Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0013220 | OGI:01033650 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:10999979-11004733 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaatcgtccacctcaactgtcaggccctgcatgcaactgaatccatcacatccaccaagttctgaatggatgtaattccacctggcttgttagtgattgcgtgggtaagcaccgagctcccaccctttgcagcatattcatgctagcatcaagctccttcatatcccagtgtcccgtcttccaacgattttgcaacctaacaccatcatccttcagttcattttcagccatgattataacttgttagtgcttaaagtgctgctgggtgggctgcttgacatcaatttcatctccagccatttcaaggacctccaactgaaagggttttcctgagaaccaccctgcgtcaacaccaaacaaattgtccgtgacactcgctatgacttatgagatgataccatagcgaaggatcttaaaaaaataataaaatcaagggtatgactgctccccgaattacgaaatgtgaccatataattgtaatggttagagtaggtttggtatttgcctattttgttgccttaccaaaatgtagtagatggcaaaaatccagacatgcccctagtctcaactctcaactccttcagtggagatagctttgagcgattcaaacatttcaggccgaatatcaaccctgtcaacttccatgcgctgagggatggatggatttgttctacctacagatatataggtccggatcaaggcttcataggcttcagcatcaaggcgaccgagattcttcaggcattcacagaacgtctccatcccatccacatcctttgaatcctcaaagtgcttcagatatctgttcacaagcttttctggcacccaatcctgccccttcaccattttctttgcatctttccagacctgcagtgcctcattcattttagatttctccaaatagaattttgcgaatatgcaaaatgttctgtagttggaatgatcctgagccatggttgtctgacgcatagcctcagctttgtctaccatgcccttatcaaggtaagcttggatgataatatttggtattttcatgtcatagtgctcatggcttgattcccattcctgaaagatttgctgcagggtgtcaaaatcatccaactttttcagagctttaagcatcactagatagcttctatttgtgcatttcttgaatgcagactttaaagactcccagattctcttgacctcggacaagttgccggaattggcatagtgggagagaagacaatgccaagagaaaacgtcatgcttgtccagaacttcctcagctttcttaagggtgaattctgccttgtcaaactgctgcagcttattataaccgttagcaagtgtagcatacaaggaccaaggaactgaatttacctcctgcaattctttcaggaccttctcagcggactctatgtcattcatcataatgtagctttctgttagcacaaagtatgaaaacttgtttggttgtataccactttcttgcatttttacaactgtagtggggattttctctggttgatctgtcttcaggtataagcacatcaaattgttgtacaccaataTatctgaaacaatgttcatcgctttcatattttcatagagttctaggcctttctctgccatccggtgctcagcatagcagttaagcagagtggaataagtttgctttgacctgaaaatatctggaaggctcccgaagtactcttctgcagcatgtataccattcagtttgctaacaaggtcaagccgcaaagcatgatgcttgagctccaagttcactccacgagcttccatccagtccatcaactgtaaacatgaaaacatggtcagtcatcacatggccaacgaaaaataccttgcccagctgcccccaaaagggagaaaacccaactcgaatgttcaatgtttcttatgatacagaaccctgaaggaaagagaacagttctgtaaaacagagtatttatcttttctgatgattgcaatggtgcaaaagactcgaaattacaaaaagtaaatcacacaaattgacatcagtttatatcggacatacaattacaaatatataaccaaagtgacaggaacatctttatgtggttaccacacaaagttgaaatgtaataagcacaaaggagcccacaaagcttttgatagaaaagaactgagaccaaatacagcatgccattccaatttaggtcaaccgctcagtgtagcgaatagatattgccacccacccaacattgcttcaccagtggcagtgtaagcaataccattactatttgtttgacagtgttactgtaccaaatttctgtgatgaaaaacaatcagttgattgcaggctctgttttatggaagacgattattgctaaactatgtaaaagctactccctccctcccaaaaatatagctacctttaggacttctcaaggagattatgaaagtatatagaattaaatggatgaaggttgtgattggttgagataggtggtagatagagaaattaaatgaaatatggttgagacgaagaagtatgtagagaaattaaatgagagatgattgtgattggttgaaagaagaaagtagatgaagaaattaaatgagagatggttgtgattggttgagatgagaaagtgatgaagtagcagctatattttggaataaaattttaatgctaaaggtagctatacattgtgacgaacagagcaaaatataacagcttgttatgacagttgtgtgcattaaacaagatgcgagagactgcatatattcattagtacaaaagctagtagagataaggatgataatggcaagttttcttctatttgtaaggaaggtcttattaaagagcaagagtgatgacatgtcatatgataaattgaaataggaatcaaacatatcattgaatttagtaaaatgaaggataatggtagcaacctaaaactaattcagtaactcaagttaagactactttaaacttaaggaatgcaatgttgcttcagaattctgaatcacataaatgcatccaaggaaagattaaagggcaaagcaaatattattcacatgaactatgaggacagaggattaagaaaataagcatttaaagccggatccatttctaccatggatgtagtatgtttttgctaatatggcatataatccccagcacatacactgaatcagtaaacggaaaaggtattatgccccttccttgtcacatagctccaatgtggaaaaatgacctactaaacaatggtggtatcagtcaaggagggttacgtgtgctaggtttagaaggaaactgctgcattgctaatgtagtccatttcaggatataggcatgataacatgtcagatttatgaggaaaacaactagtagtacagagctaatgtaacctgatggggtgatacatagagatcaaggacacacagctcctaggaaaacacaggtacatgactaacacgactacccctggtttatcttgcatcgttaaactggatcgaactagctcatttgggcttagccaagagaagcagggctccccatttggttgcactacagaaacaaaggaagcaggcatgtgcgagttggacattcttcatctgcttgcccacttgggagagccagttcagctcttctccatcggcaatatttcctctgccgttagcccattactgggtgtattgctgagtaaaggtagtttctttcctgtactgtcctcactgcacatcaaaacacacttgaactgcttcaatatggatatggatatggatttttttttttgaaaaaaggAattatacaagcaagcaaagttccacataaaaatggaaacctgatggttaacatcttggtcttggtatacatcaaccattccgtattatccatcaaattatacagaggcagtttaggtagtctgaagatcatgaagaaaaatccacagtaaaatatattttgatccatatgaccaacaaaaaacagactaactttaaacaagacaaggaccttctgagttctcccctcttctacaatacattaatcaagcgtaggattaagcttaatccagtatgacagttcttggaataccagaagcaaatattcagttcagtcacaatcgttaaagaatcaacaaatataggttctcagttctggcctgcgtttcccttaacaaattctcgaaataacggggaaaacacattatgctgctagattactactagtacattatagttccctaagatattggcaaatgctataatattacaaacggagttgttaacacaaaattaccctaaaatacagtgtagataggacgaaacaattggagtttcaaccggatccaatcgactgaaaccttaccattacatccccaatccaaattaagccagagttttcgcgggaggggactggggtctgggggtggGTgtgtgtgggggtgagggggctcacctggagggcgtgcttgttctgcttgaacttgcggaacctgcggacgcagaagaggacctgctcctccgagagcgggcgcctctcgcggagccaccggccgagctcctccaccattccacccgacggcaggtgcgccgacagcctcgcgtagagcgcccacttcgcaccatccagcggtcgccgctccgggctcgcgtactggagaccgcgcgcttgtctcctcggggcctgtgactgtgagaggcgccggagcgccgccgtggccgccgcgcgcagcatcgctaggcgctaggcagttcttttggttttggaggatctg
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| CDS seq | atgctgcgcgcggcggccacggcggcgctccggcgcctctcacagtcacaggccccgaggagacaagcgcgcggtctccagtacgcgagcccggagcggcgaccgctggatggtgcgaagtgggcgctctacgcgaggctgtcggcgcacctgccgtcgggtggaatggtggaggagctcggccggtggctccgcgagaggcgcccgctctcggaggagcaggtcctcttctgcgtccgcaggttccgcaagttcaagcagaacaagcacgccctccagttgatggactggatggaagctcgtggagtgaacttggagctcaagcatcatgctttgcggcttgaccttgttagcaaactgaatggtatacatgctgcagaagagtacttcgggagccttccagatattttcaggtcaaagcaaacttattccactctgcttaactgctatgctgagcaccggatggcagagaaaggcctagaactctatgaaaatatgaaagcgatgaacattgtttcagatAtattggtgtacaacaatttgatgtgcttatacctgaagacagatcaaccagagaaaatccccactacagttgtaaaaatgcaagaaagtggtatacaaccaaacaagttttcatactttgtgctaacagaaagctacattatgatgaatgacatagagtccgctgagaaggtcctgaaagaattgcaggaggtaaattcagttccttggtccttgtatgctacacttgctaacggttataataagctgcagcagtttgacaaggcagaattcacccttaagaaagctgaggaagttctggacaagcatgacgttttctcttggcattgtcttctctcccactatgccaattccggcaacttgtccgaggtcaagagaatctgggagtctttaaagtctgcattcaagaaatgcacaaatagaagctatctagtgatgcttaaagctctgaaaaagttggatgattttgacaccctgcagcaaatctttcaggaatgggaatcaagccatgagcactatgacatgaaaataccaaatattatcatccaagcttaccttgataagggcatggtagacaaagctgaggctatgcgtcagacaaccatggctcaggatcattccaactacagaacattttgcatattcgcaaaattctatttggagaaatctaaaatgaatgaggcactgcaggtctggaaagatgcaaagaaaatggtgaaggggcaggattgggtgccagaaaagcttgtgaacagatatctgaagcactttgaggattcaaaggatgtggatgggatggagacgttctgtgaatgcctgaagaatctcggtcgccttgatgctgaagcctatgaagccttgatccggacctatatatctgtaggtagaacaaatccatccatccctcagcgcatggaagttgacaggggcctgacagttgaggtggacgattag
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| Protein seq | MLRAAATAALRRLSQSQAPRRQARGLQYASPERRPLDGAKWALYARLSAHLPSGGMVEELGRWLRERRPLSEEQVLFCVRRFRKFKQNKHALQLMDWMEARGVNLELKHHALRLDLVSKLNGIHAAEEYFGSLPDIFRSKQTYSTLLNCYAEHRMAEKGLELYENMKAMNIVSDILVYNNLMCLYLKTDQPEKIPTTVVKMQESGIQPNKFSYFVLTESYIMMNDIESAEKVLKELQEVNSVPWSLYATLANGYNKLQQFDKAEFTLKKAEEVLDKHDVFSWHCLLSHYANSGNLSEVKRIWESLKSAFKKCTNRSYLVMLKALKKLDDFDTLQQIFQEWESSHEHYDMKIPNIIIQAYLDKGMVDKAEAMRQTTMAQDHSNYRTFCIFAKFYLEKSKMNEALQVWKDAKKMVKGQDWVPEKLVNRYLKHFEDSKDVDGMETFCECLKNLGRLDAEAYEALIRTYISVGRTNPSIPQRMEVDRGLTVEVDD |
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| Function | Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [UniProtKB/Swiss-Prot:Q93WC5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0013220 | OsLaMu_01g0013220.01 | Chr01 | 10999979 | 11004733 | - | NAM | ||
| CDS seq | atgctgcgcgcggcggccacggcggcgctccggcgcctctcacagtcacaggccccgaggagacaagcgcgcggtctccagtacgcgagcccggagcggcgaccgctggatggtgcgaagtgggcgctctacgcgaggctgtcggcgcacctgccgtcgggtggaatggtggaggagctcggccggtggctccgcgagaggcgcccgctctcggaggagcaggtcctcttctgcgtccgcaggttccgcaagttcaagcagaacaagcacgccctccagttgatggactggatggaagctcgtggagtgaacttggagctcaagcatcatgctttgcggcttgaccttgttagcaaactgaatggtatacatgctgcagaagagtacttcgggagccttccagatattttcaggtcaaagcaaacttattccactctgcttaactgctatgctgagcaccggatggcagagaaaggcctagaactctatgaaaatatgaaagcgatgaacattgtttcagatAtattggtgtacaacaatttgatgtgcttatacctgaagacagatcaaccagagaaaatccccactacagttgtaaaaatgcaagaaagtggtatacaaccaaacaagttttcatactttgtgctaacagaaagctacattatgatgaatgacatagagtccgctgagaaggtcctgaaagaattgcaggaggtaaattcagttccttggtccttgtatgctacacttgctaacggttataataagctgcagcagtttgacaaggcagaattcacccttaagaaagctgaggaagttctggacaagcatgacgttttctcttggcattgtcttctctcccactatgccaattccggcaacttgtccgaggtcaagagaatctgggagtctttaaagtctgcattcaagaaatgcacaaatagaagctatctagtgatgcttaaagctctgaaaaagttggatgattttgacaccctgcagcaaatctttcaggaatgggaatcaagccatgagcactatgacatgaaaataccaaatattatcatccaagcttaccttgataagggcatggtagacaaagctgaggctatgcgtcagacaaccatggctcaggatcattccaactacagaacattttgcatattcgcaaaattctatttggagaaatctaaaatgaatgaggcactgcaggtctggaaagatgcaaagaaaatggtgaaggggcaggattgggtgccagaaaagcttgtgaacagatatctgaagcactttgaggattcaaaggatgtggatgggatggagacgttctgtgaatgcctgaagaatctcggtcgccttgatgctgaagcctatgaagccttgatccggacctatatatctgtaggtagaacaaatccatccatccctcagcgcatggaagttgacaggggcctgacagttgaggtggacgattag
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| Protein seq | MLRAAATAALRRLSQSQAPRRQARGLQYASPERRPLDGAKWALYARLSAHLPSGGMVEELGRWLRERRPLSEEQVLFCVRRFRKFKQNKHALQLMDWMEARGVNLELKHHALRLDLVSKLNGIHAAEEYFGSLPDIFRSKQTYSTLLNCYAEHRMAEKGLELYENMKAMNIVSDILVYNNLMCLYLKTDQPEKIPTTVVKMQESGIQPNKFSYFVLTESYIMMNDIESAEKVLKELQEVNSVPWSLYATLANGYNKLQQFDKAEFTLKKAEEVLDKHDVFSWHCLLSHYANSGNLSEVKRIWESLKSAFKKCTNRSYLVMLKALKKLDDFDTLQQIFQEWESSHEHYDMKIPNIIIQAYLDKGMVDKAEAMRQTTMAQDHSNYRTFCIFAKFYLEKSKMNEALQVWKDAKKMVKGQDWVPEKLVNRYLKHFEDSKDVDGMETFCECLKNLGRLDAEAYEALIRTYISVGRTNPSIPQRMEVDRGLTVEVDD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.077364 | 0.914687 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0301700 | RBH | 0.335558 | 0.218307 | 0.901364 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19548 | RBH | 0.179148 | 0.227830 | 0.185865 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0301700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013850 | RBH | 0.000000 | 2.933087 | 2.688399 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013610 | RBH | 0.000000 | 0.000000 | 0.585845 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013860 | RBH | 0.952252 | 0.0 | 0.653232 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0013340 | RBH | 0.0 | 0.155535 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013460 | RBH | 0.0 | 2.160072 | 0.076573 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0185100 | RBH | 1.1346625 | 1.610685 | 2.0927595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013380 | RBH | 0.0 | 0.105383 | 0.067004 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0183300 | RBH | 1.1148765 | 1.1534995 | 9.2855725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013370 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013440 | RBH | 0.120317 | 1.992765 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013430 | RBH | 1.203521 | 8.081902 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013540 | RBH | 0.020778 | 0.372701 | 0.151853 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0013170 | SBH | 0.319465 | 3.213094 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013540 | RBH | 0.310258 | 0.586692 | 0.212690 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0013310 | RBH | 0.844416 | 0.0 | 1.640924 |
