Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0001790 | OGI:01004680 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:1302929-1306246 | ||||||||
| Gene Symbol | RBBI3-2, RBBI3-2, RBBI3-1, RBBI3-1, OsBBTI4, BBTI4, IBP1.1, RBBTI4, APIP4, OsAPIP4, RBBI2-3, RBBI2-3 | ||||||||||
| DNA seq | agttattgacggacatcgatcatatctgcaaggatcagttctgagtgcatggtgtgcacttgggccctggctgtccggtgaactgatccttgcagacgaagcgaggcggctccgacgacgacgccaccggctggcaatccttgcacgcgccgtcgcatgccgccaccttgtcgccgcagctgcagattggagggatcgacttggtgcaggtggtgttgtcgcagcaatccccccacggccgcggcgtgcagaagggacccgggtcggcgccccagtagacgtcgtcgcagatgagcggccccgggaatggccccggcgcctcccggcaagccttgcacgcggcgaagcactggccgggcttgagctcgtcgtcgcagcgccagaacggcgggtggatcctcggcggcagccgccggatgttgtcgcagcacttccacggcctcttcttcgtcgtccgctccggccattcccgctccggcgtgcacggcttgccggggtcctccgtcgagtaccagtcgcggcagacgagggcggcgccgccgccgcagggggagtctccggccgccggcgccgccacgcactccttgcaggcggccgagcactgcttgacctcgtcgttgcagcggtaaagcggcgggaagatctttagcggggacatctcgatatcgtcgcagcagtcccagggtttggcgggctgcggtggtgcgtcgccttcgctggggagacggatggtgtcgccgtgggcggcggcgaggccgccgacggcgaggaggaagagcaggatggtggaagtagccatgctgttgttactcatcttggtttgtggtgttgtgctagtgatgagtcgagtagtttagttattatagatagatagaccaaggaaaaatattctaaactccatagcgatgtccagttgtttgtatgtaacttaggtgatcataatttttttttaaaaaattaacaagataaattaatatgCgatatatcacttTaTaaatatGcaaaaTcaaatctaatttttaCatgttGCAAaaaaaataaatttGactattaatatatgttaactataTgtgtttttaacttGtaattTattttttataactatttaaatagcacgcaagcAacgaacgaacttctacTCTAAAGtctaaatcataaaatcaactaaccataaagctgactTGtgcattgcatGCACgaggataagaggagcacgtggaggtttccattccacgaatatatgcatgcacagaggaatcaattaattaaggaacatgtgcaagaggatgcatgtagacaggatcacaggaatacaggataaagtttttcttcTtttttttttgagaactacaggatagagtttggcgtgcattttgttgggtagctgatagctccatcgttttggagtacatgacagagacatgcatgcatgggttgaccggttgacccatgcatgtgcatgtgatgccatgcagccatttaatatccaccacgtggccggcgatcgagaccgtacgtacatacatacgcttacctgagattgcgatgacacgtagtagtacggccgtgggaattgattaatggggcagatacgagagtgtcctgtgtaaacgcacgcatcgcaTGtgtgcgcgcttggattattgtcgcgggtacatgacacaAGcagcagtctgcgacacgctgttctctctctctctctctctctctctctctctctctctctctctctctctctcgcatgaaatttgacaaattaacacttctaaaatctaatttgaagaatgaactttgtaagaaaaaacatctataactcgataccatagagattgccgtaacagctcggtgccgtcttcttttggcaccaagaaaattgccgaggtgacaaaattaagttcaaattcagcaaggattcagtaccaatatcgttgatgttgaccccatatattatacaagtggcatgtaatattcgTACtactcccttcgccaaaaaaagaatcttaaatgtatatgtaattaatatcgaatcttaaatgttttggtctctacatcatttatctatatttagtaattaatatccatatgaattcggagacatatatgaagcaATatatatgaatctatgtatacatgtattgaaaacccacaacgtcttaaaatgtaaataagacgaagtagtataatatcaatatatgcggcccatgctcaatgagatattgtgttttattattattattttattattattattattattattattattattattattattattattattattattcagcatgtttcttaattttcaatataattgtcctctcagtttactagactggtgcccatgtgatgtgacaggatcacgtttctgATCattttatatgtcgagtagatatatcgctcgctcatatctcttatttatgatattgagacaactcaacatgggtgcatgcttgcgttgcatatattttattttccctcttggtccacacagcgaacagggacaaattaaacacacccacacacatggagcacacaaactaacaaagcatgcaagatgcacaaaagctgcagagcactgaaaaatctggatggagctaagctctagcctctagctataccaactctgaatgatcgaacgaacgatcagctagctgcaagctagggcgagttttattgatggacacacagatcgatcatcgatcatctgtagctagctagttctgggctcggggtttgcacatgggcccGggctggccggtgaagcggtccttgcagacgtagcgaggcggctctgacgactccacacgctggcaatccttgcacgcggcggcgcacttgttcacctcgtccatgcagcggcaggtcggcgggttcatcttgttgcagaaggccttgtcgcagcatttcccccatggccgcggcgtgcacaaggggcccgggtcggcgccccagtagtagacgtcctcgcatgagcggccccgggaacggccccggcgcctccctgcacgacttgcacgcggcggtgcacttgccgggctccagctcgtcgtcgcagcgccagaacggcgggaagatcctctgcggcagctgcacgatgctgtcacagcacttccacggcctcttcgtcgtcggctgatccggcgccgtgcacatgtggcccgggtccaccgtcgagtaccagtcgcggcacacgaaggcgccgcgggggaagtcgccgggcgcctccacgcactccttgcaggcggcggagcactgcttcacctcgtcgttgcagcggtacagcggcgggaagatctcgagcggggacat
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| CDS seq | atgtccccgctcgagatcttcccgccgctgtaccgctgcaacgacgaggtgaagcagtgctccgccgcctgcaaggagtgcgtggaggcgcccggcgacttcccccgcggcgccttcgtgtgccgcgactggtactcgacggtggacccgggccacatgtgcacggcgccggatcagccgacgacgaagaggccgtggaagtgctgtgacagcatcgtgcagctgccgcagaggatcttcccgccgttctggcgctgcgacgacgagctggagcccggcaagtgcaccgccgcgtgcaagtcgtgcagggaggcgccggggccgttcccggggccgctcatgcgaggacgtctactactggggcgccgacccgggccccttgtgcacgccgcggccatgggggaaatgctgcgacaaggccttctgcaacaagatgaacccgccgacctgccgctgcatggacgaggacactctcgtatctgccccattaatcaattcccacggccgtactactacgtgtcatcgcaatctcagatgagtaacaacagcatggctacttccaccatcctgctcttcctcctcgccgtcggcggcctcgccgccgcccacggcgacaccatccgtctccccagcgaaggcgacgcaccaccgcagcccgccaaaccctgggactgctgcgacgatatcgagatgtccccgctaaagatcttcccgccgctttaccgctgcaacgacgaggtcaagcagtgctcggccgcctgcaaggagtgcgtggcggcgccggcggccggagactccccctgcggcggcggcgccgccctcgtctgccgcgactggtactcgacggaggaccccggcaagccgtgcacgccggagcgggaatggccggagcggacgacgaagaagaggccgtggaagtgctgcgacaacatccggcggctgccgccgaggatccacccgccgttctggcgctgcgacgacgagctcaagcccggccagtgcttcgccgcgtgcaaggcttgccgggaggcgccggggccattcccggggccgctcatctgcgacgacgtctactggggcgccgacccgggtcccttctgcacgccgcggccgtggggggattgctgcgacaacaccacctgcaccaagtcgatccctccaatctgcagctgcggcgacaaggtggcggcatgcgacggcgcgtgcaaggattgccagccggtggcgtcgtcgtcggagccgcctcgcttcgtctgcaaggatcagttcaccggacagccagggcccaagtgcacaccatgcactcagaactga
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| Protein seq | MSPLEIFPPLYRCNDEVKQCSAACKECVEAPGDFPRGAFVCRDWYSTVDPGHMCTAPDQPTTKRPWKCCDSIVQLPQRIFPPFWRCDDELEPGKCTAACKSCREAPGPFPGPLMRGRLLLGRRPGPLVHAAAMGEMLRQGLLQQDEPADLPLHGRGHSRICPINQFPRPYYYVSSQSQMSNNSMATSTILLFLLAVGGLAAAHGDTIRLPSEGDAPPQPAKPWDCCDDIEMSPLKIFPPLYRCNDEVKQCSAACKECVAAPAAGDSPCGGGAALVCRDWYSTEDPGKPCTPEREWPERTTKKRPWKCCDNIRRLPPRIHPPFWRCDDELKPGQCFAACKACREAPGPFPGPLICDDVYWGADPGPFCTPRPWGDCCDNTTCTKSIPPICSCGDKVAACDGACKDCQPVASSSEPPRFVCKDQFTGQPGPKCTPCTQN |
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| Function | Bowman-Birk type bran trypsin inhibitor [UniProtKB/Swiss-Prot:Q0JR25] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0001790 | OsLiXu_01g0001790.01 | Chr01 | 1302929 | 1306246 | - | NAM | ||
| CDS seq | atgtccccgctcgagatcttcccgccgctgtaccgctgcaacgacgaggtgaagcagtgctccgccgcctgcaaggagtgcgtggaggcgcccggcgacttcccccgcggcgccttcgtgtgccgcgactggtactcgacggtggacccgggccacatgtgcacggcgccggatcagccgacgacgaagaggccgtggaagtgctgtgacagcatcgtgcagctgccgcagaggatcttcccgccgttctggcgctgcgacgacgagctggagcccggcaagtgcaccgccgcgtgcaagtcgtgcagggaggcgccggggccgttcccggggccgctcatgcgaggacgtctactactggggcgccgacccgggccccttgtgcacgccgcggccatgggggaaatgctgcgacaaggccttctgcaacaagatgaacccgccgacctgccgctgcatggacgaggacactctcgtatctgccccattaatcaattcccacggccgtactactacgtgtcatcgcaatctcagatgagtaacaacagcatggctacttccaccatcctgctcttcctcctcgccgtcggcggcctcgccgccgcccacggcgacaccatccgtctccccagcgaaggcgacgcaccaccgcagcccgccaaaccctgggactgctgcgacgatatcgagatgtccccgctaaagatcttcccgccgctttaccgctgcaacgacgaggtcaagcagtgctcggccgcctgcaaggagtgcgtggcggcgccggcggccggagactccccctgcggcggcggcgccgccctcgtctgccgcgactggtactcgacggaggaccccggcaagccgtgcacgccggagcgggaatggccggagcggacgacgaagaagaggccgtggaagtgctgcgacaacatccggcggctgccgccgaggatccacccgccgttctggcgctgcgacgacgagctcaagcccggccagtgcttcgccgcgtgcaaggcttgccgggaggcgccggggccattcccggggccgctcatctgcgacgacgtctactggggcgccgacccgggtcccttctgcacgccgcggccgtggggggattgctgcgacaacaccacctgcaccaagtcgatccctccaatctgcagctgcggcgacaaggtggcggcatgcgacggcgcgtgcaaggattgccagccggtggcgtcgtcgtcggagccgcctcgcttcgtctgcaaggatcagttcaccggacagccagggcccaagtgcacaccatgcactcagaactga
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| Protein seq | MSPLEIFPPLYRCNDEVKQCSAACKECVEAPGDFPRGAFVCRDWYSTVDPGHMCTAPDQPTTKRPWKCCDSIVQLPQRIFPPFWRCDDELEPGKCTAACKSCREAPGPFPGPLMRGRLLLGRRPGPLVHAAAMGEMLRQGLLQQDEPADLPLHGRGHSRICPINQFPRPYYYVSSQSQMSNNSMATSTILLFLLAVGGLAAAHGDTIRLPSEGDAPPQPAKPWDCCDDIEMSPLKIFPPLYRCNDEVKQCSAACKECVAAPAAGDSPCGGGAALVCRDWYSTEDPGKPCTPEREWPERTTKKRPWKCCDNIRRLPPRIHPPFWRCDDELKPGQCFAACKACREAPGPFPGPLICDDVYWGADPGPFCTPRPWGDCCDNTTCTKSIPPICSCGDKVAACDGACKDCQPVASSSEPPRFVCKDQFTGQPGPKCTPCTQN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0001790 | OsLiXu_01g0001790.02 | Chr01 | 1305374 | 1305847 | - | IsoSeq | ||
| CDS seq | ggggaaatgctgcgacaaggccttctgcaacaagatgaacccgccgacctgccgctgcatggacgaggtgaacaagtgcgccgccgcgtgcaaggattgccagcgtgtggagtcgtcagagccgcctcgctacgtctgcaaggaccgcttcaccggccagccCgggcccatgtgcaaaccccgagcccagaactagctagctac
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| Protein seq | GEMLRQGLLQQDEPADLPLHGRGEQVRRRVQGLPACGVVRAASLRLQGPLHRPARAHVQTPSPELASY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.680526 | 4.891474 | 1.007843 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0124100 | RBH | 0.519825 | 0.0 | 1.283261 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03330 | RBH | 0.175483 | 0.0 | 0.164902 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0124100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001790 | RBH | 3.994879 | 146.755432 | 8.848381 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001660 | RBH | 0.0 | 2.532909 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001780 | RBH | 0.517378 | 8.207623 | 2.149283 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001710 | RBH | 1.671868 | 8.429025 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001780 | RBH | 0.0 | 19.089596 | 3.431444 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0022500 | RBH | 12.2048265 | 23.5406925 | 17.7103855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001720 | RBH | 1.690557 | 22.514503 | 1.511094 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0022300 | RBH | 149.9181935 | 824.458923 | 5.728838 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001610 | RBH | 0.510125 | 3.134546 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001800 | SBH | 0.000000 | 83.186020 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001830 | RBH | 7.502636 | 270.449219 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0000220 | RBH | 2.059803 | 0.0 | 1.592158 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001690 | RBH | 0.136021 | 12.845947 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001880 | RBH | 0.0 | 3.828459 | 0.095689 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001750 | SBH | 76.036285 | 32.512402 | 3.995320 |
