Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0150950 | OGI:01009200 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:2753663-2755342 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACGCCCGCGTCACTCGCCCTAGGGCGACACGGGCGGCGACACCGCGCGCGCCGCCACAAACTTCTCCTCCTCCCCTCCGCCTCGCCGCCGCCCGAGCAGCCGCCGGCAAAGCCGTGCGGCGGCAAGGATGGCGGCGGCGGGGCCTTCTCCCTCTCTCGAGAAGCGCGGCTGGGGCACCGGCGGGACCCGAGCGAAGCGGACGGCGGCGACAGTGTCCGGCGCCATCTGGGCCAAATGCGGCGGATCCGGCTCCGCCGGAGGTGGATCTGGCCCTGTCGCGGCCAGATCGGGAGGGGCATGCCGCTCCTGGCAGGAGGCGGCGTGGGAGGCGGCGACCGCGACCGTTGGTGGGGGGGACGACGGATCCGGCCACTCTGGCGGCAGATCCAGTCCCCCCGGATGGCTGCGGCCGGCAGGCGGAGGTGGCCGACGCCGAGGAGGTTTGCGGCGGAAGGCAGTGGCGACGGCGACCGACGGAGAAGCGAGGGCGGCGACGGCGACCGACGGAGTCGAGAGGGCGGCAACAGCAGCCGACGGAGACGCGTAGGCGGCGGCAGCGGCTGGTCGGCGGGACCGGCGACGGCGTGCATGGCGCGACGCGCGCGAGATCCGGTGATGCTGGAGGCGGGGTGGGAGATGGTGGCAGGGCACGGTGGCGGTGCTGGCGGCGGGGTGGGGGCTGGTGGCGGGGCTGAGTGGTGGCGGCGGTGGAGCTTGGTGGTGATGGCGGCGGCGGAGCCCAAGCTGCGGTGGGCAGCCAACGCCGCGCGACAGCTGGGCGTCTGGCTTCCCCCGGGCAAGATCCGATCCCCTCCACCGGATTTGGGGCGAGAGCATCGTGCTTCGGTGGACGTTCTAGTGCCGCGTCATTTTGGACGGCGGGTGCACTGTGGCGGAGGGGTCAACAGCACGGTGCGGAGGGTGGCATGGCGCCGGTGTAACGGTCTGGTGGTCCGAGGTGACATGGACAACGGATTCGTGGCGGAGCCGGCGGTTACTCTGTCAGGGGGAGCCGCGGTCCTCTCGACGTGCACCTTCCTAGACATATGTCCTCTTGCGACGGCGACTTTGTCGGCAAAAGTTGGCCACGTCGTGCGGGCTAGTGTGGGGGAGAGGGCATCCATTCTTCTCTCTCACCCTCTCCCCATCCAACCCAACTGCGTGGATGGAGCCGGTGTGTGTCGAGGTTCGAGCTTCCCCATGGCGATTGACTGGCGGCGTGGTGCCGGTGCGGTGGCCATGCGTCGAAGGTTTTCGCTGGTGGTGGCTGCGGAGCGTGTAGGAGTTCAGTTCTTGGGAGAGACAAATTTTGGGCGAAAGCTCTGCCTTCGAGCCGGCAACAACGACGCCTGTGGGTGCCGTTTTTTCCTCTTGGGGTGTTGCCGCTTTTCTTGTCTCTCCCAATTACTTTCTTCAGGTGAAAACCTTGTCCTGGCCCTCCGGGACAGGCGACAGCGGCACTTTTGGTGTCGTACCCTTCTTGAAGGTGTCGTCTCGAAGACCTTCAGTTTTGCTCATGCAGTGGGTTTTGTTGTAGACGCGCGGTGTGGTTGTATTTTCTTTTTTTGTCTGTGGTCTTCTAGGACTATAGATTGTATTTTTCTCCTGCTTTATCAATACATGAAACTCGCACTGTCTTGTGTGGCTCGTTTCAAAAACAATAGCCTGGAATTTAAATAA
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| CDS seq | ATGGCGCGACGCGCGCGAGATCCGGTGATGCTGGAGGCGGGGTGGGAGATGGTGGCAGGGCACGGTGGCGGTGCTGGCGGCGGGGTGGGGGCTGGTGGCGGGGCTGAGTGGTGGCGGCGGTGGAGCTTGGTGGTGATGGCGGCGGCGGAGCCCAAGCTGCGGTGGGCAGCCAACGCCGCGCGACAGCTGGGCGTCTGGCTTCCCCCGGGCAAGATCCGATCCCCTCCACCGGATTTGGGGCGAGAGCATCGTGCTTCGGTGGACGTTCTAGTGCCGCGTCATTTTGGACGGCGGGTGCACTGTGGCGGAGGGGTCAACAGCACGGTGCGGAGGGTGGCATGGCGCCGGTGTAACGGTCTGGTGGTCCGAGGTGACATGGACAACGGATTCGTGGCGGAGCCGGCGGTTACTCTGTCAGGGGGAGCCGCGGTCCTCTCGACGTGCACCTTCCTAGACATATGTCCTCTTGCGACGGCGACTTTGTCGGCAAAAGTTGGCCACGTCGTGCGGGCTAGTGTGGGGGAGAGGGCATCCATTCTTCTCTCTCACCCTCTCCCCATCCAACCCAACTGCGTGGATGGAGCCGGTGTGTGTCGAGGTTCGAGCTTCCCCATGGCGATTGACTGGCGGCGTGGTGCCGGTGCGGTGGCCATGCGTCGAAGGTTTTCGCTGGTGGTGGCTGCGGAGCGTGTAGGAGTTCAGTTCTTGGGAGAGACAAATTTTGGGCGAAAGCTCTGCCTTCGAGCCGGCAACAACGACGCCTGTGGGTGCCGTTTTTTCCTCTTGGGGTGTTGCCGCTTTTCTTGTCTCTCCCAATTACTTTCTTCAGGTGAAAACCTTGTCCTGGCCCTCCGGGACAGGCGACAGCGGCACTTTTGGTGTCGTACCCTTCTTGAAGGTGTCGTCTCGAAGACCTTCAGTTTTGCTCATGCAGTGGGTTTTGTTGTAGACGCGCGGTGTGGTTGTATTTTCTTTTTTTGTCTGTGGTCTTCTAGGACTATAGATTGTATTTTTCTCCTGCTTTATCAATACATGAAACTCGCACTGTCTTGTGTGGCTCGTTTCAAAAACAATAGCCTGGAATTTAAATAA
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| Protein seq | MARRARDPVMLEAGWEMVAGHGGGAGGGVGAGGGAEWWRRWSLVVMAAAEPKLRWAANAARQLGVWLPPGKIRSPPPDLGREHRASVDVLVPRHFGRRVHCGGGVNSTVRRVAWRRCNGLVVRGDMDNGFVAEPAVTLSGGAAVLSTCTFLDICPLATATLSAKVGHVVRASVGERASILLSHPLPIQPNCVDGAGVCRGSSFPMAIDWRRGAGAVAMRRRFSLVVAAERVGVQFLGETNFGRKLCLRAGNNDACGCRFFLLGCCRFSCLSQLLSSGENLVLALRDRRQRHFWCRTLLEGVVSKTFSFAHAVGFVVDARCGCIFFFCLWSSRTIDCIFLLLYQYMKLALSCVARFKNNSLEFK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0150950 | OsNip_01t0150950-00 | Chr01 | 2753663 | 2755342 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGCGACGCGCGCGAGATCCGGTGATGCTGGAGGCGGGGTGGGAGATGGTGGCAGGGCACGGTGGCGGTGCTGGCGGCGGGGTGGGGGCTGGTGGCGGGGCTGAGTGGTGGCGGCGGTGGAGCTTGGTGGTGATGGCGGCGGCGGAGCCCAAGCTGCGGTGGGCAGCCAACGCCGCGCGACAGCTGGGCGTCTGGCTTCCCCCGGGCAAGATCCGATCCCCTCCACCGGATTTGGGGCGAGAGCATCGTGCTTCGGTGGACGTTCTAGTGCCGCGTCATTTTGGACGGCGGGTGCACTGTGGCGGAGGGGTCAACAGCACGGTGCGGAGGGTGGCATGGCGCCGGTGTAACGGTCTGGTGGTCCGAGGTGACATGGACAACGGATTCGTGGCGGAGCCGGCGGTTACTCTGTCAGGGGGAGCCGCGGTCCTCTCGACGTGCACCTTCCTAGACATATGTCCTCTTGCGACGGCGACTTTGTCGGCAAAAGTTGGCCACGTCGTGCGGGCTAGTGTGGGGGAGAGGGCATCCATTCTTCTCTCTCACCCTCTCCCCATCCAACCCAACTGCGTGGATGGAGCCGGTGTGTGTCGAGGTTCGAGCTTCCCCATGGCGATTGACTGGCGGCGTGGTGCCGGTGCGGTGGCCATGCGTCGAAGGTTTTCGCTGGTGGTGGCTGCGGAGCGTGTAGGAGTTCAGTTCTTGGGAGAGACAAATTTTGGGCGAAAGCTCTGCCTTCGAGCCGGCAACAACGACGCCTGTGGGTGCCGTTTTTTCCTCTTGGGGTGTTGCCGCTTTTCTTGTCTCTCCCAATTACTTTCTTCAGGTGAAAACCTTGTCCTGGCCCTCCGGGACAGGCGACAGCGGCACTTTTGGTGTCGTACCCTTCTTGAAGGTGTCGTCTCGAAGACCTTCAGTTTTGCTCATGCAGTGGGTTTTGTTGTAGACGCGCGGTGTGGTTGTATTTTCTTTTTTTGTCTGTGGTCTTCTAGGACTATAGATTGTATTTTTCTCCTGCTTTATCAATACATGAAACTCGCACTGTCTTGTGTGGCTCGTTTCAAAAACAATAGCCTGGAATTTAAATAA
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| Protein seq | MARRARDPVMLEAGWEMVAGHGGGAGGGVGAGGGAEWWRRWSLVVMAAAEPKLRWAANAARQLGVWLPPGKIRSPPPDLGREHRASVDVLVPRHFGRRVHCGGGVNSTVRRVAWRRCNGLVVRGDMDNGFVAEPAVTLSGGAAVLSTCTFLDICPLATATLSAKVGHVVRASVGERASILLSHPLPIQPNCVDGAGVCRGSSFPMAIDWRRGAGAVAMRRRFSLVVAAERVGVQFLGETNFGRKLCLRAGNNDACGCRFFLLGCCRFSCLSQLLSSGENLVLALRDRRQRHFWCRTLLEGVVSKTFSFAHAVGFVVDARCGCIFFFCLWSSRTIDCIFLLLYQYMKLALSCVARFKNNSLEFK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.030064 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0606250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05770 | RBH | 0.000000 | 0.0 | 0.235211 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0150950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026790 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003490 | SBH | 0.049562 | 0.000000 | 0.509663 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026680 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0016200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003550 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0047200 | RBH | 0.1375455 | 0 | 0.004684 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003480 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0308000 | RBH | 0.005065 | 0.979375 | 0.02907 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0005450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0016150 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0016210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0005130 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003450 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G015790 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0016090 | RBH | 0.000000 | 0.000000 | 0.000000 |
