Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0296000 | OGI:01032840 | 5/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:10819457-10822413 | ||||||||
| Gene Symbol | RLCK30, OsRLCK30 | ||||||||||
| DNA seq | GATAGCAATTCTTGTAAAACAACACACCTATTAGCTCCCTTCCTTCCCACATCAACAAAGGCATAAGATGTAGAATACCTGTGTAGTTCCCTTTATCCTCGGGAACATTCCACAAGTAGAAAATGAATACAAAGGTCAAGGTTCAAAGAAGGCAGAACTCCATGATGTCAGCATGCAGATAATCAAGATCAACCGCCCTAGAAAACTTGGAGAACAAATGAATTGCGGATGGCATCGTCGGACGAGTTGATGGATTGGGGTGAAGGCACTGTATAGCAACCGTGATCAATCCAAATATCTCGCTTGCAACTTCACCTGCTGGAGGCGGGAGTCTGGTGTCCAACAAATCCTTCATCGGTGTGCTTTTCTTGCTAGGGCATGAGATCGACGAAACAAAGTCTCCAGGGTGAGATCCCATCAACAGCTCAAGAACTACCACCCCGAAGCTATAAACGTCACATTTCTCTGTCACCTTCGTAGTGTATGCCAGCTCTGAAGTATCAGGAGTTCAGTCAGATTAAAATGTACTAAATATTAATTTATGTTAATATTGTGGTAACTTCTTCATGCATATTAAGTATAGCGTAGAGCATATTTTTTAGTAATATAATGCAGCTTCATGCAACAAGAAAAATACATAAGATAAGAAAAATAATAATCAAAACAGTAGGTTCAACATAATAAATTTTGTTTACCTGGTGCAAGATATCCTTTTGTACCAGCGAGCCTTGTGTGTCCTGATCCATCAGCATCCAGTATTTTAGCTATCCCAAAGTCTGATAAACAAGCTCTGAACTCCAGATCTAGCAGAATGTTTTTGGTTGTTACATCTCGATGGACTATAGGATCTGAACAGTCGTGATGCAAGTAAGATAGGGCATGAGCAACATCCTGAGCAATACATAACCTGCGCTTCCAATCCAACTCGCTTGCACTTCTGTAGGACTTGAGAGCTGTCAACAAGTTTCCTCCTTTCATATACTTGTAGACAATAAACTTATCTCGTGCTGTACAGCAGTAGCCAAAGACTTTTACAATGTTCTTGTGGCGTATTTGCATTGTGGCCTCTATTTCACGATAGAACATTTGCTCGTTTATCAAACGGCCATTCTCTGTTGCATTTATCTTCTTGACTGCAAAATTTTTACCATTTGATAATTTAGCTACATAGACAGACACATAACCACCTGCTCCAATGCAATATTTTTCACTAAAGTTCTCCGTCGCTTCAATAATTTGCTCGTATGCATTTCCACCATCAAAGTTTAAGACAGAGAACATGTTTTCCTGCTGCAAATCTCCTGCGTCGTGTATCTTGTACTTCTTTCTTCTGCATATTCTGCACAGGCTTATAACTAGAACTGCAAGAACAACAAACAGAGTAAGATAAATTTCAGAAAACTATAAGTTCTAATGCAAAAGGCAATCAGTGAACCACACATTCATAAGAAACAGTTTCACAAACCCACAGTTTTAGTTGTTAAGAAAACCACACATTTGCACAACAAATTATGAGGGAACACATATGCAACATGATGAAGATATGAAGTATATCATATACCAAAGTATATCATATATGAAGTCATCCACACCTGCAGCAGCCAAGACAAAGAGTAACACAATGAGCCATGGCAAATACATGTTGGGGATTGTGAGACTGAATCGAGAAGACACGGAAACTTGAAGGATGAGTTTTGTGGTAGGTTGCGAGGAGGAGAGCCAAAGAGAATGAGATATATGCATGTAAGGGACTTCTGACCAAAGAACGAACAGCGACACAGTCACTGGATGCTTTGGTATTTGATTCCTGTAACGTGTGAGCAGTTTCTGGATCTTGTATGCGTAGCTAGCACCCTAATACTAGTCCTGGGTTTAGCATGTATAACTATCAATTAACTAGACTAAAGTACAACAAGATGGGTTAAACAATTATAGAGTATGTAGTTGGTTTTCCTACTGGAAATTGTATGGTGATATTTGGTTGATGAGCAAGCTGGCAATCTAGTGTCAACTGTCAACGTGCCGTGAAACTATGATAGTTATATTTGGACTCTTGACTTTGAGCGTGTTTGGTTAAAAGCCTCTGACCGAGGAATTAAAAATGAGCTAAACAAACAGAAGAAGTCCCTCCAAAGTTCATTAAAAAATTGAGGAAACCTTCCTAAGTCCATGTGCACAAAATATGCAATAAACTTATTATTATCGCCCGGGTTTCTGCTTAGTTCCTCTGACCGAGGAATTAAAATTGAGCTAAACAAACTGAAGAAGTCCCTCCAAAGTTCATTAAAAAAATTGAGGAAACCTTCCTAAGTCCATGTGCAGAAAATATGCAATAAACTTATTACTATCGCCCGGGTTTCTGCTTAGTTCCGTATGCTTCAATCTAAGCTAGGATACGGATCATGTGTTGGTTGCCTTGAGGAACTAACAAAGAATCGGTCATCTCACTTGCAGCACATTACTCAAAGGTCAACAACGCTACAAACACACTAAACGTATGCATACCATTTCTTCATCATTTGGTGTGTGCGGGATGGCGGTTCTCATTTTCTCAAGTGATAGAATCCAATACCCAAAAACATTGCTAAGAACTCCAAAGTAAATGATTAGAGATCTAGGAAGCAGAGAATTCCTGTAAAGAAAACGGAAAAAAAGTAAATTGTACATGTACACGAGAAACTAGAAGCTGGCTCCATGGAAGCATTTCATCGAGCAACTTGCATGCAGCGAGTTGAGCTCTTCTCACCTGCTTGCCGCGGCGTGGTTGCCGCCGGGAAAAAGCGGAGATCTGCGTGGGTTTGGAGAAATATGCGACGCGCTGCAGCTGCTGCGCACGGGCGGCAACGGGAGGAGCGAGGAGGCACCGGACGCGGCAGCGCCGCCGCCTCCGCAGCCTCGATGACTCCATTTTCCCTGGCGGCGCCGCACCGACGACGACGAGAGGAAGGGGTCAAGGG
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| CDS seq | ATGTTCTCTGTCTTAAACTTTGATGGTGGAAATGCATACGAGCAAATTATTGAAGCGACGGAGAACTTTAGTGAAAAATATTGCATTGGAGCAGGTGGTTATGTGTCTGTCTATGTAGCTAAATTATCAAATGGTAAAAATTTTGCAGTCAAGAAGATAAATGCAACAGAGAATGGCCGTTTGATAAACGAGCAAATGTTCTATCGTGAAATAGAGGCCACAATGCAAATACGCCACAAGAACATTGTAAAAGTCTTTGGCTACTGCTGTACAGCACGAGATAAGTTTATTGTCTACAAGTATATGAAAGGAGGAAACTTGTTGACAGCTCTCAAGTCCTACAGAAGTGCAAGCGAGTTGGATTGGAAGCGCAGGTTATGTATTGCTCAGGATGTTGCTCATGCCCTATCTTACTTGCATCACGACTGTTCAGATCCTATAGTCCATCGAGATGTAACAACCAAAAACATTCTGCTAGATCTGGAGTTCAGAGCTTGTTTATCAGACTTTGGGATAGCTAAAATACTGGATGCTGATGGATCAGGACACACAAGGCTCGCTGGTACAAAAGGATATCTTGCACCAGAGCTGGCATACACTACGAAGGTGACAGAGAAATGTGACGTTTATAGCTTCGGGGTGGTAGTTCTTGAGCTGTTGATGGGATCTCACCCTGGAGACTTTGTTTCGTCGATCTCATGCCCTAGCAAGAAAAGCACACCGATGAAGGATTTGTTGGACACCAGACTCCCGCCTCCAGCAGGTGAAGTTGCAAGCGAGATATTTGGATTGATCACGGTTGCTATACAGTGCCTTCACCCCAATCCATCAACTCGTCCGACGATGCCATCCGCAATTCATTTGTTCTCCAAGTTTTCTAGGGCGGTTGATCTTGATTATCTGCATGCTGACATCATGGAGTTCTGCCTTCTTTGA
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| Protein seq | MFSVLNFDGGNAYEQIIEATENFSEKYCIGAGGYVSVYVAKLSNGKNFAVKKINATENGRLINEQMFYREIEATMQIRHKNIVKVFGYCCTARDKFIVYKYMKGGNLLTALKSYRSASELDWKRRLCIAQDVAHALSYLHHDCSDPIVHRDVTTKNILLDLEFRACLSDFGIAKILDADGSGHTRLAGTKGYLAPELAYTTKVTEKCDVYSFGVVVLELLMGSHPGDFVSSISCPSKKSTPMKDLLDTRLPPPAGEVASEIFGLITVAIQCLHPNPSTRPTMPSAIHLFSKFSRAVDLDYLHADIMEFCLL |
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| Function | MDIS1-interacting receptor like kinase 2 [UniProtKB/Swiss-Prot:Q8VZG8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0296000 | OsNip_01t0296000-01 | Chr01 | 10819457 | 10822413 | - | RAP2018-11-26 | ||
| CDS seq | ATGTTCTCTGTCTTAAACTTTGATGGTGGAAATGCATACGAGCAAATTATTGAAGCGACGGAGAACTTTAGTGAAAAATATTGCATTGGAGCAGGTGGTTATGTGTCTGTCTATGTAGCTAAATTATCAAATGGTAAAAATTTTGCAGTCAAGAAGATAAATGCAACAGAGAATGGCCGTTTGATAAACGAGCAAATGTTCTATCGTGAAATAGAGGCCACAATGCAAATACGCCACAAGAACATTGTAAAAGTCTTTGGCTACTGCTGTACAGCACGAGATAAGTTTATTGTCTACAAGTATATGAAAGGAGGAAACTTGTTGACAGCTCTCAAGTCCTACAGAAGTGCAAGCGAGTTGGATTGGAAGCGCAGGTTATGTATTGCTCAGGATGTTGCTCATGCCCTATCTTACTTGCATCACGACTGTTCAGATCCTATAGTCCATCGAGATGTAACAACCAAAAACATTCTGCTAGATCTGGAGTTCAGAGCTTGTTTATCAGACTTTGGGATAGCTAAAATACTGGATGCTGATGGATCAGGACACACAAGGCTCGCTGGTACAAAAGGATATCTTGCACCAGAGCTGGCATACACTACGAAGGTGACAGAGAAATGTGACGTTTATAGCTTCGGGGTGGTAGTTCTTGAGCTGTTGATGGGATCTCACCCTGGAGACTTTGTTTCGTCGATCTCATGCCCTAGCAAGAAAAGCACACCGATGAAGGATTTGTTGGACACCAGACTCCCGCCTCCAGCAGGTGAAGTTGCAAGCGAGATATTTGGATTGATCACGGTTGCTATACAGTGCCTTCACCCCAATCCATCAACTCGTCCGACGATGCCATCCGCAATTCATTTGTTCTCCAAGTTTTCTAGGGCGGTTGATCTTGATTATCTGCATGCTGACATCATGGAGTTCTGCCTTCTTTGA
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| Protein seq | MFSVLNFDGGNAYEQIIEATENFSEKYCIGAGGYVSVYVAKLSNGKNFAVKKINATENGRLINEQMFYREIEATMQIRHKNIVKVFGYCCTARDKFIVYKYMKGGNLLTALKSYRSASELDWKRRLCIAQDVAHALSYLHHDCSDPIVHRDVTTKNILLDLEFRACLSDFGIAKILDADGSGHTRLAGTKGYLAPELAYTTKVTEKCDVYSFGVVVLELLMGSHPGDFVSSISCPSKKSTPMKDLLDTRLPPPAGEVASEIFGLITVAIQCLHPNPSTRPTMPSAIHLFSKFSRAVDLDYLHADIMEFCLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.266915 | 0.0 | 0.673085 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0135800 | RBH | 5.548540 | 6.965021 | 20.679474 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19160 | RBH | 0.273545 | 0.0 | 0.148065 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0296000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028170 | SBH | 0.0 | 14.864129 | 5.154924 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0037480 | SBH | 0.034916 | 1.535580 | 0.504719 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0010020 | SBH | 4.130686 | 24.553476 | 10.266077 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0009540 | SBH | 0.359428 | 0.552816 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0009560 | SBH | 8.419856 | 32.001350 | 23.125412 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0179600 | RBH | 0.261496 | 1.387034 | 1.2990615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013020 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0126200 | SBH | 23.7048845 | 24.334396 | 46.903557 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023200 | SBH | 0.0 | 0.154690 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027010 | SBH | 0.0 | 3.165168 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0009560 | SBH | 20.185471 | 30.782627 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0009680 | SBH | 1.805162 | 2.556382 | 1.920822 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009490 | SBH | 0.601683 | 43.254116 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G009640 | SBH | 0.966132 | 12.982623 | 4.089199 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009520 | SBH | 4.061661 | 34.690876 | 4.488633 |
