Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0001780 | OGI:01004680 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:1354712-1355525 | ||||||||
| Gene Symbol | RBBI3-2, RBBI3-2 | ||||||||||
| DNA seq | agttattgacggacatcgatcatatctgcaaggatcagttctgagtgcatggtgtgcacttgggccctggctgtccggtgaactgatccttgcagacgaagcgaggcggctccgacgacgacgccaccggctggcaatccttgcacgcgccgtcgcatgccgccaccttgtcgccgcagctgcagattggagggatcgacttggtgcaggtggtgttgtcgcagcaatccccccacggccgcggcgtgcagaagggacccgggtcggcgccccagtagacgtcgtcgcagatgagcggccccgggaatggccccggcgcctcccggcaagccttgcacgcggcgaagcactggccgggcttgagctcgtcgtcgcagcgccagaacggcgggtggatcctcggcggcagccgccggatgttgtcgcagcacttccacggcctcttcttcgtcgtccgctccggccattcccgctccggcgtgcacggcttgccggggtcctccgtcgagtaccagtcgcggcagacgagggcggcgccgccgccgcagggggagtctccggccgccggcgccgccacgcactccttgcaggcggccgagcactgcttgacctcgtcgttgcagcggtaaagcggcgggaagatctttagcggggacatctcgatatcgtcgcagcagtcccagggtttggcgggctgcggtggtgcgtcgccttcgctggggagacggatggtgtcgccgtgggcggcggcgaggccgccgacggcgaggaggaagagcaggatggtggaagtagccatgctgttgttactcat
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| CDS seq | atgagtaacaacagcatggctacttccaccatcctgctcttcctcctcgccgtcggcggcctcgccgccgcccacggcgacaccatccgtctccccagcgaaggcgacgcaccaccgcagcccgccaaaccctgggactgctgcgacgatatcgagatgtccccgctaaagatcttcccgccgctttaccgctgcaacgacgaggtcaagcagtgctcggccgcctgcaaggagtgcgtggcggcgccggcggccggagactccccctgcggcggcggcgccgccctcgtctgccgcgactggtactcgacggaggaccccggcaagccgtgcacgccggagcgggaatggccggagcggacgacgaagaagaggccgtggaagtgctgcgacaacatccggcggctgccgccgaggatccacccgccgttctggcgctgcgacgacgagctcaagcccggccagtgcttcgccgcgtgcaaggcttgccgggaggcgccggggccattcccggggccgctcatctgcgacgacgtctactggggcgccgacccgggtcccttctgcacgccgcggccgtggggggattgctgcgacaacaccacctgcaccaagtcgatccctccaatctgcagctgcggcgacaaggtggcggcatgcgacggcgcgtgcaaggattgccagccggtggcgtcgtcgtcggagccgcctcgcttcgtctgcaaggatcagttcaccggacagccagggcccaagtgcacaccatgcactcagaactga
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| Protein seq | MSNNSMATSTILLFLLAVGGLAAAHGDTIRLPSEGDAPPQPAKPWDCCDDIEMSPLKIFPPLYRCNDEVKQCSAACKECVAAPAAGDSPCGGGAALVCRDWYSTEDPGKPCTPEREWPERTTKKRPWKCCDNIRRLPPRIHPPFWRCDDELKPGQCFAACKACREAPGPFPGPLICDDVYWGADPGPFCTPRPWGDCCDNTTCTKSIPPICSCGDKVAACDGACKDCQPVASSSEPPRFVCKDQFTGQPGPKCTPCTQN |
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| Function | Bowman-Birk type bran trypsin inhibitor [UniProtKB/Swiss-Prot:Q0JR25] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0001780 | OsCMeo_01g0001780.01 | Chr01 | 1354712 | 1355525 | - | NAM | ||
| CDS seq | atgagtaacaacagcatggctacttccaccatcctgctcttcctcctcgccgtcggcggcctcgccgccgcccacggcgacaccatccgtctccccagcgaaggcgacgcaccaccgcagcccgccaaaccctgggactgctgcgacgatatcgagatgtccccgctaaagatcttcccgccgctttaccgctgcaacgacgaggtcaagcagtgctcggccgcctgcaaggagtgcgtggcggcgccggcggccggagactccccctgcggcggcggcgccgccctcgtctgccgcgactggtactcgacggaggaccccggcaagccgtgcacgccggagcgggaatggccggagcggacgacgaagaagaggccgtggaagtgctgcgacaacatccggcggctgccgccgaggatccacccgccgttctggcgctgcgacgacgagctcaagcccggccagtgcttcgccgcgtgcaaggcttgccgggaggcgccggggccattcccggggccgctcatctgcgacgacgtctactggggcgccgacccgggtcccttctgcacgccgcggccgtggggggattgctgcgacaacaccacctgcaccaagtcgatccctccaatctgcagctgcggcgacaaggtggcggcatgcgacggcgcgtgcaaggattgccagccggtggcgtcgtcgtcggagccgcctcgcttcgtctgcaaggatcagttcaccggacagccagggcccaagtgcacaccatgcactcagaactga
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| Protein seq | MSNNSMATSTILLFLLAVGGLAAAHGDTIRLPSEGDAPPQPAKPWDCCDDIEMSPLKIFPPLYRCNDEVKQCSAACKECVAAPAAGDSPCGGGAALVCRDWYSTEDPGKPCTPEREWPERTTKKRPWKCCDNIRRLPPRIHPPFWRCDDELKPGQCFAACKACREAPGPFPGPLICDDVYWGADPGPFCTPRPWGDCCDNTTCTKSIPPICSCGDKVAACDGACKDCQPVASSSEPPRFVCKDQFTGQPGPKCTPCTQN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.517378 | 8.207623 | 2.149283 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0124100 | RBH | 0.519825 | 0.0 | 1.283261 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03330 | RBH | 0.175483 | 0.0 | 0.164902 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0124100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001780 | RBH | 0.0 | 7.731150 | 2.062331 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001660 | RBH | 0.0 | 2.532909 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001790 | SBH | 11.209426 | 168.741882 | 6.657228 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001700 | RBH | 0.0 | 0.554908 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001780 | RBH | 0.0 | 19.089596 | 3.431444 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0022500 | SBH | 12.2048265 | 23.5406925 | 17.7103855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001710 | RBH | 0.0 | 2.814924 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0022200 | RBH | 8.0432555 | 43.642063 | 0.1491745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001600 | RBH | 0.0 | 0.213531 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001800 | SBH | 0.000000 | 83.186020 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001820 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001790 | RBH | 0.680526 | 4.891474 | 1.007843 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001690 | SBH | 0.136021 | 12.845947 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001850 | RBH | 0.201004 | 4.614030 | 1.914610 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001750 | SBH | 76.036285 | 32.512402 | 3.995320 |
