Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0124200 | OGI:01004680 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:1347665-1348723 | ||||||||
| Gene Symbol | RBBI3-1, RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4, APIP4, OsAPIP4 | ||||||||||
| DNA seq | GGGTGCATGCTTGCGTTGCATATATATTTTATTTTCCCTCTTGGTCCACACAAGCGAACAGGGACAAATTAAACACACCCACACACATGGAGCACACAAACTAACAAAGCATGCAAGATGCACAAAAGCTGCAGAGCACTGAAAAATCTGGATGGAGCTAAGCTCTAGCCTCTAGCTATACCAACTCTGAATGATCGAACGAACGATCAGCTAGCTGCAAGCTAGGGCGAGTTTTATTGATGGACACACAGATCGATCATCGATCATCTGTAGCTAGCTAGTTCTCCGCTCGGGGTTTGCACATGGGCCCGGGCTGGCCGGTGAAGCGGTCCTTGCAGACGTAGCGAGGCGGCTCTGACGACTCCACACGCTGGCAATCCTTGCACGCGGCGGCGCACTTGTTCACCTCGTCCATGCAGCGGCAGGTCGGCGGGTTCATCTTGTTGCAGAAGGCCTTGTCGCAGCATTTCCCCCATGGCCGCGGCGTGCACAAGGGGCCCGGGTCGGCGCCCCAGTAGACGTCCTCGCAGATGAGCGGCCCCGGGAACGGCCCCGGCGCCTCCCTGCACGACTTGCACGCGGCGGTGCACTTGCCGGGCTCCAGCTCGTCGTCGCAGCGCCAGAACGGCGGGAAGATCCTCTGCGGCAGCTGCACGATGCTGTCACAGCACTTCCACGGCCTCTTCGTCGTCGGCTGATCCGGCGCCGTGCACATGTGGCCCGGGTCCACCGTCGAGTACCAGTCGCGGCACACGAAGGCGCCGCGGGGGAAGTCGCCGGGCGCCTCCACGCACTCCTTGCAGGCGGCGGAGCACTGCTTCACCTCGTCGTTGCAGCGGTACAGCGGCGGGAAGATCTCGAGCGGGGACATCTCGATGTTGTCGCAGCAGTCCCAGGGTTTGGGCGGGCGTGGTGGTGCTTCGGCGCCGTCGCTTGGGAGACGGATCATGGTGTCGCCGTCGCCGTGGGCGGCGACGAGGCCGGCGAGGAGGAAGAGAAGGATGGTGGAAATAGCCATGGTGGTGTTGCTCATCTTTGGTTGGTGTGGGTGCTTGTGAT
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| CDS seq | ATGAGCAACACCACCATGGCTATTTCCACCATCCTTCTCTTCCTCCTCGCCGGCCTCGTCGCCGCCCACGGCGACGGCGACACCATGATCCGTCTCCCAAGCGACGGCGCCGAAGCACCACCACGCCCGCCCAAACCCTGGGACTGCTGCGACAACATCGAGATGTCCCCGCTCGAGATCTTCCCGCCGCTGTACCGCTGCAACGACGAGGTGAAGCAGTGCTCCGCCGCCTGCAAGGAGTGCGTGGAGGCGCCCGGCGACTTCCCCCGCGGCGCCTTCGTGTGCCGCGACTGGTACTCGACGGTGGACCCGGGCCACATGTGCACGGCGCCGGATCAGCCGACGACGAAGAGGCCGTGGAAGTGCTGTGACAGCATCGTGCAGCTGCCGCAGAGGATCTTCCCGCCGTTCTGGCGCTGCGACGACGAGCTGGAGCCCGGCAAGTGCACCGCCGCGTGCAAGTCGTGCAGGGAGGCGCCGGGGCCGTTCCCGGGGCCGCTCATCTGCGAGGACGTCTACTGGGGCGCCGACCCGGGCCCCTTGTGCACGCCGCGGCCATGGGGGAAATGCTGCGACAAGGCCTTCTGCAACAAGATGAACCCGCCGACCTGCCGCTGCATGGACGAGGTGAACAAGTGCGCCGCCGCGTGCAAGGATTGCCAGCGTGTGGAGTCGTCAGAGCCGCCTCGCTACGTCTGCAAGGACCGCTTCACCGGCCAGCCCGGGCCCATGTGCAAACCCCGAGCGGAGAACTAG
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| Protein seq | MSNTTMAISTILLFLLAGLVAAHGDGDTMIRLPSDGAEAPPRPPKPWDCCDNIEMSPLEIFPPLYRCNDEVKQCSAACKECVEAPGDFPRGAFVCRDWYSTVDPGHMCTAPDQPTTKRPWKCCDSIVQLPQRIFPPFWRCDDELEPGKCTAACKSCREAPGPFPGPLICEDVYWGADPGPLCTPRPWGKCCDKAFCNKMNPPTCRCMDEVNKCAAACKDCQRVESSEPPRYVCKDRFTGQPGPMCKPRAEN |
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| Function | Bowman-Birk type bran trypsin inhibitor [UniProtKB/Swiss-Prot:A2WK50] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0124200 | OsNip_01t0124200-02 | Chr01 | 1347665 | 1348723 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGCAACACCACCATGGCTATTTCCACCATCCTTCTCTTCCTCCTCGCCGGCCTCGTCGCCGCCCACGGCGACGGCGACACCATGATCCGTCTCCCAAGCGACGGCGCCGAAGCACCACCACGCCCGCCCAAACCCTGGGACTGCTGCGACAACATCGAGATGTCCCCGCTCGAGATCTTCCCGCCGCTGTACCGCTGCAACGACGAGGTGAAGCAGTGCTCCGCCGCCTGCAAGGAGTGCGTGGAGGCGCCCGGCGACTTCCCCCGCGGCGCCTTCGTGTGCCGCGACTGGTACTCGACGGTGGACCCGGGCCACATGTGCACGGCGCCGGATCAGCCGACGACGAAGAGGCCGTGGAAGTGCTGTGACAGCATCGTGCAGCTGCCGCAGAGGATCTTCCCGCCGTTCTGGCGCTGCGACGACGAGCTGGAGCCCGGCAAGTGCACCGCCGCGTGCAAGTCGTGCAGGGAGGCGCCGGGGCCGTTCCCGGGGCCGCTCATCTGCGAGGACGTCTACTGGGGCGCCGACCCGGGCCCCTTGTGCACGCCGCGGCCATGGGGGAAATGCTGCGACAAGGCCTTCTGCAACAAGATGAACCCGCCGACCTGCCGCTGCATGGACGAGGTGAACAAGTGCGCCGCCGCGTGCAAGGATTGCCAGCGTGTGGAGTCGTCAGAGCCGCCTCGCTACGTCTGCAAGGACCGCTTCACCGGCCAGCCCGGGCCCATGTGCAAACCCCGAGCGGAGAACTAG
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| Protein seq | MSNTTMAISTILLFLLAGLVAAHGDGDTMIRLPSDGAEAPPRPPKPWDCCDNIEMSPLEIFPPLYRCNDEVKQCSAACKECVEAPGDFPRGAFVCRDWYSTVDPGHMCTAPDQPTTKRPWKCCDSIVQLPQRIFPPFWRCDDELEPGKCTAACKSCREAPGPFPGPLICEDVYWGADPGPLCTPRPWGKCCDKAFCNKMNPPTCRCMDEVNKCAAACKDCQRVESSEPPRYVCKDRFTGQPGPMCKPRAEN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.092817 | 4.912501 | 9.019593 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0124401 | RBH | 0.344258 | 0.351745 | 4.217262 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03340 | RBH | 3.602529 | 2.913744 | 2.015415 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0124200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001790 | RBH | 3.994879 | 146.755432 | 8.848381 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001670 | RBH | 1.841401 | 51.584038 | 2.028290 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001790 | RBH | 11.209426 | 168.741882 | 6.657228 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001710 | RBH | 1.671868 | 8.429025 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001790 | RBH | 17.074005 | 285.170410 | 16.400888 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0022500 | SBH | 12.2048265 | 23.5406925 | 17.7103855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001720 | RBH | 1.690557 | 22.514503 | 1.511094 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0022300 | RBH | 149.9181935 | 824.458923 | 5.728838 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001610 | RBH | 0.510125 | 3.134546 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001800 | SBH | 0.000000 | 83.186020 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001830 | RBH | 7.502636 | 270.449219 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001790 | SBH | 0.680526 | 4.891474 | 1.007843 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001690 | RBH | 0.136021 | 12.845947 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001870 | RBH | 0.0 | 52.479660 | 2.426065 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001760 | RBH | 0.0 | 75.982666 | 12.422457 |
