Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_01g0116800 OGI:01002250 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr01:935574-936704
Gene Symbol RLCK10, OsRLCK10, RLCK13, OsRLCK13, RLCK18, OsRLCK18
DNA seq

TTACTGGTAGCTAAAGCTCTGAAACAGGCTAATGCTTTCGTCGTCATCGTCCTCTTCAGCTTCAGAGATTGCAGTCAGATCAGATGACAGATGGTAAGGCTCTACTCCAAGGGGTTGCTCATCATCACAGAAGAATGGCTTGGGAGGAACTTGGAGATCATCGCTGCCACCTTCAAGCATCTCTATCACCTCGCTCATCGTCGGTCGATCAGATGACCTCATCTGAATGCACCGTAATCCAACAACGCAAAGCTCCTTCTCCAGCTCATGCATGTCGACAATGTCAGAGATCTCACATGTTTCTCGTCGAGTCAACTGCTTGTACACCCGGGATGGATAGTATGCCTGACTTGAGTTTGCTGCATTCGGATCTGCATTTCTTCTTCCTCCGGCCATTTCTAGTAGCAGCATCCCAAAGCTATACACATCAGATTTGCTTGATATGGTACCAAAGCTCCGAGAGATCATCTCAGGAGCTATGTAACCCACTGTTCCTCGTGCAGCGCTCACTGGGACAAAGCTCTTATCTCTTGGGTACAGCTTGGCAAGGCCAAAATCGGCAACTTTTGGGACAAAGTTATCATCAAGAAGGATGTTGTGAGGCTTGATGTCAAAGTGCAGAATCTGCATCTCGCACCCCTGATGCAGGTAGTTGATCCCTCTTGCAATGCCCAAAGCGATCTCATTCAGCTTGTCCCAGGAGAAACACTTCTCTAATGAGAAGATGTATTTATCAAGAGAGCCCCGAGGCATGTACTCATAGACGAGCGCTCTTCTCATTTCTTCCGAGCAGAATCCGACCAGACGCACTACATTGATATGGTGGATCCGACCGATGGTGGAGACCTCACTAATGAATTCATCTCCGTTGCAGTTGGAGTTACCGGACAACATCTTGATGGCAACATGTACATTGCCGGGGAGCAGTACGCCTTTATATACAGAGCCATAGCCTCCTTGTCCTAGCTTGTCTCGAAAATGGGATGTGATTGCAATGATGTCAGTGTAGGCGTACCTCATTGGACCAATCATCTGTTGCATCTGGAGAAACTTCTCTACCGCATCGATTGTGATCCTTGTTTTCCAGTACTTGTGGGCAAGGAAGATGAATACCACCAGCGGCGCCAACAT

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CDS seq

ATGTTGGCGCCGCTGGTGGTATTCATCTTCCTTGCCCACAAGTACTGGAAAACAAGGATCACAATCGATGCGGTAGAGAAGTTTCTCCAGATGCAACAGATGATTGGTCCAATGAGGTACGCCTACACTGACATCATTGCAATCACATCCCATTTTCGAGACAAGCTAGGACAAGGAGGCTATGGCTCTGTATATAAAGGCGTACTGCTCCCCGGCAATGTACATGTTGCCATCAAGATGTTGTCCGGTAACTCCAACTGCAACGGAGATGAATTCATTAGTGAGGTCTCCACCATCGGTCGGATCCACCATATCAATGTAGTGCGTCTGGTCGGATTCTGCTCGGAAGAAATGAGAAGAGCGCTCGTCTATGAGTACATGCCTCGGGGCTCTCTTGATAAATACATCTTCTCATTAGAGAAGTGTTTCTCCTGGGACAAGCTGAATGAGATCGCTTTGGGCATTGCAAGAGGGATCAACTACCTGCATCAGGGGTGCGAGATGCAGATTCTGCACTTTGACATCAAGCCTCACAACATCCTTCTTGATGATAACTTTGTCCCAAAAGTTGCCGATTTTGGCCTTGCCAAGCTGTACCCAAGAGATAAGAGCTTTGTCCCAGTGAGCGCTGCACGAGGAACAGTGGGTTACATAGCTCCTGAGATGATCTCTCGGAGCTTTGGTACCATATCAAGCAAATCTGATGTGTATAGCTTTGGGATGCTGCTACTAGAAATGGCCGGAGGAAGAAGAAATGCAGATCCGAATGCAGCAAACTCAAGTCAGGCATACTATCCATCCCGGGTGTACAAGCAGTTGACTCGACGAGAAACATGTGAGATCTCTGACATTGTCGACATGCATGAGCTGGAGAAGGAGCTTTGCGTTGTTGGATTACGGTGCATTCAGATGAGGTCATCTGATCGACCGACGATGAGCGAGGTGATAGAGATGCTTGAAGGTGGCAGCGATGATCTCCAAGTTCCTCCCAAGCCATTCTTCTGTGATGATGAGCAACCCCTTGGAGTAGAGCCTTACCATCTGTCATCTGATCTGACTGCAATCTCTGAAGCTGAAGAGGACGATGACGACGAAAGCATTAGCCTGTTTCAGAGCTTTAGCTACCAGTAA

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Protein seq

MLAPLVVFIFLAHKYWKTRITIDAVEKFLQMQQMIGPMRYAYTDIIAITSHFRDKLGQGGYGSVYKGVLLPGNVHVAIKMLSGNSNCNGDEFISEVSTIGRIHHINVVRLVGFCSEEMRRALVYEYMPRGSLDKYIFSLEKCFSWDKLNEIALGIARGINYLHQGCEMQILHFDIKPHNILLDDNFVPKVADFGLAKLYPRDKSFVPVSAARGTVGYIAPEMISRSFGTISSKSDVYSFGMLLLEMAGGRRNADPNAANSSQAYYPSRVYKQLTRRETCEISDIVDMHELEKELCVVGLRCIQMRSSDRPTMSEVIEMLEGGSDDLQVPPKPFFCDDEQPLGVEPYHLSSDLTAISEAEEDDDDESISLFQSFSYQ

Function Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_01g0116800 OsNip_01t0116800-00 Chr01 935574 936704 - RAP2018-11-26
CDS seq

ATGTTGGCGCCGCTGGTGGTATTCATCTTCCTTGCCCACAAGTACTGGAAAACAAGGATCACAATCGATGCGGTAGAGAAGTTTCTCCAGATGCAACAGATGATTGGTCCAATGAGGTACGCCTACACTGACATCATTGCAATCACATCCCATTTTCGAGACAAGCTAGGACAAGGAGGCTATGGCTCTGTATATAAAGGCGTACTGCTCCCCGGCAATGTACATGTTGCCATCAAGATGTTGTCCGGTAACTCCAACTGCAACGGAGATGAATTCATTAGTGAGGTCTCCACCATCGGTCGGATCCACCATATCAATGTAGTGCGTCTGGTCGGATTCTGCTCGGAAGAAATGAGAAGAGCGCTCGTCTATGAGTACATGCCTCGGGGCTCTCTTGATAAATACATCTTCTCATTAGAGAAGTGTTTCTCCTGGGACAAGCTGAATGAGATCGCTTTGGGCATTGCAAGAGGGATCAACTACCTGCATCAGGGGTGCGAGATGCAGATTCTGCACTTTGACATCAAGCCTCACAACATCCTTCTTGATGATAACTTTGTCCCAAAAGTTGCCGATTTTGGCCTTGCCAAGCTGTACCCAAGAGATAAGAGCTTTGTCCCAGTGAGCGCTGCACGAGGAACAGTGGGTTACATAGCTCCTGAGATGATCTCTCGGAGCTTTGGTACCATATCAAGCAAATCTGATGTGTATAGCTTTGGGATGCTGCTACTAGAAATGGCCGGAGGAAGAAGAAATGCAGATCCGAATGCAGCAAACTCAAGTCAGGCATACTATCCATCCCGGGTGTACAAGCAGTTGACTCGACGAGAAACATGTGAGATCTCTGACATTGTCGACATGCATGAGCTGGAGAAGGAGCTTTGCGTTGTTGGATTACGGTGCATTCAGATGAGGTCATCTGATCGACCGACGATGAGCGAGGTGATAGAGATGCTTGAAGGTGGCAGCGATGATCTCCAAGTTCCTCCCAAGCCATTCTTCTGTGATGATGAGCAACCCCTTGGAGTAGAGCCTTACCATCTGTCATCTGATCTGACTGCAATCTCTGAAGCTGAAGAGGACGATGACGACGAAAGCATTAGCCTGTTTCAGAGCTTTAGCTACCAGTAA

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Protein seq

MLAPLVVFIFLAHKYWKTRITIDAVEKFLQMQQMIGPMRYAYTDIIAITSHFRDKLGQGGYGSVYKGVLLPGNVHVAIKMLSGNSNCNGDEFISEVSTIGRIHHINVVRLVGFCSEEMRRALVYEYMPRGSLDKYIFSLEKCFSWDKLNEIALGIARGINYLHQGCEMQILHFDIKPHNILLDDNFVPKVADFGLAKLYPRDKSFVPVSAARGTVGYIAPEMISRSFGTISSKSDVYSFGMLLLEMAGGRRNADPNAANSSQAYYPSRVYKQLTRRETCEISDIVDMHELEKELCVVGLRCIQMRSSDRPTMSEVIEMLEGGSDDLQVPPKPFFCDDEQPLGVEPYHLSSDLTAISEAEEDDDDESISLFQSFSYQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.221375 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0117600 SBH 0.535478 0.602221 2.783528
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g02730 RBH 0.338936 0.462002 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os01g0116800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0001100 RBH 0.094304 5.570498 1.005969
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0001070 RBH 0.160955 0.171025 0.792215
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0001230 RBH 0.875923 0.000000 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0001170 RBH 0.015936 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0001130 RBH 6.059460 0.0 0.766095
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0013100 SBH 4.8139025 5.8982375 6.5225565
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0001050 RBH 0.037199 0.353644 0.989798
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0015200 SBH 1.617323 0.890693 1.779883
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0001050 SBH 0.235434 0.054611 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0001140 SBH 0.000000 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0001060 SBH 1.753116 7.529719 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0001070 SBH 0.000000 0.053169 0.051272
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0001130 SBH 0.151789 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G001240 SBH 0.900158 1.196784 0.692669
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0001140 SBH 3.493958 2.049984 1.707907
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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