Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsLima_01g0001050 | OGI:01002250 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:714233-742519 | ||||||||
Gene Symbol | RLCK5, OsRLCK5, RLCK7, OsRLCK7, RLCK10, OsRLCK10, Os8Tak2, YK21, OsRLCK12, RLCK12, RLCK13, OsRLCK13, RLCK16, OsRLCK16, RLCK18, OsRLCK18 | ||||||||||
DNA seq | aaaaatttaagtactagcactttcagccataattcagtactactttctcatggtagaaaatacaactttatcatatgcaaaaataaatagcataccacaagatcacattttcttgctcctgctttatactctgttattccctaaaacaagataacttccaaatttcaacaatgccaagggaacatatctgtttacaacaatatgtagcctcagcgttttacaacttacttaccacctttcctatttggcatcaaagcacatgcacaagcttcactcatcctcctctgagatttcagttagttcagaggagaaacggcaagaatccactagcaatggcaggggttcatcatcgcagaagaatggccttgaaggcagctgcagaccatcaacatcaccttcaagcatttctatgacctcactcatcgttggacgatcaggaggcttcatttgaatgcaatgtagaccaacaacacacaacttcttttccagctcatgcatattgaaggcattggcaatctcacccatcttttgttgaaccagctgattatacacccaagatggataatatgactggcttgagctcgacatatcctgcttagagttccttcgccctccagccatctccaacagaagcatcccaaagctataaacatcagatttgctagatatgacaccaaagctccgagatatcatctcaggagcaatataacctactgttcctcgtgcagcgctaactggcacaaaactgttatcctgtggatacagtttggcgaggccaaaatcggcaacttttgggacgaaattgctatcaagaaggatgttgtgcagcttgatatcaaaatgtagaatctgcatatcacacccctgatgtaagtagtttattcctctagcaatgcccaatgcgatctcattgagcttgtcccaagagagactcttgtcaggagagaagatgaacctgtcaagagatccatggggcatgtactcatacacaagtgctctcctcatttcctctgcacaataccccactagacgtactacattgacatgatggatactgccaatggtggatacctcgctgatgaattcttctccattacaattgtagttggccagcattttgatggcaacatggacatcaccaggcagtatcactcccttgaacacggatccatagccaccctggcccaacttgtctctaaaatggcttgtcattgcaatgatgtctgtataggcgtaccttgttggaccaagcattagctgcattcgtaaaaacttctcaactgcgtcgatttttattctagttttccaatacttgaaggcaaggaaggtcaatagtgtcaacggagctatcacgaacctgcataaaactgcataaaaaaacaagtttacataaacagtgataacctttagtaaatgtgtctttagacattggaacggtgcagtggtgattatgtactgtataattaagaagacagaatcgtagaagtaccagcaatccacttgaaaacaaacaaagcaaattgtacaatgaatccgccataaaattctatttttccacgaagcatccccatcatgtattgtggcatatcgaaataatctttcatgcccactcctctaattatgcaggaccagaaactaaagtcaataaaaagcatgtccacaatctgatccttgatggtttgattggacaatggttcttcatgaaatcccctgcaaggccgtgacatggtagagaaaagaatggcttagagagcgtaacaattgttttaagacaaatatgtactcaagtttatgtatgaatgcattctcgaaaaagtgtatgtatgaatgtaatggaacaacacccgaaactcaccgaatcgaccccatcagacaatccttgatgtgcccaatcctactccacctatgtattatgggaaaatgaacagcaaatccattcctcatggatctgacgatgtctgaaaagcttgcattatgtggcaatggcgagtcccaaccacccaagggaatcatggcaaggtagcgacatgaagtctcaaggtttccgatgattggaaaaacagatggaggcattatccaggaaccaaacacataaacaaacgaagagcttgtgctcaggcaatcaacaggaacgtacacactattgttccttactgcctgtgaacaattcacaaagctaacccatgtagctccaggtccagggtcaagggccaggtcccagccgccatgtgatccctggataccccccgaaacgaaaggaagctgatccgagcgaggaagagggcagctgctgtttgtatctttcaggctggcatccacaacccagaagacagaagtagtgtagttgatgctggttacatagtatgtccctgtgttgatcctaatggtagccttgctatcgctgcaatctaactcatatgacggaacaccgcacctttgtggatcacctcgccggcggaaaggatgggaaatgttctggagatgtccacaggagaaaggatagcacccttgccgcccctcgacatctcctgcaagagcaagaacagcaaagatgaaaacaaaggcttgcattgtggtagagaggggatgcatgctactcgctcagcccacaaggacaaggttggctaaccaagacaagtgcttatgttggctgctgcatatgatccgtgttccgtgattttgttgactaatccagaccatattgcaattagtcaatattaaattcttccacagtctctgatagagatggggcagggatggaccgaccgaagtatctgatagagtaaagccaaattcgtagtaccaaactttgactaactttcgctacaaaataggagtatatgattgattgccccccccccccccccccctgttattgtagcaaccggtgatcatacagccttcctgctctctctattctgtttgcagtcctcttcaccctaattttctatgcacctccggccgttgcagtacacacacagagagagagagagatgggtactgttctcgcaacagccttcctgctctctgttctcagccatggcacctactacatagccatggcttcttcatcttgggatgaccaagacttcttcaggcattgtccaccgtcccggtgcagcgacggtggaccagagatccggttccctcaccggctgcaatccagcaacacaccatcatcatgcgacagttcacacgccaagctaatatgctctggccaggacaccatcctacatcacccatttctgggcccttgcaaggtgactgccatagattacaagaaggctgtcatgaagatcatcccgtttgggggctcatcttctccatgcctgcttcacaagttcaattccacaaatctatcagctgatgtcaacgatcagaatcaattatacctcactgaacctgggagaatagtgcgttgttcaaaagagttcacaacaagtagagcttctatgatcgacggctacaaaactgttattgccgataaagttgtccgcttgatcccctgcctaagcgacaccacaagccacttctcatatttggtgtctacttggctgtacctgtatgcgcttccattggactgcatggtcgtctcaaaaggcaacattccaatccccagtccatacgctggtttaacgttcaagcaaatggcagaaaggataatcaactctgctgagatcactcttgatttgggtctcgggagcattccctacaattgcgtgcggtgtgaacggcaagggcaacactgcgcattcagctcacaaagaaatcaaacattctgcatgcatcacggtaccattctaacaatacccacccacacacatatagctttatttcctacaatagttaagctcttgcatttgatccacccatacagtactaccttttgaaacttctaggagatgagttgcaaaattattttgcaaactagtagtacaaaccatttgaatatgtgactgtaactatttaatcattctttacaattctcatagatatctcaaaaaagaagtggccaatggagaataatgtttgctcaactagcaacaatcagacacaatgattataaatttacatcttctcatagatatgcagctacaatcaacaccattgtactgctaatgaaaaggacccgaaagcaaaagtaacttaacttaagtaacaaaagactcctacaattagaaaatctaaaggttaagtaagcatacaacacaactaatcttacatgttctgatgataatcatgattctgctgtcttgagtacagaagactgcagttgatgatactgtgctgagcttttgcacaatcagatatacacacactaggagaagttatctatcacATatatatttgcataatcaaagtacagttgtaaccccaaaactaaaactctatgatatcccacagggtccatatttttctgcaatgtcgtaggtctatgctgggtttacattttttcaagagtaaatttctattttatctgtaaaccatcaaatagatcttattgtctgctttggtatttgcaggttcacgcgtcaaagtcattgcaggtactattgcaatccaaacctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagcaggagttctgctggatatattaagaaggagaagcaaagtgttcgagcaatagtcgttattacatggctaaataagccaactggaggaaggcaggattaagcaaacctatctttttattcacaagaaaaaaatgaaataaacaaagttatctgtagcagataaaatagttgttgatggctgctctaactacattcttctgataaaaagacactgcgttcttttatacccatcaagataagccactcactatgggataattttctgccctgatgcaaaatgctgatttcttattctatttactcagcaacatcagtagctgcatttgttgctgtttcattggtggtggctactgtgctctatctctccctgaagcaaaggtataatgaagaggtac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CDS seq | atggaagcagctgctttgtcgaccgTcctgtgtgtgctcgcacttgtggtagcggatgcaaatcatcatgtcgtccatgtccaaggacgacggcatcagtgccaacctttctcctgcggccatctccaaaacgtatcgtatccttttcgccggcgaggcgaccctcgcaggtgcggcgtctgggcgtacgagctagactgcagcgatgacgatggcaaggccaccattcggatcaacacagggaaatactatttgagtagcatcaactacactgcttccatcttttgggttgtggatgccaacctgcaggatgatgcaaacagcagctgccctcttcctcgctcggaccagctgccttgccttaatggtatccgaggatcacacgacagctggaacttggcccttgctaatgggattctgtgggttagctttgtcaattgttcgcaggaactaattacgaacagtagtagcaaataccagcccgtgaattgcctgaccacgacttcttccttcgtttattatatgctctcatattttggtacttctttagtaccatctatcaaagacatcgaaccttcttgtggatacttggccatgactcctatcggcgatggcaggaacatcgttaatctgtccgaatacactagttatgcagattttgtaaaatccatgaggggtggatttgccgtcaaatttcctacatatggaggaccttggactacttggtatggtctcatcaaagattgcctcaacgagtctgttagcttagctggtagcgatgacaaggcattacccagatccagagtaggcatcaaaggcaggatcattgacatcctttctattgacctccgtttctggggatgcatgataggcatATccagacggtattacctcgacatgcgtctttccatcagcgacttgatccgcggcgttgatcattctctttaccataagctcttcataatatacaccttgtgtcttgtcaagtggattgctgtgctatgcaggtttgtgttcgcaccgttggctgtgatgatttttcttactcgcaagtactggaaaacaaggattgcaattgatgcagtcgagaagttcctccggatgcaagatatgctaggccccaagaggtacgcctacacggacatcatagcaatcacaagccattttcgagacaagctgggccaaggaggatatgggtctgtgtacaagggtgtgtttctgccgagtggtgttcatgtcgccatcaagatgttggatggcaactccaattgcaacggagaagacttcatcagtgaagttgccaccataggcaggatccatcacatcaacgtggtgcgtcttgtggggttctgctctgaagaaatgagaagagctctggtttatgagtacatgcctagaggatctctaaacaagtacatcttctcatccgagagaagcttctcatgggacaagctcaatgagattgctctgggcattgctagagggatcaactacctgcataaggggtgcgaaatgcagattctacactttgatatcaagccagacaacatccttcttgatgataactttgttccaaaggttgctgatttcggcctcgcaaaactgtacccaagggagaagagctttgtgtcagatagggctttacggggaacagtaggttatatggctcctgagatggtatcccggagctttggcgttatatccgacaaatccgatgtttatagctttggaatgttgTTGcttgagatggctggagatagaaggaatgcagatccaaatgcaaactcaaatgcaagcagggcatactacccagcatgggtgtatgaccagctgatagcagatcaacaagttgatgagatatccaatgttgctaacatgcatgagctagagaggaagctatgccttgttgggctgtggtgcattcagatgaaatcacacgatcggccgacgatgagcgaggcaatagagatgctcgaaggggatgtggatgcgttgcaagtgcctctgagaccatttttctgcgatggggatggcattggcaatggcatgccacctccacaagtcatggattcttactttcactcctccaagcttactgcaatttcagaagaggacgatggaatagctgaatatattagctacactgggagtaaatatgacacgctgcgggatcgatctcttgtgttgaagggaatggagagcaaataccacaactttattgtggcgttcagcaaggatgatttgtggactagcagcaacgatggaataaggaaccaagaacagggtgatccaggatggtgtcttgtccagagcatgataattgcataccaggtgcaccgcatgatggaggttgtGTcgaaagacggaacggatgctgcaggtggccggcggcatcatcggcgccatgactgccctccgttcacatgcggccatctcagtgacgtgtcgttcccgttccgccggcgaggtgacccaccggagtgcggtgttcaatcctacgagctaacttgtgcagacgacaaggctacaattcagatcgacaaggagacatactctgtaagtgacatcaactatggtgattctaccttgtgggtcgtcgatgccagcttcttggattcatgtagcagttgccttcttcctcgctggaacccccttcttcgtgatcccaggctccaggccaagtcacaccatatcattgaattggcacctccagtaggggttacctgggctagctttgtcaattgttcgcaggaaataaggaacagcagttggatgtacatgcccgtcgcttgcctgagcaccagcagatccttcgtttacgtgtttactggccaacaatctgcttatATtcagaaccttgagccttcctgtgggtacctggccacgactcctttgggtggcagcaagttgaacagcacgtcggcgctgcagaatgtaagctatcaggatgttgtaaagctaatgatgactggatttgccgttcgatttcctttcacagttagtgggtggaacttcaaagaatgcctggcactgtcaatccgccagacaggtacagggagcaaggaaaggattgcgaattttgctatcattgacttctatttctggtcgtgcttcctgcttggagatagatcacataataacctcatctacacgtacatgatggtcgacacagttccaatagccctactgattttgaagtggactgctgtagtgtgcagattcgtattggccccattagcagtattcatcttccttgcccacaagtattggagaaataagataacaattgatgcagtagagaagttcctccagatgcaactaactctcggcccaacaaggtatgcctacactgacctcactgcaattacaggtcacttcggtgagaagcttggccaaggaggctacggctcggtatacaaaggtgttctcccaggttatgttaatgtggctgtcaaggtgctggaaaatgccaactgcaacggtgaagagttcatcagtgaggtctccaccattggtaggatccaccacgtcaatgtagttcgtcttgttggttttTgttcagaggaactgaggagggcacttgtgtacaagtacatgccacgaggatctctagacaagtacattttctcatccaagagaagtttctcatgggacaaactcaatgagatagctttgggtattgctaggggGatcaactatcttcatcaaggttgcgatatgcagatactgcactttgacatcaagccacacaacatccttcttgatgacaactttgttccaaaggttgctgatttcggcctcgccaaactgtacccaagggacaacagttttgtgccgctcaacgccttaaggggaacaataggttatattgctcctgaaatgatatctcggagctttggcgttatatcaagcaaatccgatgtctacagctttggaatgctgctgctggagatggctggaggaagaaggaactcagacatgcatgcagagaactcaagtcaggcctactacccgtcgtgggtgtatgaccggctaatagagcaacagatgaagtctcacgatcggccgacgatgagcgaggtcatagagatgcttgaaggtggcgttgttggcctgcagatgcctccaagaccattcttctgtgatgatgaatccatgtcacctatgatgaattcttaccaattctcctctgggctaactgaaatcttagaggaggatgagtga
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Protein seq | MEAAALSTVLCVLALVVADANHHVVHVQGRRHQCQPFSCGHLQNVSYPFRRRGDPRRCGVWAYELDCSDDDGKATIRINTGKYYLSSINYTASIFWVVDANLQDDANSSCPLPRSDQLPCLNGIRGSHDSWNLALANGILWVSFVNCSQELITNSSSKYQPVNCLTTTSSFVYYMLSYFGTSLVPSIKDIEPSCGYLAMTPIGDGRNIVNLSEYTSYADFVKSMRGGFAVKFPTYGGPWTTWYGLIKDCLNESVSLAGSDDKALPRSRVGIKGRIIDILSIDLRFWGCMIGISRRYYLDMRLSISDLIRGVDHSLYHKLFIIYTLCLVKWIAVLCRFVFAPLAVMIFLTRKYWKTRIAIDAVEKFLRMQDMLGPKRYAYTDIIAITSHFRDKLGQGGYGSVYKGVFLPSGVHVAIKMLDGNSNCNGEDFISEVATIGRIHHINVVRLVGFCSEEMRRALVYEYMPRGSLNKYIFSSERSFSWDKLNEIALGIARGINYLHKGCEMQILHFDIKPDNILLDDNFVPKVADFGLAKLYPREKSFVSDRALRGTVGYMAPEMVSRSFGVISDKSDVYSFGMLLLEMAGDRRNADPNANSNASRAYYPAWVYDQLIADQQVDEISNVANMHELERKLCLVGLWCIQMKSHDRPTMSEAIEMLEGDVDALQVPLRPFFCDGDGIGNGMPPPQVMDSYFHSSKLTAISEEDDGIAEYISYTGSKYDTLRDRSLVLKGMESKYHNFIVAFSKDDLWTSSNDGIRNQEQGDPGWCLVQSMIIAYQVHRMMEVVSKDGTDAAGGRRHHRRHDCPPFTCGHLSDVSFPFRRRGDPPECGVQSYELTCADDKATIQIDKETYSVSDINYGDSTLWVVDASFLDSCSSCLLPRWNPLLRDPRLQAKSHHIIELAPPVGVTWASFVNCSQEIRNSSWMYMPVACLSTSRSFVYVFTGQQSAYIQNLEPSCGYLATTPLGGSKLNSTSALQNVSYQDVVKLMMTGFAVRFPFTVSGWNFKECLALSIRQTGTGSKERIANFAIIDFYFWSCFLLGDRSHNNLIYTYMMVDTVPIALLILKWTAVVCRFVLAPLAVFIFLAHKYWRNKITIDAVEKFLQMQLTLGPTRYAYTDLTAITGHFGEKLGQGGYGSVYKGVLPGYVNVAVKVLENANCNGEEFISEVSTIGRIHHVNVVRLVGFCSEELRRALVYKYMPRGSLDKYIFSSKRSFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDDNFVPKVADFGLAKLYPRDNSFVPLNALRGTIGYIAPEMISRSFGVISSKSDVYSFGMLLLEMAGGRRNSDMHAENSSQAYYPSWVYDRLIEQQMKSHDRPTMSEVIEMLEGGVVGLQMPPRPFFCDDESMSPMMNSYQFSSGLTEILEEDE |
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Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLima_01g0001050 | OsLima_01g0001050.02 | Chr01 | 714233 | 732573 | - | NAM | ||
CDS seq | atgctgaagctggaaatattaactgtaaacagtgggcggcggcatcatcagattcagattcagcctgcgtgtcctacgttcacctgtggcgcccatctcaggaacgtgtcgtacccgttccgccggcgaggtgacccgccggagtgcggcgttgcatcgtacgagctgacttgcaccgacgacaaggctattattcagatcgacaacggaacgtaccttgtgaggggcatcaactgcaccgatgctaccttcagtgtcgtggacgccaacatgttggattcaagtaacagtacttgccctcttcctcgctggaatcgcattccttattattaccgaaggtacgggGttgtcgaagactcaagccgcaacatcgtccaagagctggtgccatcttattcgatcataaccgctgcttttgtgacttgttcgcgggaagtaacgaacaatgggatgtacatgcctgtcgcttgcttaagcaccaacagctccttcgtttacgtgctaactggctggttcgctgattttTatatcaagaatctcgagccttcttgtgggtacctggccatgactcctttgagcattggcggcctaccagtaagagcattgaatgcaagctatgcggatgttgtcaaacttatgagaggtggattcgccattcagtttccttacaaaattgatcgtttcgactactgcaagttgaaagacttcatggcacaatcatttcagttcattttggcgcccttagtagtattgacctttctggtgcacaagtattggaagaggaggatgataatcgatgcagtcgagaagtttctccggatgcaactgatgattggtccgacgaggtatgcctacactgacatcactgcaatcacagggcatttcagggagaagctcggccaaggaggctatggctctgtatataaaggtgttctactcccaggcaatgtccatgtggctgtcaaggtgctgggaaactccaattgtaatggagaagagttcatcagtgaagtctccaccattggcaggattcaccatgtcaatgtggttcgtttagtagggttttgtgcagaggaaatgaggagggcactggtgtacgagcacatgcctaatggatctctcgacaagttcatcttttcacatgacatgagattttcctgggacaagctcaacgagatcgcattgggcattgccagaggaataaactatttgcatcaggggtgtgagatgcagattctacattttgatatcaagccgcacaacatccttcttgacagcaatttcattccaaaagttgctgattttggccttgccaaactgtacccacgggataatagttttgtgcctgttagcgctgcacgaggaacaataggttatattgctcctgagatgatatctcggagctttggtgccatatctagcaaatctgacgtgtatagctttggaatgcttctgttggagatggttggagggcgaaggaactctaagcaggatatgtcgagctcaagccaagcgtattatccatcatgggtgtataatcagctggttcaacaagagttgggtgagatggtcactgcctttaatatgcatgagttggaaaagaagttgtgcattgttgggctacattgcattcagatgaagtctcatgatcggccaacaatgagtgaggtcattgagatgcttgacggtggtgctgatggtctgcgattgccttctaggccattcttctgtgatgacgaGcctatgccacatttggtgggttcttaccatttatcctctgggctaactgaaatctcggaggaggatgacatgcatcccctctctaccacaatgcaagcctttgttttcatctttgctgttcttgctcttgcaggagatgtcgaggggcggcaagggtgctatcctttctcctgtggacatctccagaacatttcccatcctttccgccggcgaggtgatccacaaaggtgcggtgttccgtcatatgagttagattgcagcgatagcaaggctaccattaggatcaacacagggacatactatgtaaccagcatcaactacactacttctgtcttctgggttgtggatgccagcctgaaagatacaaacagcagctgccctcttcctcgctcggatcagcttcctttcgtttcggggggtatccagggatcacatggcggctgggacctggcccttgaccctggacctggagctacatgggttagctttgtgaattgttcacaggcagtaaggaacaatagtgtgtacgttcctgttgattgcctgagcacaagctcttcgtttgtttatgtgtttggttcctggataatgcctccatctgtttttccaatcatcggaaaccttgagacttcatgtcgctaccttgccatgattcccttgggtggttgggactcgccattgccacataatgcaagcttttcagacatcgtcagatccatgaggaatggatttgctgttcattttcccataatacataggtggagtaggattgggcacatcaaggattgtctgatggggtcgattcggggatttcatgaagaaccattgtccaatcaaaccatcaaggatcagattgtggacatgctttttattgactttagtttctggtcctgcataattagaggagtgggcatgaaagattatttcgatatgccacaatacatgatggggatgcttcgtggaaaaatagaattttatggcggattcattgtacaatttgctttgtttgttttcaagttcgtgatagctccgttgacactattgaccttccttgccttcaagtattggaaaactagaataaaaatcgacgcagttgagaagtttttacgaatgcagctaatgcttggtccaacaaggtacgcctatacagacatcattgcaatgacaagccattttagagacaagttgggccagggtggctatggatccgtgttcaagggagtgatactgcctggtgatgtccatgttgccatcaaaatgctggccaactacaattgtaatggagaagaattcatcagcgaggtatccaccattggcagtatccatcatgtcaatgtagtacgtctagtggggtattgtgcagaggaaatgaggagagcacttgtgtatgagtacatgccccatggatctcttgacaggttcatcttctctcctgacaagagtctctcttgggacaagctcaatgagatcgcattgggcattgctagaggaataaactacttacatcaggggtgtgatatgcagattctacattttgatatcaagctgcacaacatccttcttgatagcaatttcgtcccaaaagttgccgattttggcctcgccaaactgtatccacaggataacagttttgtgccagttagcgctgcacgaggaacagtaggttatattgctcctgagatgatatctcggagctttggtgtcatatctagcaaatctgatgtttatagctttgggatgcttctgttggagatggctggagggcgaaggaactctaagcaggatatgtcgagctcaagccagtcatattatccatcttgggtgtataatcagctggttcaacaaaagatgggtgagattgccaatgccttcaatatgcatgagctggaaaagaagttgtgtgttgttggtctacattgcattcaaatgaagcctcctgatcgtccaacgatgagtgaggtcatagaaatgcttgaaggtgatgttgatggtctgcagctgccttcaaggccattcttctgcgatgatgaacccctgccattgctagtggattcttgccgtttctcctctgaactaactgaaatctcagaggaggatgagtga
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Protein seq | MLKLEILTVNSGRRHHQIQIQPACPTFTCGAHLRNVSYPFRRRGDPPECGVASYELTCTDDKAIIQIDNGTYLVRGINCTDATFSVVDANMLDSSNSTCPLPRWNRIPYYYRRYGVVEDSSRNIVQELVPSYSIITAAFVTCSREVTNNGMYMPVACLSTNSSFVYVLTGWFADFYIKNLEPSCGYLAMTPLSIGGLPVRALNASYADVVKLMRGGFAIQFPYKIDRFDYCKLKDFMAQSFQFILAPLVVLTFLVHKYWKRRMIIDAVEKFLRMQLMIGPTRYAYTDITAITGHFREKLGQGGYGSVYKGVLLPGNVHVAVKVLGNSNCNGEEFISEVSTIGRIHHVNVVRLVGFCAEEMRRALVYEHMPNGSLDKFIFSHDMRFSWDKLNEIALGIARGINYLHQGCEMQILHFDIKPHNILLDSNFIPKVADFGLAKLYPRDNSFVPVSAARGTIGYIAPEMISRSFGAISSKSDVYSFGMLLLEMVGGRRNSKQDMSSSSQAYYPSWVYNQLVQQELGEMVTAFNMHELEKKLCIVGLHCIQMKSHDRPTMSEVIEMLDGGADGLRLPSRPFFCDDEPMPHLVGSYHLSSGLTEISEEDDMHPLSTTMQAFVFIFAVLALAGDVEGRQGCYPFSCGHLQNISHPFRRRGDPQRCGVPSYELDCSDSKATIRINTGTYYVTSINYTTSVFWVVDASLKDTNSSCPLPRSDQLPFVSGGIQGSHGGWDLALDPGPGATWVSFVNCSQAVRNNSVYVPVDCLSTSSSFVYVFGSWIMPPSVFPIIGNLETSCRYLAMIPLGGWDSPLPHNASFSDIVRSMRNGFAVHFPIIHRWSRIGHIKDCLMGSIRGFHEEPLSNQTIKDQIVDMLFIDFSFWSCIIRGVGMKDYFDMPQYMMGMLRGKIEFYGGFIVQFALFVFKFVIAPLTLLTFLAFKYWKTRIKIDAVEKFLRMQLMLGPTRYAYTDIIAMTSHFRDKLGQGGYGSVFKGVILPGDVHVAIKMLANYNCNGEEFISEVSTIGSIHHVNVVRLVGYCAEEMRRALVYEYMPHGSLDRFIFSPDKSLSWDKLNEIALGIARGINYLHQGCDMQILHFDIKLHNILLDSNFVPKVADFGLAKLYPQDNSFVPVSAARGTVGYIAPEMISRSFGVISSKSDVYSFGMLLLEMAGGRRNSKQDMSSSSQSYYPSWVYNQLVQQKMGEIANAFNMHELEKKLCVVGLHCIQMKPPDRPTMSEVIEMLEGDVDGLQLPSRPFFCDDEPLPLLVDSCRFSSELTEISEEDE
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLima_01g0001050 | OsLima_01g0001050.01 | Chr01 | 732425 | 742519 | - | NAM | ||
CDS seq | atggaagcagctgctttgtcgaccgTcctgtgtgtgctcgcacttgtggtagcggatgcaaatcatcatgtcgtccatgtccaaggacgacggcatcagtgccaacctttctcctgcggccatctccaaaacgtatcgtatccttttcgccggcgaggcgaccctcgcaggtgcggcgtctgggcgtacgagctagactgcagcgatgacgatggcaaggccaccattcggatcaacacagggaaatactatttgagtagcatcaactacactgcttccatcttttgggttgtggatgccaacctgcaggatgatgcaaacagcagctgccctcttcctcgctcggaccagctgccttgccttaatggtatccgaggatcacacgacagctggaacttggcccttgctaatgggattctgtgggttagctttgtcaattgttcgcaggaactaattacgaacagtagtagcaaataccagcccgtgaattgcctgaccacgacttcttccttcgtttattatatgctctcatattttggtacttctttagtaccatctatcaaagacatcgaaccttcttgtggatacttggccatgactcctatcggcgatggcaggaacatcgttaatctgtccgaatacactagttatgcagattttgtaaaatccatgaggggtggatttgccgtcaaatttcctacatatggaggaccttggactacttggtatggtctcatcaaagattgcctcaacgagtctgttagcttagctggtagcgatgacaaggcattacccagatccagagtaggcatcaaaggcaggatcattgacatcctttctattgacctccgtttctggggatgcatgataggcatATccagacggtattacctcgacatgcgtctttccatcagcgacttgatccgcggcgttgatcattctctttaccataagctcttcataatatacaccttgtgtcttgtcaagtggattgctgtgctatgcaggtttgtgttcgcaccgttggctgtgatgatttttcttactcgcaagtactggaaaacaaggattgcaattgatgcagtcgagaagttcctccggatgcaagatatgctaggccccaagaggtacgcctacacggacatcatagcaatcacaagccattttcgagacaagctgggccaaggaggatatgggtctgtgtacaagggtgtgtttctgccgagtggtgttcatgtcgccatcaagatgttggatggcaactccaattgcaacggagaagacttcatcagtgaagttgccaccataggcaggatccatcacatcaacgtggtgcgtcttgtggggttctgctctgaagaaatgagaagagctctggtttatgagtacatgcctagaggatctctaaacaagtacatcttctcatccgagagaagcttctcatgggacaagctcaatgagattgctctgggcattgctagagggatcaactacctgcataaggggtgcgaaatgcagattctacactttgatatcaagccagacaacatccttcttgatgataactttgttccaaaggttgctgatttcggcctcgcaaaactgtacccaagggagaagagctttgtgtcagatagggctttacggggaacagtaggttatatggctcctgagatggtatcccggagctttggcgttatatccgacaaatccgatgtttatagctttggaatgttgTTGcttgagatggctggagatagaaggaatgcagatccaaatgcaaactcaaatgcaagcagggcatactacccagcatgggtgtatgaccagctgatagcagatcaacaagttgatgagatatccaatgttgctaacatgcatgagctagagaggaagctatgccttgttgggctgtggtgcattcagatgaaatcacacgatcggccgacgatgagcgaggcaatagagatgctcgaaggggatgtggatgcgttgcaagtgcctctgagaccatttttctgcgatggggatggcattggcaatggcatgccacctccacaagtcatggattcttactttcactcctccaagcttactgcaatttcagaagaggacgatggaatagctgaatatattagctacactgggagtaaatatgacacgctgcgggatcgatctcttgtgttgaagggaatggagagcaaataccacaactttattgtggcgttcagcaaggatgatttgtggactagcagcaacgatggaataaggaaccaagaacagggtgatccaggatggtgtcttgtccagagcatgataattgcataccaggtgcaccgcatgatggaggttgtGTcgaaagacggaacggatgctgcaggtggccggcggcatcatcggcgccatgactgccctccgttcacatgcggccatctcagtgacgtgtcgttcccgttccgccggcgaggtgacccaccggagtgcggtgttcaatcctacgagctaacttgtgcagacgacaaggctacaattcagatcgacaaggagacatactctgtaagtgacatcaactatggtgattctaccttgtgggtcgtcgatgccagcttcttggattcatgtagcagttgccttcttcctcgctggaacccccttcttcgtgatcccaggctccaggccaagtcacaccatatcattgaattggcacctccagtaggggttacctgggctagctttgtcaattgttcgcaggaaataaggaacagcagttggatgtacatgcccgtcgcttgcctgagcaccagcagatccttcgtttacgtgtttactggccaacaatctgcttatATtcagaaccttgagccttcctgtgggtacctggccacgactcctttgggtggcagcaagttgaacagcacgtcggcgctgcagaatgtaagctatcaggatgttgtaaagctaatgatgactggatttgccgttcgatttcctttcacagttagtgggtggaacttcaaagaatgcctggcactgtcaatccgccagacaggtacagggagcaaggaaaggattgcgaattttgctatcattgacttctatttctggtcgtgcttcctgcttggagatagatcacataataacctcatctacacgtacatgatggtcgacacagttccaatagccctactgattttgaagtggactgctgtagtgtgcagattcgtattggccccattagcagtattcatcttccttgcccacaagtattggagaaataagataacaattgatgcagtagagaagttcctccagatgcaactaactctcggcccaacaaggtatgcctacactgacctcactgcaattacaggtcacttcggtgagaagcttggccaaggaggctacggctcggtatacaaaggtgttctcccaggttatgttaatgtggctgtcaaggtgctggaaaatgccaactgcaacggtgaagagttcatcagtgaggtctccaccattggtaggatccaccacgtcaatgtagttcgtcttgttggttttTgttcagaggaactgaggagggcacttgtgtacaagtacatgccacgaggatctctagacaagtacattttctcatccaagagaagtttctcatgggacaaactcaatgagatagctttgggtattgctaggggGatcaactatcttcatcaaggttgcgatatgcagatactgcactttgacatcaagccacacaacatccttcttgatgacaactttgttccaaaggttgctgatttcggcctcgccaaactgtacccaagggacaacagttttgtgccgctcaacgccttaaggggaacaataggttatattgctcctgaaatgatatctcggagctttggcgttatatcaagcaaatccgatgtctacagctttggaatgctgctgctggagatggctggaggaagaaggaactcagacatgcatgcagagaactcaagtcaggcctactacccgtcgtgggtgtatgaccggctaatagagcaacagatgaagtctcacgatcggccgacgatgagcgaggtcatagagatgcttgaaggtggcgttgttggcctgcagatgcctccaagaccattcttctgtgatgatgaatccatgtcacctatgatgaattcttaccaattctcctctgggctaactgaaatcttagaggaggatgagtga
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Protein seq | MEAAALSTVLCVLALVVADANHHVVHVQGRRHQCQPFSCGHLQNVSYPFRRRGDPRRCGVWAYELDCSDDDGKATIRINTGKYYLSSINYTASIFWVVDANLQDDANSSCPLPRSDQLPCLNGIRGSHDSWNLALANGILWVSFVNCSQELITNSSSKYQPVNCLTTTSSFVYYMLSYFGTSLVPSIKDIEPSCGYLAMTPIGDGRNIVNLSEYTSYADFVKSMRGGFAVKFPTYGGPWTTWYGLIKDCLNESVSLAGSDDKALPRSRVGIKGRIIDILSIDLRFWGCMIGISRRYYLDMRLSISDLIRGVDHSLYHKLFIIYTLCLVKWIAVLCRFVFAPLAVMIFLTRKYWKTRIAIDAVEKFLRMQDMLGPKRYAYTDIIAITSHFRDKLGQGGYGSVYKGVFLPSGVHVAIKMLDGNSNCNGEDFISEVATIGRIHHINVVRLVGFCSEEMRRALVYEYMPRGSLNKYIFSSERSFSWDKLNEIALGIARGINYLHKGCEMQILHFDIKPDNILLDDNFVPKVADFGLAKLYPREKSFVSDRALRGTVGYMAPEMVSRSFGVISDKSDVYSFGMLLLEMAGDRRNADPNANSNASRAYYPAWVYDQLIADQQVDEISNVANMHELERKLCLVGLWCIQMKSHDRPTMSEAIEMLEGDVDALQVPLRPFFCDGDGIGNGMPPPQVMDSYFHSSKLTAISEEDDGIAEYISYTGSKYDTLRDRSLVLKGMESKYHNFIVAFSKDDLWTSSNDGIRNQEQGDPGWCLVQSMIIAYQVHRMMEVVSKDGTDAAGGRRHHRRHDCPPFTCGHLSDVSFPFRRRGDPPECGVQSYELTCADDKATIQIDKETYSVSDINYGDSTLWVVDASFLDSCSSCLLPRWNPLLRDPRLQAKSHHIIELAPPVGVTWASFVNCSQEIRNSSWMYMPVACLSTSRSFVYVFTGQQSAYIQNLEPSCGYLATTPLGGSKLNSTSALQNVSYQDVVKLMMTGFAVRFPFTVSGWNFKECLALSIRQTGTGSKERIANFAIIDFYFWSCFLLGDRSHNNLIYTYMMVDTVPIALLILKWTAVVCRFVLAPLAVFIFLAHKYWRNKITIDAVEKFLQMQLTLGPTRYAYTDLTAITGHFGEKLGQGGYGSVYKGVLPGYVNVAVKVLENANCNGEEFISEVSTIGRIHHVNVVRLVGFCSEELRRALVYKYMPRGSLDKYIFSSKRSFSWDKLNEIALGIARGINYLHQGCDMQILHFDIKPHNILLDDNFVPKVADFGLAKLYPRDNSFVPLNALRGTIGYIAPEMISRSFGVISSKSDVYSFGMLLLEMAGGRRNSDMHAENSSQAYYPSWVYDRLIEQQMKSHDRPTMSEVIEMLEGGVVGLQMPPRPFFCDDESMSPMMNSYQFSSGLTEILEEDE
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.235434 | 0.054611 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0114100 | RBH | 0.327124 | 0.000000 | 1.199296 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02680 | RBH | 0.0 | 0.000000 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os01g0114100 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001210 | SBH | 0.048626 | 0.000000 | 0.000000 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001070 | RBH | 0.160955 | 0.171025 | 0.792215 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001230 | SBH | 0.875923 | 0.000000 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001110 | SBH | 0.051644 | 0.000000 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001240 | RBH | 11.364197 | 1.983415 | 9.245715 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0014900 | RBH | 0 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001080 | RBH | 0.000000 | 0.000000 | 0.000000 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0013800 | SBH | 4.878753 | 11.655432 | 16.026512 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001110 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001130 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001130 | RBH | 0.287462 | 2.850632 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001250 | RBH | 0.333055 | 0.141762 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001160 | RBH | 0.084394 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001240 | RBH | 0.900158 | 1.196784 | 0.692669 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001160 | SBH | 0.000000 | 0.000000 | 0.000000 |