Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0024520 | OGI:01076340 | 5/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:25816811-25824926 | ||||||||
| Gene Symbol | TCL2, OsTCL2 | ||||||||||
| DNA seq | tcatgtgtcttgatgttttattgtccagaacttctctacttcttctgctgtccttccgggtattcttccagctataagttcccacctaaacatcatacaaggaacaaagttagggaactgcaaataatgtatttgtctggaacaggtgacttatggatttcataaaattttcaaactatgaaattgtggagattatgggtaccccatatccacacggcatggttatctgactaattataaaggataacttatatctatagaatatgtaacagatcatgacttgggtattacgtttccttgtatattacggaaaggccgaaagccctgatttgataagattgtaaagtagatttaggaaacggatactgtattggttaaggtttctatcttgtaatcctgccccccatcctatataaggtgggcaggaggccttctagggggcatatgagcatatatgatcatcagatctatactacaccccggcggattcaaatccccaaacaggagtagggtattatctctcatagagagggcctgaacctatctaaatccttgtctccgcatccatccactttttggtctcgtgcgctaccccttttattattgccgaattcatgtttcgacagttggcgcgctaggtaggggaacaccgagttatctatcaagaagtgcgatggaacaaatctccgacgttgccggattcatattcaccccaagcctctcacttcgggagtttcgatttcctcgtccacgagtttggaattttctgcttctgtaattcagatgcaaatcagtcgggaaggctcaagacctctttcatctcgttggatcgccaccatgtttaccggttttattgaagaaagttggcatgctgtgtttatcatctggttcaatttgttcggcgatatcaatgcaacggatcaattctcaaccgccagcattttttttagaagatgtcaattttcctagcgatactcaattatcaatccaaatcagagtcagcctgaacttggagccaatcgatcaaagcggtcgtcgccgagttatttccctgatcagcaatactcgaagacattaatcatgcaagtgtatgtttccatctgatacatgtgcaagagaacgtgcatggcaatttggtcgatcaatcaggagctgccacgtcatcagcaaccaggaaaggaatttgattagtcaagtgatttatctatctaagatgcatacatgcattcagtcgaccagggggcctccaccgcatcagcaccacagacgtcgccgccagtcgcctccatctcacgtgcatgcatcaacaatcacacattcataactctccgagcatcggtcacggccgccggacttttgcagtttttgtttgccatgatgatctgcacttaccatggcctcgacgacacgcacacacatgcagagtttttgccctctttggtggtttcatctttgttcagatcaattgggccaaacccgacgccatgcaatttttttaggaacaatgcaatacatcaagtcatgtacataatgttcatctatatattcggcatggctgcctaatcatgttggctgtcagctagggcacctttccaggatcagtcttcaccgatggccacggctgccttcgccgccgccgattggtgttttcgcctgcacggctggcctattatgccgccgttgatggacgtctacgtcttcaccgaccggccgcctcgttcgctgctgactggtgttctcgtctacacggttggttggtcatatcaccgttgttgggcatctatgtcttcaccgctggctgcctcacccgccgccgactggtgtctttgcctatacggttggttggtcacaccaccattgttgggcgtctacatcttcactgtccggccgcctcatctgccgccgactggtgtcttcgcctatacggttggttggtcacaccactgttgttgggcatctacgtcttcaccgaccggcttgatttcgtctgtcgccgcctggtgttttcaccttcacagctggcctgttatgccgctgattgatgggcgtctacgtcttcaccgtcagcttgctttcgtttgccgccgactggtgttctcgcctatatggttggcggactctgccaccgttgatgggcctcatcgtctaaaccagcttgccttcgccaccgttgcccggtgccttcgttgctattgatggacgactttgttcccacatcagccgcctctattgtcgacgaggggaatacaaaaataaaagagtcatcattatttttctttatatgatattttccttttcctctgcctcactacatcaactggtttgccattgactagtgagtcgggggctacagatgttatatcatatttttcaaggtttttcataatatttatcttgattgcttgcgacataatccgagtacaaaggtgcctttcgagttatggagttctatcttcctatgctttccgtttggtttgtcgatagatagttgcctttgggccgattcctagcacccgggggctcgttggatggaccgagtaacgcaaggtgctaagtattattcggaataaatcaaaagcataaagataagataaatttattttctgctcctaacaattgcaaaagtacccgagtagtaaattataattcgtgaaactttgttccattaatgacgaactcatgtcacttatatgcatgtttgggaagtgcctaggccgactcccagtgcttgggggctatgactagtcgggcaaagtgtttaaacgtaaggagtcatctgcttggtgaaatcaaaattgacaagaggagaaaatccatatttataaacattttaaaatatttgaatttttctcgagtattatatttatatcagatactactcatcctatatgtttgttctataggatccagatccagatatgcacaatagggattcatggctttaagcttatttcctacgcttcaggaatggatcagtcaaaacatcaccaccggcttgccttcgccacctccgactggtgtctccgcctgcacgattggcctattatgccgccattgttgggcatctacgtcttcaccgccggcttgccttcaccgccgccgactggtgtctccgcctgcacggctggcctattatgccgccgtttgttgggcgtctatgtcttcaccgaccggcttgccttcgccgccgccgactgatgtctccgcttgcatggctggcctattgtgtcgccgttgttcggcgtctacgtattcaccgccagctcgccttcgccgccgccgactggtgtctccgccttcacagctggcctattgtgccgccgttgttgggcatctacgtcttcaccgccggctcgcctttgccgccgccgactggtgtctccgccttcaccgactggcctattatgccgccgttgttgggcgtctacgtcttcaccgctggcttgccttcaccgccgccgactggtgtctccgcctgcacggctggcctattatgccgccattgttgggcgtctacgtcttaaccgccggcttgctttcagcgccgccgactggtgtctccgcctgcacggctggtttattatgccgtcgttgttggacgtctatatcttcaccgaccggccgcctcgtatgacgccaactggtgttatcgtcttcacggctggccacgtcgccaccaccgcaaataggcgtcatcaccttcaacgcaagctatctacgtttgctgccgactggtttcttcacttccatggctgcatgattctgccagtgctgattggccttatcgtcttcaccgccggcctgtctctgtcgctgccgactggtgtcctcgcctatacggttggttggtcacaccaccgttcacgggcgttcacgtcttcaccgaccggccgcctcgtccgccgccgactggtgttctcgcctacactgttggatggtcacaccactgttgttgggcatccacactttcaccgacggctgcctttgccgccgccgactagtatctacgcctgcacggctggcctattatgccgccgttgttgggtgtctacgtcttcaccgccggctaccttcgccgccgccgactggtatctccgcctgcacggctggcctattatgccgccgttgttgggtgtctacgtcttcaccgccggctgctttcgccgttgccgactggtatctctgcctacacggctggcctattatgccgccgttgatgggcgtctacgacttcttcgccgctcatggtgtcttcactttcatggctggcttatttttccgccgttcaaggacgtcttcgttttcatcatcattctacttcttccgtcgccgactagttatgtcgctgccgactggtgtttttatcttcacaactacatgtcttcgctaccggttttcatctgttggtgctgactcgtgttcacttcatcacggctttgcaactttgtcaccatggtggagcgacttcatctttattatcttcgacactggcaaactcaattgccgctacttcgcaagttttgctacttcaccagccatgacatctacaggagcttcgacatctcggcatgcatcaacaaatctaatgccgtgttattatactatagcaagtggttgtacaattttcacgatttctattcggacatcttcaatatttatcttcactcaagcaatgagtactcgatgacaagaagctacagttctcgactctatgttcagttgtttctcaactaaccaaagagtcggggtacaaaaatatatgactctcaaaattcgacaagctttatgtcaagatgaagcaatcaatcaatcaatgagtcaactctgggagttattatcttcgtttgcacttcagagccggcattttacttcagcgactccaattattacaccggcaactatagcaccaagttctactgccatcttcataaatcaagaggcgttgcatcaatcttcgtcacacacatgccaacattaagaaaatacttgagcatggatttcttctgaacagtttgatggattgtcgttactaacatcatcaccagcacatctacttcatcggccctgatgtctcctccgttgctaaggggtgactacgtcctcgccgtcggttgcttttgtcatcacagactttcatcgccgacttgttatttcatcttcacggttgacctactatgcaaacgctgatgagcgtcttcgtcattatcatcggctgctacaccgctattgactggattaccaacatcgtcatcttcatcaacatcctgtcaagcctcttcaacatagcccactctactgctattgatgggaaactttgtcatcatatttgatcatctctattgctaccaatcgtcattaccatcggttgcattcgtcgtcgtcaactatttcctgcattttcatgattggaggatttcgccatcatcgttgatgcgcgtctacgtcttcatcatcggcttgttttcatcgtcaccgactgatattctcgccttcacggttggcttattatgtcaccgctaatgggcgttttcatcttcttcaccagttgtatcgtctgtctccaactgattatttcgtcaccatggctacaaaactctgtcgctattgctgggtgccttcatcttcactgctagttgatctgactgctgccgactggtttcttcgcttccatgccgattgcatcagctatcaccgatggacaatttcaactactccaaaaggataagctatatgctcaggggcttatgagctcaagcacaaggatcataccttcaagttggattttgttctagatacaggcaacatgcactcgtagtcctgagattattttctatgctcgaagactggaccaatcattattccccgtaatggctatcaaccgaatacttgcgccagtcgggattcaatttttatatctattttggagtatcccataagggataatcactcagatcagaagctattcatatgagctacacttggtctatatcacccgaaagatttattactcgggagcatgttacatgcgtcatcctttaaagggtgtcgaaggcatatttttttttggcttaggcctaatatgtctgcagcccatattttaaggtgtggcctgtcacgttcttttagggacttaggcactttttgcttagactaaagtgcgcgtgatcaagtgcccaataccttaaaatccttttataccgcagttactcaactttttaggagttggtacaatgcatcttaaaaggtgtcaaacagtaaagctttatatagctgccctgctgacttttttatataagtcaaggtgctgtttgggtttttaagcaattgattggatacaatatcgttgctttttgtcacgtaagtgtgcatttttattgaccaatattatggcttaggctgattatatatcttgctcattttccaggcggttggtaatcttttatgagtttatttactcggattttacaccacgtatgccgtatatttccgggtgtggtgaaaccatgtgtcttttagggacttaagcacatctgttaaagcagtgtgcgcatggcgtatgcccaatactttcgaaatttctttattcacagcattcaagcttttttatagctgttttgctatgtgaattttcaatgatgtagtcaactttaggttgctcgtatcaatttttacaaagcagtcggtatatcacttggatcatgttatttgggggattcacaccgcatatgctatatgttgatatcaagtcgcttggttgattacaattatcaaaaccacttggttggttggattatttattcctttactatatgcttagtttgttcagctaaccacatagtcgggggctacacctattaggtgcttctagtcgatgcacctgactttatttttcagccctccacagtcttcatatttggtaaaagtactcgggagaccatggcaaagatgattgcagcacttggctttggagtaatcttgtttgagagaagattatcttttcgactgtgaaggtctcaggggctactgtggagattatgggtaccccatacccacacggcatgcttatccgactagttataggggataacttatatctatagaatatgtaacaaatcatgacttgggtattacgtttccttgtatattacagaacggcctaaagtcctgatttgataagattgtgaagtagatttagaaaaccgataccgtattggttaaggtttctatcttgtaatccttccccccatcctatataaggtgggcaggaggccttctagggggcatatgagcacatatgatcgtcagatctatactacaccccggcggattctaatccccaaacaggagtaggtattatctctcatagtgaggacctgaacctgtctaaatccttgtcttcgcatccatccactttttggtctcgtgcgctacccccttttattattgccgaattcatgtttcgattgaaaagacaatgtttctttatttttacttgatgcaccttacaggtatgtgtattaggataccttttcccgacaagcctgtgcattctgaaaacaagatcttcctcttcttatgtgaaatgaacaaaattctgtgcagtgctattaacttctgcgaatttacaaaaaaatatggtcaccagagtaagcaaaatagcccagtagccaaaccatcttgaaatatgtttcaagttataattttatggtctatattataatttgcaatgtgtccactagaatttttcaaattgcaaattccttgtttccttgtcagtatgctccttcgctgctactttctgacttctcgtttctctttgttctctccattgacataaccaaataaagcatcaagatgcaaagtttgacaatattcaggttaaatatcagtaaacattaacaaaatgacactggtaaaatgatatgcaccattcctggcatcttcattttccccttttgaacataatgctatgaaatgaatagccgtaattaagagaagcaagaatgaagtggctaaaaggaagaacaagaaaacaaagatacggctaaccttttgtttcacgactatcactggttttggaattctttcctagctggcttccactgctactttccat
More
|
||||||||||
| CDS seq | atggaaagtagcagtggaagccagctaggaaagaattccaaaaccagtgatagtcgtgaaacaaaagaagaggaagatcttgttttcagaatgcacaggcttgtcgggaaaaggtgggaacttatagctggaagaatacccggaaggacagcagaagaagtagagaagttctggacaataaaacatcaagacacatga |
||||||||||
| Protein seq | MESSSGSQLGKNSKTSDSRETKEEEDLVFRMHRLVGKRWELIAGRIPGRTAEEVEKFWTIKHQDT |
||||||||||
| Function | MYB-like transcription factor ETC3 [UniProtKB/Swiss-Prot:Q9M157] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0024520 | OsPr106_01g0024520.01 | Chr01 | 25816811 | 25824926 | - | NAM | ||
| CDS seq | atggaaagtagcagtggaagccagctaggaaagaattccaaaaccagtgatagtcgtgaaacaaaagaagaggaagatcttgttttcagaatgcacaggcttgtcgggaaaaggtgggaacttatagctggaagaatacccggaaggacagcagaagaagtagagaagttctggacaataaaacatcaagacacatga |
|||||||
| Protein seq | MESSSGSQLGKNSKTSDSRETKEEEDLVFRMHRLVGKRWELIAGRIPGRTAEEVEKFWTIKHQDT |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0619100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43180 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0619100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025540 | SBH | 0.337171 | 0.000000 | 22.249197 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025120 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025500 | SBH | 3.403959 | 0.0 | 21.993027 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024770 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025380 | RBH | 0.0 | 11.259335 | 3.896286 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0413600 | SBH | 0.0219195 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024200 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0402000 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024460 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024680 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0024710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024610 | SBH | 2.734950 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G024820 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0024570 | SBH | 0.0 | 0.0 | 0.0 |
