Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_05g0016200 | OGI:01009200 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr05:20026428-20026937 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCCCGCCCGACGTGGCCAACTTTTGCCGACAAAGTCGCCGTCGCAAGAGGACATATGTCTGGGAAGGTGCACGTCGAGAGGACCGCGGCTCCCCCTGACAGAGTAACCGCCGGCTCCGCCACGAATCCGTTGTCCGTGTCACCTCGAACCACCAGACCGTTTCGCCGGCGTCATGCCACCCTCCGCACCGTGCTGTTGACCCCTCCGCCACAGTGCACCCGCCGTCCAAAATGACGCGGCACTAGAACGTCCACCGAAGCACGATGCTCTCGCCCCAAATCCGGTGGAGGGGACCGGATCTTGCCCGGGGGAAGCCAGACGCCCAGTCGCGCGGCGTTGGCTGCCCACCGCAGCTTGGGCTCCGCCGCCGCCATCACCACCAGGCTCCACCGCCGCCACCACTCAGCCCCGCCACCAGCCCCCACCCCGCTGCCAGCACCGCCACCGTGCCTTGCCACCATCTCCCACCCCGCCTCCAGCACCACTGGATCTCGCGCGCGCCGCGCCAT
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| CDS seq | ATGGCGCGGCGCGCGCGAGATCCAGTGGTGCTGGAGGCGGGGTGGGAGATGGTGGCAAGGCACGGTGGCGGTGCTGGCAGCGGGGTGGGGGCTGGTGGCGGGGCTGAGTGGTGGCGGCGGTGGAGCCTGGTGGTGATGGCGGCGGCGGAGCCCAAGCTGCGGTGGGCAGCCAACGCCGCGCGACTGGGCGTCTGGCTTCCCCCGGGCAAGATCCGGTCCCCTCCACCGGATTTGGGGCGAGAGCATCGTGCTTCGGTGGACGTTCTAGTGCCGCGTCATTTTGGACGGCGGGTGCACTGTGGCGGAGGGGTCAACAGCACGGTGCGGAGGGTGGCATGA |
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| Protein seq | MARRARDPVVLEAGWEMVARHGGGAGSGVGAGGGAEWWRRWSLVVMAAAEPKLRWAANAARLGVWLPPGKIRSPPPDLGREHRASVDVLVPRHFGRRVHCGGGVNSTVRRVA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_05g0016200 | OsARC_05g0016200.01 | Chr05 | 20026428 | 20026937 | - | NAM | ||
| CDS seq | ATGGCGCGGCGCGCGCGAGATCCAGTGGTGCTGGAGGCGGGGTGGGAGATGGTGGCAAGGCACGGTGGCGGTGCTGGCAGCGGGGTGGGGGCTGGTGGCGGGGCTGAGTGGTGGCGGCGGTGGAGCCTGGTGGTGATGGCGGCGGCGGAGCCCAAGCTGCGGTGGGCAGCCAACGCCGCGCGACTGGGCGTCTGGCTTCCCCCGGGCAAGATCCGGTCCCCTCCACCGGATTTGGGGCGAGAGCATCGTGCTTCGGTGGACGTTCTAGTGCCGCGTCATTTTGGACGGCGGGTGCACTGTGGCGGAGGGGTCAACAGCACGGTGCGGAGGGTGGCATGA
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| Protein seq | MARRARDPVVLEAGWEMVARHGGGAGSGVGAGGGAEWWRRWSLVVMAAAEPKLRWAANAARLGVWLPPGKIRSPPPDLGREHRASVDVLVPRHFGRRVHCGGGVNSTVRRVA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0150950 | RBH | 0.0 | 0.0 | 1.030064 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05770 | RBH | 0.000000 | 0.0 | 0.235211 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0150950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0016340 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0016340 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0021770 | SBH | 0.840305 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0016360 | RBH | 0.0 | 11.602736 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0364600 | SBH | 0.091384 | 0.0931815 | 0.342994 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0015890 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0308000 | RBH | 0.005065 | 0.979375 | 0.02907 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0016190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0016150 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0016210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0016240 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0016300 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G015790 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0016090 | RBH | 0.000000 | 0.000000 | 0.000000 |
