Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0619100 | OGI:01076280 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:24643224-24644218 | ||||||||
| Gene Symbol | TCL1, OsTCL1, TCL2, OsTCL2 | ||||||||||
| DNA seq | TCATGTGGCTTGATGTTTAATTGCCCAGAACTTCTCTACTTCTTCTGCTGTCCTTCCCGGTATTCTTCCAGCTATAAGTTCCCACCTAAACATCATAGAAGGAGCAAAGTTAGGGAACTGCAAATAATGTATTTGCCTGGAACAGGCTGACTTATGGATTTCATAAACTTTCATACTATGAAATAATCATAGTATAAGCTAGATCGATTAAAAAGACACTGTGTCTTCATTTTCACTTGATGCACATTACAGGTATGTGTATTAGGATACCTGTTCCCGACAAGCCTGTGCATTCTGAAAACAATATCTTCCTCTTCTTCTGTGAAATGAACAAAATTTTGCGCAGTGCTATTAACTTCTGCGAATTTACAAAAAATATGGTGACCAGAGTAAGCAAAATAGCCCAGTAGCCAAACCATCTTGAAATATGTTTCAAGTTACAATTTTATGGTTTATATTACAATTTGTATGTCCACTAGAATTTTTCAAATTGCAAATTCCTTGTTTCTTTCTGACTTCTCGTTTCCTTTTGTTCTCTCCATTGACATAACCAAAAAAAGCATCAAGATGCAAAGGGTGACAGTAAGGTATTTTACAGTTTTTTAGAAAGTACATTCAAATACCTAAATTTTACATTAAAATTTTTGATACCTTGAGATACCTAGTACCTAGAGGTACCAAATTTTACACTAGAAAATACGGTACCTCTAGGTACCTTCTCAAGGATGGTAAAAATACCCGTGTGACAATAGGCAGGTTAAATATCAGTAAACATTAACAAAATGACACTAGTAAAATGATATACACCTTTTCTGGCATCTTCATTTTCCCCTTTTGGACATAATGCTACGAAATGAATAGCCGTAATTAAGAGAAGCAAGGATGAAGTGGCTAAAAGGAAGAACAAGAAAACAAAGATACAACTAACCTTTTGTTTCACGACCATCACTTGTTTTGGAATTCTTTCCCAGCTGGCTTCCACCGCTACTTTCCAT
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| CDS seq | ATGGAAAGTAGCGGTGGAAGCCAGCTGGGAAAGAATTCCAAAACAAGTGATGGTCGTGAAACAAAAGAAGTTAATAGCACTGCGCAAAATTTTGTTCATTTCACAGAAGAAGAGGAAGATATTGTTTTCAGAATGCACAGGCTTGTCGGGAACAGGTGGGAACTTATAGCTGGAAGAATACCGGGAAGGACAGCAGAAGAAGTAGAGAAGTTCTGGGCAATTAAACATCAAGCCACATGA |
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| Protein seq | MESSGGSQLGKNSKTSDGRETKEVNSTAQNFVHFTEEEEDIVFRMHRLVGNRWELIAGRIPGRTAEEVEKFWAIKHQAT |
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| Function | MYB-like transcription factor TCL2 [UniProtKB/Swiss-Prot:B3H4X8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0619100 | OsNip_01t0619100-01 | Chr01 | 24643224 | 24644218 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAAAGTAGCGGTGGAAGCCAGCTGGGAAAGAATTCCAAAACAAGTGATGGTCGTGAAACAAAAGAAGTTAATAGCACTGCGCAAAATTTTGTTCATTTCACAGAAGAAGAGGAAGATATTGTTTTCAGAATGCACAGGCTTGTCGGGAACAGGTGGGAACTTATAGCTGGAAGAATACCGGGAAGGACAGCAGAAGAAGTAGAGAAGTTCTGGGCAATTAAACATCAAGCCACATGA
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| Protein seq | MESSGGSQLGKNSKTSDGRETKEVNSTAQNFVHFTEEEEDIVFRMHRLVGNRWELIAGRIPGRTAEEVEKFWAIKHQAT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43180 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0619100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025540 | RBH | 0.337171 | 0.000000 | 22.249197 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025120 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025500 | RBH | 3.403959 | 0.0 | 21.993027 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0024500 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0413600 | RBH | 0.0219195 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024180 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0402000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024440 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024440 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024680 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0024690 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024610 | RBH | 2.734950 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G024820 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0024570 | RBH | 0.0 | 0.0 | 0.0 |
