVPSRENSGLIWIGDVMVRFQSIGSG

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.335558 0.218307 0.901364

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0301000 SBH 1.436062 0.883966 3.013771
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g19548 RBH 0.179148 0.227830 0.185865
Nipponbare | IRGSP 1.0 | RAP-db Os01g0301700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0013850 RBH 0.000000 2.933087 2.688399
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0013610 RBH 0.000000 0.000000 0.585845
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0013860 RBH 0.952252 0.0 0.653232
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0013340 RBH 0.0 0.155535 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0013460 RBH 0.0 2.160072 0.076573
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0185100 RBH 1.1346625 1.610685 2.0927595
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0013380 RBH 0.0 0.105383 0.067004
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0183300 RBH 1.1148765 1.1534995 9.2855725
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0013370 RBH 0.000000 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0013440 RBH 0.120317 1.992765 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0013430 RBH 1.203521 8.081902 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0013540 RBH 0.020778 0.372701 0.151853
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0013220 RBH 0.077364 0.914687 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G013540 RBH 0.310258 0.586692 0.212690
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0013310 RBH 0.844416 0.0 1.640924
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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