Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0127450 | OGI:01005160 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:1511964-1512646 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGGTGTCCACGACGGCGCAGCTCTGCAAGTCTGCAGGTGTCATCGCAGCCTCCACCACGGCTCATCTCCGAGCACTTGCCGGCCGGTGATCCGCCGTCGCCGCTTAGCCGGAGCAGAAAGAGGAGGAGCTTCTCCGAGGAAGAGGACGAGCTCCTCCTCAAGCTGCACGCTTTGCTCGGCAACCGGTACGTACGTAATTAATTAATTCCCCCAATATCAACAATATTCCGCTATTAATTCACCGTTTGTTATAATTAAGCAATGATCAAATTAATATTGATGCATATATATCAAGTTGGTCCCTCATCGCTGGGAGGCTACCGGGGAGGACAGACAAAGAGGTCATGAACCACTGGAACTCCAAGCTGATGGATAGTACTATAGAGCATCCACCCTCGCTACATGATGATGAACACCGTCGACGGCGTCGCCGTCTGCGAAGCGAAGCTCACGACGAACGTGGTGCAAAGCATCCGGGCCACAATTCATCTTCTTCCTCCAAGGACGTCAATGGCGATGAATGTACAGTCGCCGACGACGCAAGTAGCTGTAACCACCAAGATGATAACCGGGCTGTTGCAGAATTGAACCTAGAGCTTACCCTCTCTACGCCTTGCATCTACTTGTTACTTGGACAGGATCGTGAGGATGGATCGAAGAGCAACCAGGGTTTAATTTGA
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| CDS seq | ATGAGGTGTCCACGACGGCGCAGCTCTGCAAGTCTGCAGGTGTCATCGCAGCCTCCACCACGGCTCATCTCCGAGCACTTGCCGGCCGGTGATCCGCCGTCGCCGCTTAGCCGGAGCAGAAAGAGGAGGAGCTTCTCCGAGGAAGAGGACGAGCTCCTCCTCAAGCTGCACGCTTTGCTCGGCAACCGTTGGTCCCTCATCGCTGGGAGGCTACCGGGGAGGACAGACAAAGAGGTCATGAACCACTGGAACTCCAAGCTGATGGATAGTACTATAGAGCATCCACCCTCGCTACATGATGATGAACACCGTCGACGGCGTCGCCGTCTGCGAAGCGAAGCTCACGACGAACGTGGTGCAAAGCATCCGGGCCACAATTCATCTTCTTCCTCCAAGGACGTCAATGGCGATGAATGTACAGTCGCCGACGACGCAAGTAGCTGTAACCACCAAGATGATAACCGGGCTGTTGCAGAATTGAACCTAGAGCTTACCCTCTCTACGCCTTGCATCTACTTGTTACTTGGACAGGATCGTGAGGATGGATCGAAGAGCAACCAGGGTTTAATTTGA
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| Protein seq | MRCPRRRSSASLQVSSQPPPRLISEHLPAGDPPSPLSRSRKRRSFSEEEDELLLKLHALLGNRWSLIAGRLPGRTDKEVMNHWNSKLMDSTIEHPPSLHDDEHRRRRRRLRSEAHDERGAKHPGHNSSSSSKDVNGDECTVADDASSCNHQDDNRAVAELNLELTLSTPCIYLLLGQDREDGSKSNQGLI |
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| Function | Transcription factor MYB3 [UniProtKB/Swiss-Prot:Q9S9K9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0127450 | OsNip_01t0127450-00 | Chr01 | 1511964 | 1512646 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGGTGTCCACGACGGCGCAGCTCTGCAAGTCTGCAGGTGTCATCGCAGCCTCCACCACGGCTCATCTCCGAGCACTTGCCGGCCGGTGATCCGCCGTCGCCGCTTAGCCGGAGCAGAAAGAGGAGGAGCTTCTCCGAGGAAGAGGACGAGCTCCTCCTCAAGCTGCACGCTTTGCTCGGCAACCGTTGGTCCCTCATCGCTGGGAGGCTACCGGGGAGGACAGACAAAGAGGTCATGAACCACTGGAACTCCAAGCTGATGGATAGTACTATAGAGCATCCACCCTCGCTACATGATGATGAACACCGTCGACGGCGTCGCCGTCTGCGAAGCGAAGCTCACGACGAACGTGGTGCAAAGCATCCGGGCCACAATTCATCTTCTTCCTCCAAGGACGTCAATGGCGATGAATGTACAGTCGCCGACGACGCAAGTAGCTGTAACCACCAAGATGATAACCGGGCTGTTGCAGAATTGAACCTAGAGCTTACCCTCTCTACGCCTTGCATCTACTTGTTACTTGGACAGGATCGTGAGGATGGATCGAAGAGCAACCAGGGTTTAATTTGA
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| Protein seq | MRCPRRRSSASLQVSSQPPPRLISEHLPAGDPPSPLSRSRKRRSFSEEEDELLLKLHALLGNRWSLIAGRLPGRTDKEVMNHWNSKLMDSTIEHPPSLHDDEHRRRRRRLRSEAHDERGAKHPGHNSSSSSKDVNGDECTVADDASSCNHQDDNRAVAELNLELTLSTPCIYLLLGQDREDGSKSNQGLI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.873911 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g19970 | SBH | 0.000000 | 0.490542 | 0.236864 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0127450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025540 | SBH | 0.337171 | 0.000000 | 22.249197 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025150 | SBH | 0.190181 | 0.000000 | 12.008739 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025500 | SBH | 3.403959 | 0.0 | 21.993027 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024770 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0024520 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0025000 | SBH | 3.298044 | 2.2233945 | 6.990733 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004780 | SBH | 0.0 | 0.272322 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0024600 | RBH | 3.2156465 | 1.991825 | 5.3514725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001820 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024460 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024740 | SBH | 30.619612 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0024710 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024610 | SBH | 2.734950 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004850 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004740 | SBH | 0.0 | 0.000000 | 0.0 |
