Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0005450 | OGI:01009200 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg58:67532-71651 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGGAAGCAGCCTTTCGCTCACATATGTTAATCTCGAGAGCAATGCTCTCACAGGGATCATCCCAGAGTCCATAGGGAATAGTTCTTCCCTTGAAGTACTTGTCCTCACGAGCAATAACCTTACTGGAGAAATTCCAAAGCCTTTGTTCAACTCCTCATCTCTTACTGCTATTTACCTTGATGAGAATAGCTTTGTTGGTTATATACCACCTGTTACAGCCACCTCTCCCCCTTTACAGTATCTTTATTTAGGGGGTAACATGCTATCAGGAACAATACCTTCCTCATTAGGAAATCTTTCATCCCTACTTGATCTAAGTCTTACAGAGAACAATTTAATAGGGAGCATCCCAGATAGTTTAGGCCATATTCCAACATTACGTTTGCTGAGCTTGGATACAAATAACTTAACTGGGCATGTTCCATCATCTATCTTCAACTTGTCATCCCTGAAAATTATATCCATGGTAAACAACTCACTTACTGGGGAATTACCATCATACTTAGGTTACACACTCCCAAATATTGAAGCATTAGCTCTGTCCAATAATAGGTTCAAAGGCTCAATCCCACCTACTCTTCTGAATGCTTCCCACCTGAGTTCGCTTTATTTACGCAACAATAGCCTTACTGGGCTCATTCCCTTCTTCGGATCATTGCCAAATATGGAGAAACTTATGCTGTCATACAACAAGCTAGAAGCAGATGACTGGAGCTTTATGTCTTCACTATCGAATTGCTCCAAATTGACTAAACTATTGATAGATGGAAACAATCTCAAAGGTAAACTGCCTCACTCCATTGGCAATCTTTCTAGTAGTCTCAAGTGGTTGTGGATAAGAGATAACAAAATTTCTGGGCATATACCACCCGAGATAGGCAATCTAAAGGGATTGGAAATGTTGTACATGGATTACAATATTTTGACAGGTAACATACCCTCAGAAATTGGAAATTTGAACAACTTGGTCGTTCTAGCCATGGCCCAAAACAACCTGTCAGGACAAATCCCTGATACAATTGGCAACCTTGTTAAGCTAACTGACCTAAAGTTGGACAGGAATAACTTTAGTGGAGGCATACCTACGACTCTAGAGCATTGTACTCAACTGGAAATACTCAACCTTGCCCACAACTCACTAGATGGAAAACTACCAAATCATATCTTCAAACTTGCTACACTTTCCCAAGAGTTGGACCTGTCACACAATTATTTGTTTGGAGGAATACCAGAGGAAGTTGGAAATCTCATTAATCTGAAAAAACTCAGCATCTCAAACAACAGGATGTCTGGCAACATCCCGTCCACTATGGGCCAGTGTGTTGTTCTGGAGTCTCTTGAGATGCAATGCAACTTATTTACAGGAAGCATACCAAAATCTTTTGTGAACTTGGCAGGCATCCAAAAGATGGATATTTCACGGAACAACTTGTCCGGAAAAATACCAGATTTTCTTGCAAACTTCAGTTTACTATATGATCTGAATTTGTCATTCAACAATTTTGAAGGAGAAGTTCCAGCAGGTGGTATTTTTCGTAATGCTAGTGTGGTATCAATAGAAGGGAATAATGGCTTGTGTGCAACAACATCAGTAGAAGGTATACCTCTTTGCTCAGTACAAGCTCACAAGAATAGAAGGCACAAGTCTCTGGTTCTAGTCCTAGTGATAGTAATACCAATTATTTCTATTGCCATCATTTCCTTAGTCTTTGCTGTATTTCTTTGGAGGAAGAGAATACAGGTGAAGACAAAATTTCCACAATATAATGAGCACAGGTTGAAGAATATAACATACGAAGACATTGTCAAGGCAACAAATAAGTTTTCTTCAGATAACTTAATTGGATCAGGATCATTTGCAATGGTTTATAAGGGTAATCTGGAGCTTCAGGAAGACGAAGTTGCCATCAAGGTTTTTAACCTTGGTACATATGGAGCACATAAAAGCTTCATTGCAGAGTGTGAAACACTAAGAAATGTCCGCCATCGAAATCTTGTGAAAATCATTACTTTATGTTCTTCAGTGGATTCCACTGGGGCAGACTTCAAGGCCCTAGTGTTCCAATACATGCGAAATGGGAACCTAGACACATGGCTACATCCAAAGGCCCATGAACTTAGTCAAAGAAAGGCTCTAACTATTAGCCAAAGAGTTAATATAACCTTGGATGTGGCGTTTGCTTTAGATTATCTTCATAACCAGTGTGCAACTCCACTAATACATAGTGACTTGAAGCCAAGCAATGTTCTGTTGGATCTTGACATGGTTGCATATGTCAGCGACTTTGGCCTAGCAAGATTTGTATGCAGTAGATTGACTGCACATGAAGATACCTCTACAAGTTTGGCTTGCCTAAAAGGATCAATTGGATACATTCCGCCAGGTAGATAAGCTTACTTCTAAACTTTTGGCTCAATTTGTTCTTTATGTACTTGGGCAAAACTTTAAAATAGTACCTAGCTTATAGTTTTATAACTTTGTTAAATCTAATGCAGAGTACAGCATGAGCAAAGATATCTCAACCAAGGGTGATGTGTACAGTTTTGGAATACTCTTGTTAGAAATTATAACCGGGAGCAGCCCAACTGACGGAAAATTTAATGGCAGCACAACCCTGCATGACTTTGTTGCAAGAGCATTTCCCAATAATATCTACCAGGTAGTTGATCCAACAATGCTACATGCTGACCTCGATGCAACCAACCTGATGGATAATTGTATCATTCCATTTGTCAAAATAGGGCTATCTTGTTCTATGTCACTGCCCAAAGACCGACCAGAAATGGGACAAGTTGCTAGCATGATTCTTGAAATCAAGCATGCAACCTCAAACAGGCATGATAGATTAAACTAATACTATTTGGTAGGTTCTGTTTCATATAGAGAAGAGTATACCAATATAACATCCTGTGGATATTTCTTTATGAATGCAGTATGTTTAGTGACATGTTTAGAACCTTGAGTGGGCATACCTACCTCTCTCTCTCTCGCATCATTCCGTTGGTCAAAAACTTATAATAGGTCTCTGCTGCTCCATGGCATCTCCTAAGGACCGATTGGAAATGGGACAAGTTTCTGCCAAAAATCCAAAGCATCAGCAAGATCTGTAGTGTTCTATTTAACTGAAAATGGTTCTGCTGAGCTACCTTTTCCATTTGCATTTGCACTTTTTATGGTTATTCTTTTTTCGAAACGAACCGCACGAGACAGTGCGAGTTTCATGTATTGATAAAGCAGGAGAAAAATACAATCTATAGTCCTGGAAGACCACAGACCAGAAAAAGAAAATACAGCCACACCGCGCGTCTACAACAAAACCCACTGCATGAGCGAAACTGAAGGTCTTCGAGACGACACCTTCAAGAAGGGTACGACACCAAAGGTGCCACTGTCGCCTGTCCCGGAGGGCCAGGACAAGGTTTTCACCTGAAGAAAGTAATTGGGAGAGACAAGAAAAGCGGCAACACCCCAAGAGGAAAAAACGACACCCGCAGGCGTCGTTGTTGCTGGCCCGAAGGCAGAGCTTTCGCCCAAAATTTGTCTCTCCCAAGGACTGAACTCCTACACGCTCCGCAGCCACCACCAGCGAAAACCTTCGACGCACAGCCACCGCACCGGCGCCACACCGCCAGTCAATCGCCATGGGGAAGCTCGAACCTCGACACACACCGGCTCCATCCACGCAGTTGGGTTGGATGGGGAGAGGGTGAGAGAGAAGAATGGATGCCCTCTCCCCCACACTAGCCCGCCCGACGTGGCCAACTTTTGCCGACAAAGTCGCCGTCGCAAGAGGACATATGTCTAGGAAGGTGCACGTCGAGAGGACCGCGGCTCCCCCTGACAGAGTAACCGCCGGCTCCGCCACGAATCCGTTGTCCGTGTCACCTCGAACCACCAGACCGTTTCGCCGGCGCCATGCCACCCTCCGCACCGTGCTGTTGACCCCTCCGCCACAGTGCACCCGCCGTCCAAAACGACGCGGCACTAGAACGTCTACCGAAGCACGATGCTCTCGCCCCAAATCCGGTGGAGGGGACCGGATCTTGCCCGGGGGAAGCCAGACGCCCAGTCGCGCGGCGTTGGCTGCCCACCGCAGCTTGGGCTCCGCCGCCGCCAT
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| CDS seq | ATGGCGGCGGCGGAGCCCAAGCTGCGGTGGGCAGCCAACGCCGCGCGACTGGGCGTCTGGCTTCCCCCGGGCAAGATCCGGTCCCCTCCACCGGATTTGGGGCGAGAGCATCGTGCTTCGGTAGACGTTCTAGTGCCGCGTCGTTTTGGACGGCGGGTGCACTGTGGCGGAGGGGTCAACAGCACGGTGCGGAGGGTGGCATGGCGCCGGCGAAACGGTCTGGTGGTTCGAGGTGACACGGACAACGGATTCGTGGCGGAGCCGGCGGTTACTCTGTCAGGGGGAGCCGCGGTCCTCTCGACGTGCACCTTCCTAGACATATGTCCTCTTGCGACGGCGACTTTGTCGGCAAAAGTTGGCCACGTCGGGCGGGCTAGTGTGGGGGAGAGGGCATCCATTCTTCTCTCTCACCCTCTCCCCATCCAACCCAACTGCGTGGATGGAGCCGGTGTGTGTCGAGGTTCGAGCTTCCCCATGGCGATTGACTGGCGGTGTGGCGCCGGTGCGGTGGCTGTGCGTCGAAGGTTTTCGCTGGTGGTGGCTGCGGAGCGTGTAGGAGTTCAGTCCTTGGGAGAGACAAATTTTGGGCGAAAGCTCTGCCTTCGGGCCAGCAACAACGACGCCTGCGGTAAGGTTATTGCTCGTGAGGACAAGTACTTCAAGGGAAGAACTATTCCCTATGGACTCTGGGATGATCCCTGTGAGAGCATTGCTCTCGAGATTAACATATGTGAGCGAAAGGCTGCTTCCTAA
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| Protein seq | MAAAEPKLRWAANAARLGVWLPPGKIRSPPPDLGREHRASVDVLVPRRFGRRVHCGGGVNSTVRRVAWRRRNGLVVRGDTDNGFVAEPAVTLSGGAAVLSTCTFLDICPLATATLSAKVGHVGRASVGERASILLSHPLPIQPNCVDGAGVCRGSSFPMAIDWRCGAGAVAVRRRFSLVVAAERVGVQSLGETNFGRKLCLRASNNDACGKVIAREDKYFKGRTIPYGLWDDPCESIALEINICERKAAS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0005450 | OsLima_Ung0005450.01 | ChrUN-Ctg58 | 67532 | 71651 | - | NAM | ||
| CDS seq | ATGGCGGCGGCGGAGCCCAAGCTGCGGTGGGCAGCCAACGCCGCGCGACTGGGCGTCTGGCTTCCCCCGGGCAAGATCCGGTCCCCTCCACCGGATTTGGGGCGAGAGCATCGTGCTTCGGTAGACGTTCTAGTGCCGCGTCGTTTTGGACGGCGGGTGCACTGTGGCGGAGGGGTCAACAGCACGGTGCGGAGGGTGGCATGGCGCCGGCGAAACGGTCTGGTGGTTCGAGGTGACACGGACAACGGATTCGTGGCGGAGCCGGCGGTTACTCTGTCAGGGGGAGCCGCGGTCCTCTCGACGTGCACCTTCCTAGACATATGTCCTCTTGCGACGGCGACTTTGTCGGCAAAAGTTGGCCACGTCGGGCGGGCTAGTGTGGGGGAGAGGGCATCCATTCTTCTCTCTCACCCTCTCCCCATCCAACCCAACTGCGTGGATGGAGCCGGTGTGTGTCGAGGTTCGAGCTTCCCCATGGCGATTGACTGGCGGTGTGGCGCCGGTGCGGTGGCTGTGCGTCGAAGGTTTTCGCTGGTGGTGGCTGCGGAGCGTGTAGGAGTTCAGTCCTTGGGAGAGACAAATTTTGGGCGAAAGCTCTGCCTTCGGGCCAGCAACAACGACGCCTGCGGTAAGGTTATTGCTCGTGAGGACAAGTACTTCAAGGGAAGAACTATTCCCTATGGACTCTGGGATGATCCCTGTGAGAGCATTGCTCTCGAGATTAACATATGTGAGCGAAAGGCTGCTTCCTAA
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| Protein seq | MAAAEPKLRWAANAARLGVWLPPGKIRSPPPDLGREHRASVDVLVPRRFGRRVHCGGGVNSTVRRVAWRRRNGLVVRGDTDNGFVAEPAVTLSGGAAVLSTCTFLDICPLATATLSAKVGHVGRASVGERASILLSHPLPIQPNCVDGAGVCRGSSFPMAIDWRCGAGAVAVRRRFSLVVAAERVGVQSLGETNFGRKLCLRASNNDACGKVIAREDKYFKGRTIPYGLWDDPCESIALEINICERKAAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0150950 | RBH | 0.0 | 0.0 | 1.030064 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05770 | RBH | 0.000000 | 0.0 | 0.235211 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0150950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003490 | SBH | 0.049562 | 0.000000 | 0.509663 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020890 | SBH | 1.563252 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0364600 | SBH | 0.091384 | 0.0931815 | 0.342994 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020330 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0340500 | SBH | 0.053506 | 0.225544 | 1.7957555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020750 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020790 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020410 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021090 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020580 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020470 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0016090 | SBH | 0.000000 | 0.000000 | 0.000000 |
