Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNip_01g0116800 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:935574-936704 | ||||||||
Gene Symbol | RLCK10, OsRLCK10, RLCK13, OsRLCK13, RLCK18, OsRLCK18 | ||||||||||
DNA seq | TTACTGGTAGCTAAAGCTCTGAAACAGGCTAATGCTTTCGTCGTCATCGTCCTCTTCAGCTTCAGAGATTGCAGTCAGATCAGATGACAGATGGTAAGGCTCTACTCCAAGGGGTTGCTCATCATCACAGAAGAATGGCTTGGGAGGAACTTGGAGATCATCGCTGCCACCTTCAAGCATCTCTATCACCTCGCTCATCGTCGGTCGATCAGATGACCTCATCTGAATGCACCGTAATCCAACAACGCAAAGCTCCTTCTCCAGCTCATGCATGTCGACAATGTCAGAGATCTCACATGTTTCTCGTCGAGTCAACTGCTTGTACACCCGGGATGGATAGTATGCCTGACTTGAGTTTGCTGCATTCGGATCTGCATTTCTTCTTCCTCCGGCCATTTCTAGTAGCAGCATCCCAAAGCTATACACATCAGATTTGCTTGATATGGTACCAAAGCTCCGAGAGATCATCTCAGGAGCTATGTAACCCACTGTTCCTCGTGCAGCGCTCACTGGGACAAAGCTCTTATCTCTTGGGTACAGCTTGGCAAGGCCAAAATCGGCAACTTTTGGGACAAAGTTATCATCAAGAAGGATGTTGTGAGGCTTGATGTCAAAGTGCAGAATCTGCATCTCGCACCCCTGATGCAGGTAGTTGATCCCTCTTGCAATGCCCAAAGCGATCTCATTCAGCTTGTCCCAGGAGAAACACTTCTCTAATGAGAAGATGTATTTATCAAGAGAGCCCCGAGGCATGTACTCATAGACGAGCGCTCTTCTCATTTCTTCCGAGCAGAATCCGACCAGACGCACTACATTGATATGGTGGATCCGACCGATGGTGGAGACCTCACTAATGAATTCATCTCCGTTGCAGTTGGAGTTACCGGACAACATCTTGATGGCAACATGTACATTGCCGGGGAGCAGTACGCCTTTATATACAGAGCCATAGCCTCCTTGTCCTAGCTTGTCTCGAAAATGGGATGTGATTGCAATGATGTCAGTGTAGGCGTACCTCATTGGACCAATCATCTGTTGCATCTGGAGAAACTTCTCTACCGCATCGATTGTGATCCTTGTTTTCCAGTACTTGTGGGCAAGGAAGATGAATACCACCAGCGGCGCCAACAT
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CDS seq | ATGTTGGCGCCGCTGGTGGTATTCATCTTCCTTGCCCACAAGTACTGGAAAACAAGGATCACAATCGATGCGGTAGAGAAGTTTCTCCAGATGCAACAGATGATTGGTCCAATGAGGTACGCCTACACTGACATCATTGCAATCACATCCCATTTTCGAGACAAGCTAGGACAAGGAGGCTATGGCTCTGTATATAAAGGCGTACTGCTCCCCGGCAATGTACATGTTGCCATCAAGATGTTGTCCGGTAACTCCAACTGCAACGGAGATGAATTCATTAGTGAGGTCTCCACCATCGGTCGGATCCACCATATCAATGTAGTGCGTCTGGTCGGATTCTGCTCGGAAGAAATGAGAAGAGCGCTCGTCTATGAGTACATGCCTCGGGGCTCTCTTGATAAATACATCTTCTCATTAGAGAAGTGTTTCTCCTGGGACAAGCTGAATGAGATCGCTTTGGGCATTGCAAGAGGGATCAACTACCTGCATCAGGGGTGCGAGATGCAGATTCTGCACTTTGACATCAAGCCTCACAACATCCTTCTTGATGATAACTTTGTCCCAAAAGTTGCCGATTTTGGCCTTGCCAAGCTGTACCCAAGAGATAAGAGCTTTGTCCCAGTGAGCGCTGCACGAGGAACAGTGGGTTACATAGCTCCTGAGATGATCTCTCGGAGCTTTGGTACCATATCAAGCAAATCTGATGTGTATAGCTTTGGGATGCTGCTACTAGAAATGGCCGGAGGAAGAAGAAATGCAGATCCGAATGCAGCAAACTCAAGTCAGGCATACTATCCATCCCGGGTGTACAAGCAGTTGACTCGACGAGAAACATGTGAGATCTCTGACATTGTCGACATGCATGAGCTGGAGAAGGAGCTTTGCGTTGTTGGATTACGGTGCATTCAGATGAGGTCATCTGATCGACCGACGATGAGCGAGGTGATAGAGATGCTTGAAGGTGGCAGCGATGATCTCCAAGTTCCTCCCAAGCCATTCTTCTGTGATGATGAGCAACCCCTTGGAGTAGAGCCTTACCATCTGTCATCTGATCTGACTGCAATCTCTGAAGCTGAAGAGGACGATGACGACGAAAGCATTAGCCTGTTTCAGAGCTTTAGCTACCAGTAA
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Protein seq | MLAPLVVFIFLAHKYWKTRITIDAVEKFLQMQQMIGPMRYAYTDIIAITSHFRDKLGQGGYGSVYKGVLLPGNVHVAIKMLSGNSNCNGDEFISEVSTIGRIHHINVVRLVGFCSEEMRRALVYEYMPRGSLDKYIFSLEKCFSWDKLNEIALGIARGINYLHQGCEMQILHFDIKPHNILLDDNFVPKVADFGLAKLYPRDKSFVPVSAARGTVGYIAPEMISRSFGTISSKSDVYSFGMLLLEMAGGRRNADPNAANSSQAYYPSRVYKQLTRRETCEISDIVDMHELEKELCVVGLRCIQMRSSDRPTMSEVIEMLEGGSDDLQVPPKPFFCDDEQPLGVEPYHLSSDLTAISEAEEDDDDESISLFQSFSYQ |
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Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNip_01g0116800 | OsNip_01t0116800-00 | Chr01 | 935574 | 936704 | - | RAP2018-11-26 | ||
CDS seq | ATGTTGGCGCCGCTGGTGGTATTCATCTTCCTTGCCCACAAGTACTGGAAAACAAGGATCACAATCGATGCGGTAGAGAAGTTTCTCCAGATGCAACAGATGATTGGTCCAATGAGGTACGCCTACACTGACATCATTGCAATCACATCCCATTTTCGAGACAAGCTAGGACAAGGAGGCTATGGCTCTGTATATAAAGGCGTACTGCTCCCCGGCAATGTACATGTTGCCATCAAGATGTTGTCCGGTAACTCCAACTGCAACGGAGATGAATTCATTAGTGAGGTCTCCACCATCGGTCGGATCCACCATATCAATGTAGTGCGTCTGGTCGGATTCTGCTCGGAAGAAATGAGAAGAGCGCTCGTCTATGAGTACATGCCTCGGGGCTCTCTTGATAAATACATCTTCTCATTAGAGAAGTGTTTCTCCTGGGACAAGCTGAATGAGATCGCTTTGGGCATTGCAAGAGGGATCAACTACCTGCATCAGGGGTGCGAGATGCAGATTCTGCACTTTGACATCAAGCCTCACAACATCCTTCTTGATGATAACTTTGTCCCAAAAGTTGCCGATTTTGGCCTTGCCAAGCTGTACCCAAGAGATAAGAGCTTTGTCCCAGTGAGCGCTGCACGAGGAACAGTGGGTTACATAGCTCCTGAGATGATCTCTCGGAGCTTTGGTACCATATCAAGCAAATCTGATGTGTATAGCTTTGGGATGCTGCTACTAGAAATGGCCGGAGGAAGAAGAAATGCAGATCCGAATGCAGCAAACTCAAGTCAGGCATACTATCCATCCCGGGTGTACAAGCAGTTGACTCGACGAGAAACATGTGAGATCTCTGACATTGTCGACATGCATGAGCTGGAGAAGGAGCTTTGCGTTGTTGGATTACGGTGCATTCAGATGAGGTCATCTGATCGACCGACGATGAGCGAGGTGATAGAGATGCTTGAAGGTGGCAGCGATGATCTCCAAGTTCCTCCCAAGCCATTCTTCTGTGATGATGAGCAACCCCTTGGAGTAGAGCCTTACCATCTGTCATCTGATCTGACTGCAATCTCTGAAGCTGAAGAGGACGATGACGACGAAAGCATTAGCCTGTTTCAGAGCTTTAGCTACCAGTAA
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Protein seq | MLAPLVVFIFLAHKYWKTRITIDAVEKFLQMQQMIGPMRYAYTDIIAITSHFRDKLGQGGYGSVYKGVLLPGNVHVAIKMLSGNSNCNGDEFISEVSTIGRIHHINVVRLVGFCSEEMRRALVYEYMPRGSLDKYIFSLEKCFSWDKLNEIALGIARGINYLHQGCEMQILHFDIKPHNILLDDNFVPKVADFGLAKLYPRDKSFVPVSAARGTVGYIAPEMISRSFGTISSKSDVYSFGMLLLEMAGGRRNADPNAANSSQAYYPSRVYKQLTRRETCEISDIVDMHELEKELCVVGLRCIQMRSSDRPTMSEVIEMLEGGSDDLQVPPKPFFCDDEQPLGVEPYHLSSDLTAISEAEEDDDDESISLFQSFSYQ
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.000000 | 0.221375 | 0.000000 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0117600 | SBH | 0.535478 | 0.602221 | 2.783528 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02730 | RBH | 0.338936 | 0.462002 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0116800 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001100 | RBH | 0.094304 | 5.570498 | 1.005969 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001070 | RBH | 0.160955 | 0.171025 | 0.792215 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001230 | RBH | 0.875923 | 0.000000 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001170 | RBH | 0.015936 | 0.000000 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001130 | RBH | 6.059460 | 0.0 | 0.766095 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0013100 | SBH | 4.8139025 | 5.8982375 | 6.5225565 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001050 | RBH | 0.037199 | 0.353644 | 0.989798 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015200 | SBH | 1.617323 | 0.890693 | 1.779883 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001050 | SBH | 0.235434 | 0.054611 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001140 | SBH | 0.000000 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001060 | SBH | 1.753116 | 7.529719 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001070 | SBH | 0.000000 | 0.053169 | 0.051272 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001130 | SBH | 0.151789 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001240 | SBH | 0.900158 | 1.196784 | 0.692669 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001140 | SBH | 3.493958 | 2.049984 | 1.707907 |