Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0009680 | OGI:01024170 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:7814151-7817954 | ||||||||
| Gene Symbol | RLCK30, OsRLCK30 | ||||||||||
| DNA seq | gcttccgctgcttctcctctccataagagcacccaccaactcagcctctcgccctctcctcccatcgccgccgccaatgccggcctccacggcctcgccaccgccgcacctcgtctgaacccccgtcttgctgccgccggaaaccgcgtcgagaagttaaccatggggtctggctcactcctcctctccctcttgctggtgctcgtcgtcgtcaatgtcggggtggcggtgaaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcgctggcggactggaacgctcgcgacgccacgccctgcagctggacgggcgtctcctgcgacgccggcgtcggcggcggcgccgtgacggggatctccctcgcgggcctcaacctcaccgggtcgttcccggcggcgttgtgccgcctcccgcgcgtcgcgagcatcgacctgagcaacaactacatcggccccaacctgagctccgacgccgtcgcgccgtgcaaggcgctccggcggctcgacctgtcgatgaacgcgctcgtcggcccgctccccgacgcgctcgcggccctcccggagctcgtgtacctcaagctcgacagcaacaacttctccggcccgataccggagtcgttcggccggttcaagaagctcgagtcgctctccctcgtctacaacctgctcggcggcgaggtcccgccgttcctcggcggcgtgtccacgctccgggagctcaacctgtcctacaacccgttcgtggcggggcccgtgcccgccgagctcggcaacctctccgctctgcgcgtgctctggctcgccggctgcaacctcatcggcgccatcccggcgtctctcggcaggctcggcaacctcacggacctcgacttgtcgacgaacgcgctcaccggctcgataccgccggagattacgcggctgacgagcgtcgtgcagatcgagctgtacaacaactcgctcactgggccgattcccgtggggttcggcaagctcgcggagctccagggcgtggacctcgccatgaacaggctcaacggcgccatcccggatgacttcttcgaggcgccgaagctggagagcgtgcacctgtacgccaactcgctgacggggcccgtgccggagtcggtggcgaaggcggcgtcgctcgtcgagctgcggctgttcgccaaccggctgaacggcacgctgccggccgacctcggcaagaacagccctctggtgtgcgtggacatgtccgacaactccatctccggcgagatcccgccggcgatatgcgaccgcggcgagctcgaggagcttcttatgctcgacaataagctctccggtcgcatccccgacgggctcgggcgttgccggaggctgcggcgggtgcggctgtcgaacaacaggctcgacggcgacgtgcccgccgcggtctggggcctgccgcacatgtcgctgctcgagctcaacgacaaccagctcaccggagtgatctctccggtcatcggcggcgcggccaacctgtccaagctggtgctgtccaataaccggctaactggtagcatcccgccggaaattggctcggcctcgaagctgtacgagctctccgccgacggcaacatgctctccggcccgctccctgggtctcttggcggcctcgaagagctcggccggcttgttctccggaacaactcgttgtcaggtcatctgctccggggaatcaattcttggaagaagcttagtgagctcaacctcgccgacaatggctttaccggagcaattccagcagagctcggcgatttgccggtgctgaactaccttgacctctccggcaaccgtctcaccggtgaggtaccaatgcaattggagaatctgaagctgaaccagttcaatgtctccaataaccagctcagtggcgcgcttccgccacagtatgcgacggcggcatatcgaagcagcttcttgggcaacccggggttatgtggagataatgccggtctatgtgccaattcacagggaggtcctagatcccgcgctggcttcgcctggatgatgcgctcaattttcatatttgcggctgttgttctggttgctggagttgcgtggttctactggaggtaccggagcttcaacaattctaagctaagtgccgaccgttcgaaatggtcattgacatcattccacaagctctcattcagcgagtatgagatcctggattgtcttgatgaggataatgtgattggtagtggcgcatccgggaaagtgtataaggcagtgctcagcaatggtgaggtggttgccgttaagaagctttgggggttaaagaaggggacggatgttgagaatgggggtgaaggatccgcagctgacaacagctttgaggcggaggtgaagactcttggcaagattcgccacaagaacattgtcaagctctggtgtagctgcacgcacaatgacaccaagttgctggtgtacgagtacatgcccaatggtagcctaggagatgtgctacacagcagcaaggctggtttgctggattggtcgacgcggtacaagattgctctggatgcagcggaggggttatcctatcttcaccatgactgcgtccctgcgatcgtccatagggatgtcaagtcgaacaacatcctcttggatgctgaattcggtgcccgtgttgcagactttggggttgccaaagtggtagaagccactgtccggggccccaagtcgatgtcagtgatcgcgggttcatgtggttacattgcacctggtaagtctcactaattgttttagatgtaagtttcagttagtcctttagaattgtgaatctgatgtacttgttttgtgcagagtatgcatacacactccgcgtcaatgagaagagcgacatatacagcttcggagtggttcttcttgagctcgtgacagggaaaccgccagtcgatccagagttcggcgagaaggacctggtgaagtgggtgtgcagcacaattgatcagaagggggtagaacatgtcctcgacagcaaactcgacatgaccttcaaggatgagatcaacagggtgctgaacatcgccctcctctgctcgagctccctaccgatcaaccgcccggcgatgcgcagggtggtcaagatgctgcaagaagtgcgcgccgaggccacaaggccaaggctggagaaggacggcaagctgtcgccatactactacgaggacacctccgatcaagggagcagcgtgtaaaggtaaaaacccccaaaagagaagaagatgacaataggtcaagagctgcttccatgaatcttctcccatggcttgtagagctgtagctaggtaggaaagctgcaatcataacccagtcgtgtccaaaattctatagttgctgattttgagcgctgaatttgctcgccgccgacgccggcctccgacagcacggttaactctggagctgtgctctccagtccggcaatggaggacagtaagctggtgggtgcccggtgttcttggttgtccttgctgtatgtggaccgtgccattgatgccggtagggcagatcgctcgtctgctgtccatcgagagaagaaaagtctgtgaacggaatcaaatgtaggtgtgtactgtaattagtactgctactttgccttttctcctgagataagctaggagtattgttcaaggctcatggtgatggcccacggggtggttggatcaagtatttcctgctcttcaactcagcaggagagatggaaatactaatgcaaacgagtgaatgaatgaatctgacctctttatttcg
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| CDS seq | atggggtctggctcactcctcctctccctcttgctggtgctcgtcgtcgtcaatgtcggggtggcggtgaaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcgctggcggactggaacgctcgcgacgccacgccctgcagctggacgggcgtctcctgcgacgccggcgtcggcggcggcgccgtgacggggatctccctcgcgggcctcaacctcaccgggtcgttcccggcggcgttgtgccgcctcccgcgcgtcgcgagcatcgacctgagcaacaactacatcggccccaacctgagctccgacgccgtcgcgccgtgcaaggcgctccggcggctcgacctgtcgatgaacgcgctcgtcggcccgctccccgacgcgctcgcggccctcccggagctcgtgtacctcaagctcgacagcaacaacttctccggcccgataccggagtcgttcggccggttcaagaagctcgagtcgctctccctcgtctacaacctgctcggcggcgaggtcccgccgttcctcggcggcgtgtccacgctccgggagctcaacctgtcctacaacccgttcgtggcggggcccgtgcccgccgagctcggcaacctctccgctctgcgcgtgctctggctcgccggctgcaacctcatcggcgccatcccggcgtctctcggcaggctcggcaacctcacggacctcgacttgtcgacgaacgcgctcaccggctcgataccgccggagattacgcggctgacgagcgtcgtgcagatcgagctgtacaacaactcgctcactgggccgattcccgtggggttcggcaagctcgcggagctccagggcgtggacctcgccatgaacaggctcaacggcgccatcccggatgacttcttcgaggcgccgaagctggagagcgtgcacctgtacgccaactcgctgacggggcccgtgccggagtcggtggcgaaggcggcgtcgctcgtcgagctgcggctgttcgccaaccggctgaacggcacgctgccggccgacctcggcaagaacagccctctggtgtgcgtggacatgtccgacaactccatctccggcgagatcccgccggcgatatgcgaccgcggcgagctcgaggagcttcttatgctcgacaataagctctccggtcgcatccccgacgggctcgggcgttgccggaggctgcggcgggtgcggctgtcgaacaacaggctcgacggcgacgtgcccgccgcggtctggggcctgccgcacatgtcgctgctcgagctcaacgacaaccagctcaccggagtgatctctccggtcatcggcggcgcggccaacctgtccaagctggtgctgtccaataaccggctaactggtagcatcccgccggaaattggctcggcctcgaagctgtacgagctctccgccgacggcaacatgctctccggcccgctccctgggtctcttggcggcctcgaagagctcggccggcttgttctccggaacaactcgttgtcagttgcgtggttctactggaggtaccggagcttcaacaattctaagctaagtgccgaccgttcgaaatggtcattgacatcattccacaagctctcattcagcgagtatgagatcctggattgtcttgatgaggataatgtgattggtagtggcgcatccgggaaagtgtataaggcagtgctcagcaatggtgaggtggttgccgttaagaagctttgggggttaaagaaggggacggatgttgagaatgggggtgaaggatccgcagctgacaacagctttgaggcggaggtgaagactcttggcaagattcgccacaagaacattgtcaagctctggtgtagctgcacgcacaatgacaccaagttgctggtgtacgagtacatgcccaatggtagcctaggagatgtgctacacagcagcaaggctggtttgctggattggtcgacgcggtacaagattgctctggatgcagcggaggggttatcctatcttcaccatgactgcgtccctgcgatcgtccatagggatgtcaagtcgaacaacatcctcttggatgctgaattcggtgcccgtgttgcagactttggggttgccaaagtggtagaagccactgtccggggccccaagtcgatgtcagtgatcgcgggttcatgtggttacattgcacctgagtatgcatacacactccgcgtcaatgagaagagcgacatatacagcttcggagtggttcttcttgagctcgtgacagggaaaccgccagtcgatccagagttcggcgagaaggacctggtgaagtgggtgtgcagcacaattgatcagaagggggtagaacatgtcctcgacagcaaactcgacatgaccttcaaggatgagatcaacagggtgctgaacatcgccctcctctgctcgagctccctaccgatcaaccgcccggcgatgcgcagggtggtcaagatgctgcaagaagtgcgcgccgaggccacaaggccaaggctggagaaggacggcaagctgtcgccatactactacgaggacacctccgatcaagggagcagcgtgtaa
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| Protein seq | MGSGSLLLSLLLVLVVVNVGVAVNQDGLSLLDARRALAAPDGALADWNARDATPCSWTGVSCDAGVGGGAVTGISLAGLNLTGSFPAALCRLPRVASIDLSNNYIGPNLSSDAVAPCKALRRLDLSMNALVGPLPDALAALPELVYLKLDSNNFSGPIPESFGRFKKLESLSLVYNLLGGEVPPFLGGVSTLRELNLSYNPFVAGPVPAELGNLSALRVLWLAGCNLIGAIPASLGRLGNLTDLDLSTNALTGSIPPEITRLTSVVQIELYNNSLTGPIPVGFGKLAELQGVDLAMNRLNGAIPDDFFEAPKLESVHLYANSLTGPVPESVAKAASLVELRLFANRLNGTLPADLGKNSPLVCVDMSDNSISGEIPPAICDRGELEELLMLDNKLSGRIPDGLGRCRRLRRVRLSNNRLDGDVPAAVWGLPHMSLLELNDNQLTGVISPVIGGAANLSKLVLSNNRLTGSIPPEIGSASKLYELSADGNMLSGPLPGSLGGLEELGRLVLRNNSLSVAWFYWRYRSFNNSKLSADRSKWSLTSFHKLSFSEYEILDCLDEDNVIGSGASGKVYKAVLSNGEVVAVKKLWGLKKGTDVENGGEGSAADNSFEAEVKTLGKIRHKNIVKLWCSCTHNDTKLLVYEYMPNGSLGDVLHSSKAGLLDWSTRYKIALDAAEGLSYLHHDCVPAIVHRDVKSNNILLDAEFGARVADFGVAKVVEATVRGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVLLELVTGKPPVDPEFGEKDLVKWVCSTIDQKGVEHVLDSKLDMTFKDEINRVLNIALLCSSSLPINRPAMRRVVKMLQEVRAEATRPRLEKDGKLSPYYYEDTSDQGSSV |
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| Function | Receptor-like protein kinase HSL1 [UniProtKB/Swiss-Prot:Q9SGP2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0009680 | OsLiXu_01g0009680.01 | Chr01 | 7814151 | 7817954 | + | NAM | ||
| CDS seq | atggggtctggctcactcctcctctccctcttgctggtgctcgtcgtcgtcaatgtcggggtggcggtgaaccaggacgggctgtccctgctcgacgcgaggcgcgcgctcgccgccccggatggcgcgctggcggactggaacgctcgcgacgccacgccctgcagctggacgggcgtctcctgcgacgccggcgtcggcggcggcgccgtgacggggatctccctcgcgggcctcaacctcaccgggtcgttcccggcggcgttgtgccgcctcccgcgcgtcgcgagcatcgacctgagcaacaactacatcggccccaacctgagctccgacgccgtcgcgccgtgcaaggcgctccggcggctcgacctgtcgatgaacgcgctcgtcggcccgctccccgacgcgctcgcggccctcccggagctcgtgtacctcaagctcgacagcaacaacttctccggcccgataccggagtcgttcggccggttcaagaagctcgagtcgctctccctcgtctacaacctgctcggcggcgaggtcccgccgttcctcggcggcgtgtccacgctccgggagctcaacctgtcctacaacccgttcgtggcggggcccgtgcccgccgagctcggcaacctctccgctctgcgcgtgctctggctcgccggctgcaacctcatcggcgccatcccggcgtctctcggcaggctcggcaacctcacggacctcgacttgtcgacgaacgcgctcaccggctcgataccgccggagattacgcggctgacgagcgtcgtgcagatcgagctgtacaacaactcgctcactgggccgattcccgtggggttcggcaagctcgcggagctccagggcgtggacctcgccatgaacaggctcaacggcgccatcccggatgacttcttcgaggcgccgaagctggagagcgtgcacctgtacgccaactcgctgacggggcccgtgccggagtcggtggcgaaggcggcgtcgctcgtcgagctgcggctgttcgccaaccggctgaacggcacgctgccggccgacctcggcaagaacagccctctggtgtgcgtggacatgtccgacaactccatctccggcgagatcccgccggcgatatgcgaccgcggcgagctcgaggagcttcttatgctcgacaataagctctccggtcgcatccccgacgggctcgggcgttgccggaggctgcggcgggtgcggctgtcgaacaacaggctcgacggcgacgtgcccgccgcggtctggggcctgccgcacatgtcgctgctcgagctcaacgacaaccagctcaccggagtgatctctccggtcatcggcggcgcggccaacctgtccaagctggtgctgtccaataaccggctaactggtagcatcccgccggaaattggctcggcctcgaagctgtacgagctctccgccgacggcaacatgctctccggcccgctccctgggtctcttggcggcctcgaagagctcggccggcttgttctccggaacaactcgttgtcagttgcgtggttctactggaggtaccggagcttcaacaattctaagctaagtgccgaccgttcgaaatggtcattgacatcattccacaagctctcattcagcgagtatgagatcctggattgtcttgatgaggataatgtgattggtagtggcgcatccgggaaagtgtataaggcagtgctcagcaatggtgaggtggttgccgttaagaagctttgggggttaaagaaggggacggatgttgagaatgggggtgaaggatccgcagctgacaacagctttgaggcggaggtgaagactcttggcaagattcgccacaagaacattgtcaagctctggtgtagctgcacgcacaatgacaccaagttgctggtgtacgagtacatgcccaatggtagcctaggagatgtgctacacagcagcaaggctggtttgctggattggtcgacgcggtacaagattgctctggatgcagcggaggggttatcctatcttcaccatgactgcgtccctgcgatcgtccatagggatgtcaagtcgaacaacatcctcttggatgctgaattcggtgcccgtgttgcagactttggggttgccaaagtggtagaagccactgtccggggccccaagtcgatgtcagtgatcgcgggttcatgtggttacattgcacctgagtatgcatacacactccgcgtcaatgagaagagcgacatatacagcttcggagtggttcttcttgagctcgtgacagggaaaccgccagtcgatccagagttcggcgagaaggacctggtgaagtgggtgtgcagcacaattgatcagaagggggtagaacatgtcctcgacagcaaactcgacatgaccttcaaggatgagatcaacagggtgctgaacatcgccctcctctgctcgagctccctaccgatcaaccgcccggcgatgcgcagggtggtcaagatgctgcaagaagtgcgcgccgaggccacaaggccaaggctggagaaggacggcaagctgtcgccatactactacgaggacacctccgatcaagggagcagcgtgtaa
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| Protein seq | MGSGSLLLSLLLVLVVVNVGVAVNQDGLSLLDARRALAAPDGALADWNARDATPCSWTGVSCDAGVGGGAVTGISLAGLNLTGSFPAALCRLPRVASIDLSNNYIGPNLSSDAVAPCKALRRLDLSMNALVGPLPDALAALPELVYLKLDSNNFSGPIPESFGRFKKLESLSLVYNLLGGEVPPFLGGVSTLRELNLSYNPFVAGPVPAELGNLSALRVLWLAGCNLIGAIPASLGRLGNLTDLDLSTNALTGSIPPEITRLTSVVQIELYNNSLTGPIPVGFGKLAELQGVDLAMNRLNGAIPDDFFEAPKLESVHLYANSLTGPVPESVAKAASLVELRLFANRLNGTLPADLGKNSPLVCVDMSDNSISGEIPPAICDRGELEELLMLDNKLSGRIPDGLGRCRRLRRVRLSNNRLDGDVPAAVWGLPHMSLLELNDNQLTGVISPVIGGAANLSKLVLSNNRLTGSIPPEIGSASKLYELSADGNMLSGPLPGSLGGLEELGRLVLRNNSLSVAWFYWRYRSFNNSKLSADRSKWSLTSFHKLSFSEYEILDCLDEDNVIGSGASGKVYKAVLSNGEVVAVKKLWGLKKGTDVENGGEGSAADNSFEAEVKTLGKIRHKNIVKLWCSCTHNDTKLLVYEYMPNGSLGDVLHSSKAGLLDWSTRYKIALDAAEGLSYLHHDCVPAIVHRDVKSNNILLDAEFGARVADFGVAKVVEATVRGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVLLELVTGKPPVDPEFGEKDLVKWVCSTIDQKGVEHVLDSKLDMTFKDEINRVLNIALLCSSSLPINRPAMRRVVKMLQEVRAEATRPRLEKDGKLSPYYYEDTSDQGSSV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.805162 | 2.556382 | 1.920822 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0239700 | RBH | 3.653814 | 3.919720 | 6.439955 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g13800 | RBH | 2.453229 | 2.473443 | 1.627727 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0239700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0010040 | RBH | 1.896987 | 18.093508 | 6.711832 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0009680 | RBH | 0.983367 | 7.279926 | 2.366024 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0010020 | RBH | 4.130686 | 24.553476 | 10.266077 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0009540 | RBH | 0.359428 | 0.552816 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0009560 | RBH | 8.419856 | 32.001350 | 23.125412 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0126700 | RBH | 25.7036295 | 29.6524575 | 43.124731 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0009560 | RBH | 0.613773 | 2.023292 | 1.118787 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0126200 | RBH | 23.7048845 | 24.334396 | 46.903557 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0007730 | RBH | 0.631909 | 0.453785 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0009590 | RBH | 1.412951 | 24.118826 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0009560 | RBH | 20.185471 | 30.782627 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | SBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009490 | RBH | 0.601683 | 43.254116 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G009640 | RBH | 0.966132 | 12.982623 | 4.089199 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009520 | RBH | 4.061661 | 34.690876 | 4.488633 |
