Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0001820 | OGI:01005160 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:1351995-1356426 | ||||||||
| Gene Symbol | MYB1 | ||||||||||
| DNA seq | gcggcaatggcgctccacctcacccgtcccttcctccggccgtcgccgccgtcgccgccgccgccgcggccgactcgtcggagctcccgggctcattgcctcgccccttctgccagcgcgcggggcccgagcttcaggaggccctacacgtccgtcctggtggtccccaccggagtcggcgccgccgtcgggggtttcgccggcgatgcgcttcccgtggcgcgcgcgctcggtgccgtcgccgactgcgtcatctcccaccccaatgtaagtattaacttccagtagctgttagggttagttttggcttctccatggttgaagatttcgtcttcacataatcacaggtgctgaacgctgcgatgctctactggccgatgcccaacacgctctacgttgagggatacgcccttgacaggttcgctgaaggatcctgggctctccaaccagttcaccagaacaaggtactactaccaatttagtggttctagagattgctcagacacaaccatggataatgtaactgtaggtagctagttagctacggttttgttgatacattgacacattgtggctgcttcaacctaggtaggtttggtgttggattctggaatcgaggaggagcttcgactccgtcacttgcaggttgcggatgccgcgagggcttctcttgggctccctgtagtcgagtacattgtgactgatactcctttggaggtgctcattctgttctgatcccttctttttttgtcctgtgagtgagaatacgtttaagatctagtgatacctctagttagaaagataatttagtgcctgatgtaatattcatgcttacttatgacctgctcatttgtggtctagatcaagacatggtttgatccaaaatgtgggaagtctacagggagtgttgggaactctgattctctcctgagggcagttgaggccctggtgaaccgctctgatgtgaatgctgtggcggttgttgcgcgctttccagatgatgatccagaagattcagattgttatcgggaaggaaaggtaatacttgcctgctcaagtagctggtttattatttttcctaacaggttactgatagttgtgccacttagaattcttgaaacaccatgttgtcttgatttagtttgttatGggatgctcttcgatttttcaaatttactgtttggaccatctgaaatgtcccttgcaagttgcaacaacactctcttttcaagtagtttgaaagctgttggccttatggtgtcattttgctcgctgaatttttatattgatgcaattcaatggttgatactgatcacggtagacatgctgaggttatcatttgtgggtggtgttcagcatttccaagcatctatcatttctaatcttgtattttcttcaatgccatatcaatgcagggagttgatctgttggcaggagttgaagcgattatcagtcatctaattgtgaagaaattcaaaatcccagctgcccatgctcctgcagttttacccccagttctcagtctgtcagtgtccccaagatctgctgctgaagaggtttctactctttctgctgaactatgctggtgcataactaagttaactAaatatcagggatatgcttagtaatgaccctacaatgaaatgttgtatatcaggctaatttcaaatgttcactatctggtagttacatgtttccttaaagttagtccacttgttcacatccattcctagcatatagatcagtgctgtcctatgtcaaattaagcagtgctcgttaattttatatcatctttttgtaccagttctcattgatcttttttgtaacagattggacatacctttctaccttgtgtgcttgccgggttaagcaatgcccctcaatatgtgatgaggaggaatggaaacatggataatggttgcatagtggctagtgatgttgatagtgtgattcttccaaaagatgcttgcggaggagatggtactattgcctttgctagaactgctacaaataataaggtagatatcagtgataactgatgttttatctttccatttggattttattatcctcatgaataattgtttttttgcagcccttaatcattacggttcaagaaaatgaaacagttcttgatgatacccctgacaagttcaatatagaggcggtatgtaccacatgtcttgacaatttaacaaagctctcattctgatacttatgcaagaaatccatagcaatcttacagtgttgacccttttgctccccagctaaaTGtGTCCAGAACTATTGGGAAGCCATTGGAGTAATCGCAGCTCACAAGGCAGGTATCAACCCAAATGCTCTTAGAAGACAAGGAATTGATCATCTTAAAAGCTCTCTTAGACTATACCCTGCACAAAATCGTGGTTCTAGGAAATCGGCCTGTTCACCACCGCAGGAGAAACTATATACACATGAACTAGTTTAACAAATTTAGTTGTGCAACTAAAAGTTTATAGAATTCAGTTCTGGCAAGATGGGAGCCCCAAATTTTGAAGTCATTTGTACATATTCCACAAGAACAACACTGCAGTGGAATCCTAGTTAtagctgatgtacatatacaagccaaatttcttatggcatcacgatttagaggtaacatgtaacccacatcagtagtttgagtttgctaagacagaagcacagtgtcctggctttttgcccctccattggaaatataatttcatttcagttcacagcaatgaatgtagaagtttatgctgaattttagcaaatgctcgggcatatgcatctactttggtacgtttggtcgattagaatggccggccggccacgtgtgacctgcggacatgcaccgcttggtagcataagtctcattcagttgtggagtgatttggtaggtatactgcttccctattacagctaccgatcaaagtggaactacccttttattttacgtgtgtagctatttcagttagcacctgacttgctgttaatttactgtagtttcctgtcggctgcgcctcttgagattagcatttctcgcatgcttacttaccagctggtttgggtgaaaaattcgggcaaaatagtttttgggtacctgaaatttcagaaatttgaagctggcatatggaatcctcaccgtatcgctctatgcagtattcgtattttggttttgtaagtcgaaattttttaactttaactacattcgtaggaaaaataactaatatctacaacaataacaaataaatacacatattttatggtagattttaacgaataatttgacgttataaatgttggtgtgtttttcaaaaaacttaaaaagttagtcaaagtcaccttaatttagaaaaatactaaaacaccttacaatACGaagcaggggagtagcaacagggccgggaatggatggtttgtagctaccagcaagcgttcatggccggtttatgaattcttgctcgctgctgcccgcgcacgagccccttgcagcaagtcgcattatcgttcgttccaacacgtacccggctgaaccaaccagctgccggtcgcctcagctcgaccaacctgatcgacttccattccagtcaagtcaaagcctctctatctcccagcaactagccccgtttctatatatacatctgatcatatgcatgcagaattatattgtctcttctactgctactgatcgatcgatctagctaagacgatctctagctgtaatttgtgctaacacatgtgtaatgaGatgtccacgacggcgcagctctgcaagtctgcaggtgtcatcgcagcctccaccacggctcatctccgagcacttgccggccggtgatccgccgtcgccgcttagccggagcagaaagaggaggagcttctccgaggaagaggacgagctcctcctcaagctgcacgctttgctcggcaaccggtacgtacgtaattaattaattcccccaatatcaacaatattccgctattaattcaccgtttgttataattaagcaatgatcaaattaatattgatgcatatatatcaagttggtccctcatcgctgggaggctaccggggaggacagacaaagaggtcatgaaccactggaactccaagctgatggatagtactatagagcatccaccctcgctacatgatgatgaacaccgtcgacggcgtcgccgtctgcgaagcgaagctcacgacgaacgtggtgcaaagcatcccggccacaattcatcttcttcctccaaggacgtcaatggcgatgaatgtacagtcgccgacgacgcaagtagctgtaaccaccaagatgataaccgggctgttgcagaattgaacctagagcttaccctctctacgccttgcatctacttgttacttggacaggatcgtgaggatggatcgaagagcaaccagggtttaatttga
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| CDS seq | atggcgctccacctcacccgtcccttcctccggccgtcgccgccgtcgccgccgccgccgcggccgactcgtcggagctcccgggctcattgcctcgccccttctgccagcgcgcggggcccgagcttcaggaggccctacacgtccgtcctggtggtccccaccggagtcggcgccgccgtcgggggtttcgccggcgatgcgcttcccgtggcgcgcgcgctcggtgccgtcgccgactgcgtcatctcccaccccaatgtgctgaacgctgcgatgctctactggccgatgcccaacacgctctacgttgagggatacgcccttgacaggttcgctgaaggatcctgggctctccaaccagttcaccagaacaaggtaggtttggtgttggattctggaatcgaggaggagcttcgactccgtcacttgcaggttgcggatgccgcgagggcttctcttgggctccctgtagtcgagtacattgtgactgatactcctttggagatcaagacatggtttgatccaaaatgtgggaagtctacagggagtgttgggaactctgattctctcctgagggcagttgaggccctggtgaaccgctctgatgtgaatgctgtggcggttgttgcgcgctttccagatgatgatccagaagattcagattgttatcgggaaggaaagggagttgatctgttggcaggagttgaagcgattatcagtcatctaattgtgaagaaattcaaaatcccagctgcccatgctcctgcagttttacccccagttctcagtctgtcagtgtccccaagatctgctgctgaagagattggacatacctttctaccttgtgtgcttgccgggttaagcaatgcccctcaatatgtgatgaggaggaatggaaacatggataatggttgcatagtggctagtgatgttgatagtgtgattcttccaaaagatgcttgcggaggagatggtactattgcctttgctagaactgctacaaataataagcccttaatcattacggttcaagaaaatgaaacagttcttgatgatacccctgacaagttcaatatagaggcgAACTATTGGGAAGCCATTGGAGTAATCGCAGCTCACAAGGCAGGTATCAACCCAAATGCTCTTAGAAGACAAGGAATTGATCATCTTAAAAGCTCTCTTAGACTATACCCTGCACAAAATCGTGGTTCTAGGAAATCGGCCTGTTCACCACCGCAGGAGAAACTATATACACATGAACTAgtgtcatcgcagcctccaccacggctcatctccgagcacttgccggccggtgatccgccgtcgccgcttagccggagcagaaagaggaggagcttctccgaggaagaggacgagctcctcctcaagctgcacgctttgctcggcaaccgttggtccctcatcgctgggaggctaccggggaggacagacaaagaggtcatgaaccactggaactccaagctgatggatagtactatagagcatccaccctcgctacatgatgatgaacaccgtcgacggcgtcgccgtctgcgaagcgaagctcacgacgaacgtggtgcaaagcatcccggccacaattcatcttcttcctccaaggacgtcaatggcgatgaatgtacagtcgccgacgacgcaagtagctgtaaccaccaagatgataaccgggctgttgcagaattgaacctagagcttaccctctctacgccttgcatctacttgttacttggacaggatcgtgaggatggatcgaagagcaaccagggtttaatttga
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| Protein seq | MALHLTRPFLRPSPPSPPPPRPTRRSSRAHCLAPSASARGPSFRRPYTSVLVVPTGVGAAVGGFAGDALPVARALGAVADCVISHPNVLNAAMLYWPMPNTLYVEGYALDRFAEGSWALQPVHQNKVGLVLDSGIEEELRLRHLQVADAARASLGLPVVEYIVTDTPLEIKTWFDPKCGKSTGSVGNSDSLLRAVEALVNRSDVNAVAVVARFPDDDPEDSDCYREGKGVDLLAGVEAIISHLIVKKFKIPAAHAPAVLPPVLSLSVSPRSAAEEIGHTFLPCVLAGLSNAPQYVMRRNGNMDNGCIVASDVDSVILPKDACGGDGTIAFARTATNNKPLIITVQENETVLDDTPDKFNIEANYWEAIGVIAAHKAGINPNALRRQGIDHLKSSLRLYPAQNRGSRKSACSPPQEKLYTHELVSSQPPPRLISEHLPAGDPPSPLSRSRKRRSFSEEEDELLLKLHALLGNRWSLIAGRLPGRTDKEVMNHWNSKLMDSTIEHPPSLHDDEHRRRRRRLRSEAHDERGAKHPGHNSSSSSKDVNGDECTVADDASSCNHQDDNRAVAELNLELTLSTPCIYLLLGQDREDGSKSNQGLI |
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| Function | Uncharacterized lipoprotein syc1174_c [UniProtKB/Swiss-Prot:P08452] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0001820 | OsLima_01g0001820.01 | Chr01 | 1352001 | 1356426 | + | NAM | ||
| CDS seq | atggcgctccacctcacccgtcccttcctccggccgtcgccgccgtcgccgccgccgccgcggccgactcgtcggagctcccgggctcattgcctcgccccttctgccagcgcgcggggcccgagcttcaggaggccctacacgtccgtcctggtggtccccaccggagtcggcgccgccgtcgggggtttcgccggcgatgcgcttcccgtggcgcgcgcgctcggtgccgtcgccgactgcgtcatctcccaccccaatgtgctgaacgctgcgatgctctactggccgatgcccaacacgctctacgttgagggatacgcccttgacaggttcgctgaaggatcctgggctctccaaccagttcaccagaacaaggtaggtttggtgttggattctggaatcgaggaggagcttcgactccgtcacttgcaggttgcggatgccgcgagggcttctcttgggctccctgtagtcgagtacattgtgactgatactcctttggagatcaagacatggtttgatccaaaatgtgggaagtctacagggagtgttgggaactctgattctctcctgagggcagttgaggccctggtgaaccgctctgatgtgaatgctgtggcggttgttgcgcgctttccagatgatgatccagaagattcagattgttatcgggaaggaaagggagttgatctgttggcaggagttgaagcgattatcagtcatctaattgtgaagaaattcaaaatcccagctgcccatgctcctgcagttttacccccagttctcagtctgtcagtgtccccaagatctgctgctgaagagattggacatacctttctaccttgtgtgcttgccgggttaagcaatgcccctcaatatgtgatgaggaggaatggaaacatggataatggttgcatagtggctagtgatgttgatagtgtgattcttccaaaagatgcttgcggaggagatggtactattgcctttgctagaactgctacaaataataagcccttaatcattacggttcaagaaaatgaaacagttcttgatgatacccctgacaagttcaatatagaggcgAACTATTGGGAAGCCATTGGAGTAATCGCAGCTCACAAGGCAGGTATCAACCCAAATGCTCTTAGAAGACAAGGAATTGATCATCTTAAAAGCTCTCTTAGACTATACCCTGCACAAAATCGTGGTTCTAGGAAATCGGCCTGTTCACCACCGCAGGAGAAACTATATACACATGAACTAgtgtcatcgcagcctccaccacggctcatctccgagcacttgccggccggtgatccgccgtcgccgcttagccggagcagaaagaggaggagcttctccgaggaagaggacgagctcctcctcaagctgcacgctttgctcggcaaccgttggtccctcatcgctgggaggctaccggggaggacagacaaagaggtcatgaaccactggaactccaagctgatggatagtactatagagcatccaccctcgctacatgatgatgaacaccgtcgacggcgtcgccgtctgcgaagcgaagctcacgacgaacgtggtgcaaagcatcccggccacaattcatcttcttcctccaaggacgtcaatggcgatgaatgtacagtcgccgacgacgcaagtagctgtaaccaccaagatgataaccgggctgttgcagaattgaacctagagcttaccctctctacgccttgcatctacttgttacttggacaggatcgtgaggatggatcgaagagcaaccagggtttaatttga
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| Protein seq | MALHLTRPFLRPSPPSPPPPRPTRRSSRAHCLAPSASARGPSFRRPYTSVLVVPTGVGAAVGGFAGDALPVARALGAVADCVISHPNVLNAAMLYWPMPNTLYVEGYALDRFAEGSWALQPVHQNKVGLVLDSGIEEELRLRHLQVADAARASLGLPVVEYIVTDTPLEIKTWFDPKCGKSTGSVGNSDSLLRAVEALVNRSDVNAVAVVARFPDDDPEDSDCYREGKGVDLLAGVEAIISHLIVKKFKIPAAHAPAVLPPVLSLSVSPRSAAEEIGHTFLPCVLAGLSNAPQYVMRRNGNMDNGCIVASDVDSVILPKDACGGDGTIAFARTATNNKPLIITVQENETVLDDTPDKFNIEANYWEAIGVIAAHKAGINPNALRRQGIDHLKSSLRLYPAQNRGSRKSACSPPQEKLYTHELVSSQPPPRLISEHLPAGDPPSPLSRSRKRRSFSEEEDELLLKLHALLGNRWSLIAGRLPGRTDKEVMNHWNSKLMDSTIEHPPSLHDDEHRRRRRRLRSEAHDERGAKHPGHNSSSSSKDVNGDECTVADDASSCNHQDDNRAVAELNLELTLSTPCIYLLLGQDREDGSKSNQGLI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0001820 | OsLima_01g0001820.02 | Chr01 | 1351995 | 1354733 | + | IsoSeq | ||
| CDS seq | ggcaatggcgctccacctcacccgtcccttcctccggccgtcgccgccgtcgccgccgccgccgcggccgactcgtcggagctcccgggctcattgcctcgccccttctgccagcgcgcggggcccgagcttcaggaggccctacacgtccgtcctggtggtccccaccggagtcggcgccgccgtcgggggtttcgccggcgatgcgcttcccgtggcgcgcgcgctcggtgccgtcgccgactgcgtcatctcccaccccaatgtgctgaacgctgcgatgctctactggccgatgcccaacacgctcta
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| Protein seq | GNGAPPHPSLPPAVAAVAAAAAADSSELPGSLPRPFCQRAGPELQEALHVRPGGPHRSRRRRRGFRRRCASRGARARCRRRLRHLPPQCAERCDALLADAQHAL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 1354161 | 1354276 | + | OsLima_01g0001820.02 | OsLima_01g0001820.01,OsLima_01g0001820.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0127400 | RBH | 1.149578 | 1.249946 | 0.485101 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03660 | RBH | 0.469279 | 0.972879 | 0.195677 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0127400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002000 | RBH | 0.232244 | 0.0 | 2.175183 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001880 | RBH | 0.324904 | 0.509048 | 1.082045 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002010 | RBH | 0.765164 | 1.214200 | 0.544488 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001900 | RBH | 0.087127 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001970 | RBH | 4.787586 | 0.0 | 1.200872 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0025000 | RBH | 3.298044 | 2.2233945 | 6.990733 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001930 | RBH | 0.407152 | 0.000000 | 0.286325 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0024600 | RBH | 3.2156465 | 1.991825 | 5.3514725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001960 | RBH | 0.673108 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002010 | RBH | 3.949937 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001980 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001870 | RBH | 0.185170 | 0.784312 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002090 | RBH | 0.395422 | 0.0 | 0.642567 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001960 | RBH | 0.383161 | 2.411871 | 0.432225 |
