Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0115600 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:843530-847399 | ||||||||
| Gene Symbol | RLCK9, OsRLCK9, RLCK11, OsRLCK11 | ||||||||||
| DNA seq | GCCATTACACTCCATGGACTTGCCAAAACTTCTCTTCACAGTACTCATACTCTCTCTTCTCAACTACGAATCCTCTTCCGCCACAGCATGGGATGATGAAGATTTCTTCAAGACTTGCTCATCACACAGGTGCAGCAAGCATGGACCAGAGATCAGGTTCCCTTTCCGGCTCTCGACACAACCTCCATCATGCGGCGCACCCGGCATGCACTTGTCATGCTCTGGACAGGACACCATCCTCAATCACCCAGTTCTTGGTCCCTGCAAAGTAACCGAGATAAGTTACAGTTATGCTACCATGAACGTCATCCCACCTGTAGATTCCTCACCTCACTGCCCACTTCAGAAGCTCATGTCGAAAAACCAATCAACTTCTGTGTACAAACCTCAAGGTCCTCAATCGCAGGGAGCTACCCTTGTAGTTTGTTCAAGAGATCCCATACCTGCAAATCAATACGACATAGTTGGCCCAATATCTTGCCTCGGCCATAATAACCAGTTCTGGTATTTGGCAGATCCCTATACATACATGTCTGTTCTTCCCTTGGACTGCACAGTTATTTCTAAAGGCATCCCAATGCCCTATAGTTATGATAAAAAAGGGAGAATAAACTGGGACACCTCAAACTTCAAGGAAACAGCAAATAGAGTCATCAACGATGGTGAGACAGTATTCATGTGGTACTCTAGTAACATTACTAGTATTTGCCAACGATGTGAATATGAAGGCCGACCCTGTGGTTTCAGTTCACAAAGTGGTCAAGCATTCTGTCGGCGTCATGGTATTTTTTCTCTCTCTTTTTGAAGCACAAACCCCATATCATTATGGTGACTTGTTTCATTTTCGAATAGCATTCAATATTTTTTTTCCAATTCTCAGTACGTTAGTTATCCAATCTTCTATATTCTAATACAGTGATTTCAAGCTCGATGCAATATTTTCACCTTGCAATCAAACAGTTTAGCAAAAGTGAAGGTGTACTGTGAATCACTTGATTGCTAGCTTGGATGAACATTTTAGCTCTAGGTTCACATCCGTAATGTTCTAACAGAAGCCCCTGCAAAGAGATGACAGTGTCTAAAATAATTAAATAATAATTTTCCCTTTTTCTTTCGCTTCAAACCAAAGTAACTGTTCAAAATAGTGCTTTGTTGTACACAGATTACGGTGCACTAATGAAAATTCACAAACTGTACAACGTTACATAGAAGTATTAACATTCATAAATGTTTATCTATACTAATATAAAAGATGGTAGTGGTGGTGGTGAGTCTGCCACCACCACCAGCCAACTACCATGCGGGACCCACGAAATGTGAGATAAAACTTTGATTGTTTCGTAACCCCCACATGCCATAGACCCCGTCGAAAGGAAAATATGACAATAGAATATTATGGAATTTTTCATCTTTGCGAAATGGCAGCAAAATTAGCACAATAATAATATACTAGACAATTAGAAAAAACCCGTTGCAATGCACGGACATTATGCTAGTATGATATAACACTGTTCTCTGTATTTCAGCAAAAACAAAAAAAAGAAAAGAAAAACATATGTACAATCCATTTGATGGACCTGAATTTATGTGACAACTCCAATAACTTATAAGACAAGTTGAAAGTTAATATTACTACAGTAGGAAACAATAATGTACCAGTATCATATAGACTATGACTCTATGAGCAGAGAGATTATATGGTGCCAACAGAGTAGAGATCTCACTTGATAATGCAGTGATAAGGGGTATGTGGTTTCAACCCCGAGGTCCCGTGTTCAATCCCCAGTATGCTCACAATTTCTTCTTAAAAATTTTTTGGAGGGACGTCTCTCCCTCCAAATCTCCTTTTTTTTTTGGGTGCTAACAGAGTAGAATCCAGAACATGCTTTGCAGACTGCAGTGATCTGTGAGATCATTATATTAGATATTCCATCCTTCTAAATAATTTAAACTAAAGCATTTCTCTTTTTATGGTTGGTTAAGATAAGAATCCTCCCTCCCATCCTATTCCCTTTTATGACTACTAGCTAAATGCCCGTGCTTTGCTGCGGATAAAAGGAAAAATATAACAATATTTTATAACATAAATAAATCATATTTTCCATGAAATATGTTATCCACATTTCCCCTATAGGAAAATGTGGGCTATCCACATTAATTTTATATGTGGCTATCCATTTAGATTTAGTTGTTATGTAATATTAAAAAGTTCAAAGGGTAATATGTAAAACTTGTAATAGGAGTAGGTGGGTGGAAAATTCACTGCCACCACCATTGGAATCTTTTTAAAGGAGTATAGATACCCATGCAAGTTTTAAAATTCTATACAGCAAGCCATATAAAAATCTGGAATCAGTTTTACTTTTATTTTAAAAAAACATCCTTTTTATATACAAATCAAGGGAATACTAATTCTCTTTCTTTCTACATGCAGGACCGCGGGTCACTCTTGTTGCAGGTAAGGAAATAACTCAATCTTTTGTCCATTCTGCATGAAATTTCAATTAAATGCCACCCAATTTATGAACTTTCAACAAAGAGAGTGTATATATTTTCTAATCCAAATAAGAAATGCCATGATTATCTTGACAATAAAGGCACATCTGGAAAATAAATTACAGAATTATGTCATCTCCAAATGCAGCTAACTAACTTTCTTATTTTTCAATCAGCTACATCATCTGTAGCCACATTTGTAATTCTTTCATTAGTTGTGGCCACTGCATTCTACATCTCCTTAAAGTCAAGGTACAACAAAGAGATACATTTGAAAGTTGAAATGTTTCTCAAGACATATGGCACATCCAAGCCCATGAGGTACACTTTCTCCGATGTTAAGAAAATAACAAGACGGTTCAAGAATAAATTAGGCCATGGTGGATTTGGAAGTGTCTACAAAGGTGAGCTACCAAATGGAGTTCCTGTGGCAGTCAAGATGCTAGAGAACTCCTTAGGAGAGGGAGAAGAGTTCATCAATGAAGTTGCGACCATTGGGAGAATTCACCATGCAAACATCGTCCGTCTCCTAGGATTTTGCTCTGAAGGAACACGACGGGCTTTAATATATGAATTCATGCCCAATGAATCGTTGGAGAAATATATATTCTCAAATGGTTCTAATATTTCAAGAGAATTCCTAGTACCAAAGAAAATGCTAGATATTGCTTTAGGCATCGCCCGAGGAATGGAGTACTTGCACCAAGGGTGCAATCAGCGCATTCTCCATTTTGACATCAAGCCTCACAACATATTGTTGGACTACAGCTTCAGTCCAAAGATCTCAGACTTTGGGCTTGCAAAGTTGTGCGCAAGAGATCAAAGCATTGTCACATTAACTGCAGCAAGGGGCACGATGGGTTATATTGCACCAGAACTATATTCTCGGAGTTTTGGAGCAATATCATACAAGTCGGATGTCTACAGTTTCGGCATGCTGGTGTTAGAAATGGTGAGTGGGAGGAGGAACACAGACCCAACCGTTGAGAACCAAAATGAGTTCTACTTTCCTGAGTGGATATATGAGAGAGTAATCAATGGGCAGGAACTGGTGCTTAACATGGAGACAACACAAGGGGAGAAAGAAACGGTTAGACAGCTAGCCATTGTAGCGTTATGGTGCATTCAGTGGAACCCAACAAACCGGCCCTCGATGACAAAGGTAGTAAACATGTTAACGGGGAGGTTGCAGAAACTACAGGTGCCGCCTAAGCCCTTCATTTCGTCTGAAAATCATCTTGCGACTTAGATCATGGAAACACAATTCCATGGTTTAGAGATATGTTTGATCGATCCGTAGCTTGTATGTATGGTGTAAGATTATTCAACTATATTGTGCTATCAGACATATGGTATATGTATTCATGCAATTCT
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| CDS seq | ATGGACTTGCCAAAACTTCTCTTCACAGTACTCATACTCTCTCTTCTCAACTACGAATCCTCTTCCGCCACAGCATGGGATGATGAAGATTTCTTCAAGACTTGCTCATCACACAGGTGCAGCAAGCATGGACCAGAGATCAGGTTCCCTTTCCGGCTCTCGACACAACCTCCATCATGCGGCGCACCCGGCATGCACTTGTCATGCTCTGGACAGGACACCATCCTCAATCACCCAGTTCTTGGTCCCTGCAAAGTAACCGAGATAAGTTACAGTTATGCTACCATGAACGTCATCCCACCTGTAGATTCCTCACCTCACTGCCCACTTCAGAAGCTCATGTCGAAAAACCAATCAACTTCTGTGTACAAACCTCAAGGTCCTCAATCGCAGGGAGCTACCCTTGTAGTTTGTTCAAGAGATCCCATACCTGCAAATCAATACGACATAGTTGGCCCAATATCTTGCCTCGGCCATAATAACCAGTTCTGGTATTTGGCAGATCCCTATACATACATGTCTGTTCTTCCCTTGGACTGCACAGTTATTTCTAAAGGCATCCCAATGCCCTATAGTTATGATAAAAAAGGGAGAATAAACTGGGACACCTCAAACTTCAAGGAAACAGCAAATAGAGTCATCAACGATGGTGAGACAGTATTCATGTGGTACTCTAGTAACATTACTAGTATTTGCCAACGATGTGAATATGAAGGCCGACCCTGTGGTTTCAGTTCACAAAGTGGTCAAGCATTCTGTCGGCGTCATGGACCGCGGGTCACTCTTGTTGCAGCTACATCATCTGTAGCCACATTTGTAATTCTTTCATTAGTTGTGGCCACTGCATTCTACATCTCCTTAAAGTCAAGGTACAACAAAGAGATACATTTGAAAGTTGAAATGTTTCTCAAGACATATGGCACATCCAAGCCCATGAGGTACACTTTCTCCGATGTTAAGAAAATAACAAGACGGTTCAAGAATAAATTAGGCCATGGTGGATTTGGAAGTGTCTACAAAGGTGAGCTACCAAATGGAGTTCCTGTGGCAGTCAAGATGCTAGAGAACTCCTTAGGAGAGGGAGAAGAGTTCATCAATGAAGTTGCGACCATTGGGAGAATTCACCATGCAAACATCGTCCGTCTCCTAGGATTTTGCTCTGAAGGAACACGACGGGCTTTAATATATGAATTCATGCCCAATGAATCGTTGGAGAAATATATATTCTCAAATGGTTCTAATATTTCAAGAGAATTCCTAGTACCAAAGAAAATGCTAGATATTGCTTTAGGCATCGCCCGAGGAATGGAGTACTTGCACCAAGGGTGCAATCAGCGCATTCTCCATTTTGACATCAAGCCTCACAACATATTGTTGGACTACAGCTTCAGTCCAAAGATCTCAGACTTTGGGCTTGCAAAGTTGTGCGCAAGAGATCAAAGCATTGTCACATTAACTGCAGCAAGGGGCACGATGGGTTATATTGCACCAGAACTATATTCTCGGAGTTTTGGAGCAATATCATACAAGTCGGATGTCTACAGTTTCGGCATGCTGGTGTTAGAAATGGTGAGTGGGAGGAGGAACACAGACCCAACCGTTGAGAACCAAAATGAGTTCTACTTTCCTGAGTGGATATATGAGAGAGTAATCAATGGGCAGGAACTGGTGCTTAACATGGAGACAACACAAGGGGAGAAAGAAACGGTTAGACAGCTAGCCATTGTAGCGTTATGGTGCATTCAGTGGAACCCAACAAACCGGCCCTCGATGACAAAGGTAGTAAACATGTTAACGGGGAGGTTGCAGAAACTACAGGTGCCGCCTAAGCCCTTCATTTCGTCTGAAAATCATCTTGCGACTTAG
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| Protein seq | MDLPKLLFTVLILSLLNYESSSATAWDDEDFFKTCSSHRCSKHGPEIRFPFRLSTQPPSCGAPGMHLSCSGQDTILNHPVLGPCKVTEISYSYATMNVIPPVDSSPHCPLQKLMSKNQSTSVYKPQGPQSQGATLVVCSRDPIPANQYDIVGPISCLGHNNQFWYLADPYTYMSVLPLDCTVISKGIPMPYSYDKKGRINWDTSNFKETANRVINDGETVFMWYSSNITSICQRCEYEGRPCGFSSQSGQAFCRRHGPRVTLVAATSSVATFVILSLVVATAFYISLKSRYNKEIHLKVEMFLKTYGTSKPMRYTFSDVKKITRRFKNKLGHGGFGSVYKGELPNGVPVAVKMLENSLGEGEEFINEVATIGRIHHANIVRLLGFCSEGTRRALIYEFMPNESLEKYIFSNGSNISREFLVPKKMLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYSFSPKISDFGLAKLCARDQSIVTLTAARGTMGYIAPELYSRSFGAISYKSDVYSFGMLVLEMVSGRRNTDPTVENQNEFYFPEWIYERVINGQELVLNMETTQGEKETVRQLAIVALWCIQWNPTNRPSMTKVVNMLTGRLQKLQVPPKPFISSENHLAT |
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| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0115600 | OsNip_01t0115600-01 | Chr01 | 843530 | 847399 | + | RAP2018-11-26 | ||
| CDS seq | ATGGACTTGCCAAAACTTCTCTTCACAGTACTCATACTCTCTCTTCTCAACTACGAATCCTCTTCCGCCACAGCATGGGATGATGAAGATTTCTTCAAGACTTGCTCATCACACAGGTGCAGCAAGCATGGACCAGAGATCAGGTTCCCTTTCCGGCTCTCGACACAACCTCCATCATGCGGCGCACCCGGCATGCACTTGTCATGCTCTGGACAGGACACCATCCTCAATCACCCAGTTCTTGGTCCCTGCAAAGTAACCGAGATAAGTTACAGTTATGCTACCATGAACGTCATCCCACCTGTAGATTCCTCACCTCACTGCCCACTTCAGAAGCTCATGTCGAAAAACCAATCAACTTCTGTGTACAAACCTCAAGGTCCTCAATCGCAGGGAGCTACCCTTGTAGTTTGTTCAAGAGATCCCATACCTGCAAATCAATACGACATAGTTGGCCCAATATCTTGCCTCGGCCATAATAACCAGTTCTGGTATTTGGCAGATCCCTATACATACATGTCTGTTCTTCCCTTGGACTGCACAGTTATTTCTAAAGGCATCCCAATGCCCTATAGTTATGATAAAAAAGGGAGAATAAACTGGGACACCTCAAACTTCAAGGAAACAGCAAATAGAGTCATCAACGATGGTGAGACAGTATTCATGTGGTACTCTAGTAACATTACTAGTATTTGCCAACGATGTGAATATGAAGGCCGACCCTGTGGTTTCAGTTCACAAAGTGGTCAAGCATTCTGTCGGCGTCATGGACCGCGGGTCACTCTTGTTGCAGCTACATCATCTGTAGCCACATTTGTAATTCTTTCATTAGTTGTGGCCACTGCATTCTACATCTCCTTAAAGTCAAGGTACAACAAAGAGATACATTTGAAAGTTGAAATGTTTCTCAAGACATATGGCACATCCAAGCCCATGAGGTACACTTTCTCCGATGTTAAGAAAATAACAAGACGGTTCAAGAATAAATTAGGCCATGGTGGATTTGGAAGTGTCTACAAAGGTGAGCTACCAAATGGAGTTCCTGTGGCAGTCAAGATGCTAGAGAACTCCTTAGGAGAGGGAGAAGAGTTCATCAATGAAGTTGCGACCATTGGGAGAATTCACCATGCAAACATCGTCCGTCTCCTAGGATTTTGCTCTGAAGGAACACGACGGGCTTTAATATATGAATTCATGCCCAATGAATCGTTGGAGAAATATATATTCTCAAATGGTTCTAATATTTCAAGAGAATTCCTAGTACCAAAGAAAATGCTAGATATTGCTTTAGGCATCGCCCGAGGAATGGAGTACTTGCACCAAGGGTGCAATCAGCGCATTCTCCATTTTGACATCAAGCCTCACAACATATTGTTGGACTACAGCTTCAGTCCAAAGATCTCAGACTTTGGGCTTGCAAAGTTGTGCGCAAGAGATCAAAGCATTGTCACATTAACTGCAGCAAGGGGCACGATGGGTTATATTGCACCAGAACTATATTCTCGGAGTTTTGGAGCAATATCATACAAGTCGGATGTCTACAGTTTCGGCATGCTGGTGTTAGAAATGGTGAGTGGGAGGAGGAACACAGACCCAACCGTTGAGAACCAAAATGAGTTCTACTTTCCTGAGTGGATATATGAGAGAGTAATCAATGGGCAGGAACTGGTGCTTAACATGGAGACAACACAAGGGGAGAAAGAAACGGTTAGACAGCTAGCCATTGTAGCGTTATGGTGCATTCAGTGGAACCCAACAAACCGGCCCTCGATGACAAAGGTAGTAAACATGTTAACGGGGAGGTTGCAGAAACTACAGGTGCCGCCTAAGCCCTTCATTTCGTCTGAAAATCATCTTGCGACTTAG
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| Protein seq | MDLPKLLFTVLILSLLNYESSSATAWDDEDFFKTCSSHRCSKHGPEIRFPFRLSTQPPSCGAPGMHLSCSGQDTILNHPVLGPCKVTEISYSYATMNVIPPVDSSPHCPLQKLMSKNQSTSVYKPQGPQSQGATLVVCSRDPIPANQYDIVGPISCLGHNNQFWYLADPYTYMSVLPLDCTVISKGIPMPYSYDKKGRINWDTSNFKETANRVINDGETVFMWYSSNITSICQRCEYEGRPCGFSSQSGQAFCRRHGPRVTLVAATSSVATFVILSLVVATAFYISLKSRYNKEIHLKVEMFLKTYGTSKPMRYTFSDVKKITRRFKNKLGHGGFGSVYKGELPNGVPVAVKMLENSLGEGEEFINEVATIGRIHHANIVRLLGFCSEGTRRALIYEFMPNESLEKYIFSNGSNISREFLVPKKMLDIALGIARGMEYLHQGCNQRILHFDIKPHNILLDYSFSPKISDFGLAKLCARDQSIVTLTAARGTMGYIAPELYSRSFGAISYKSDVYSFGMLVLEMVSGRRNTDPTVENQNEFYFPEWIYERVINGQELVLNMETTQGEKETVRQLAIVALWCIQWNPTNRPSMTKVVNMLTGRLQKLQVPPKPFISSENHLAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.620285 | 0.249876 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0117100 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02560 | RBH | 0.408265 | 0.163573 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0115600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001110 | RBH | 1.344002 | 0.000000 | 1.964355 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001080 | RBH | 0.069754 | 0.307502 | 0.332710 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001190 | RBH | 1.017128 | 0.0 | 0.722750 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001070 | RBH | 0.848388 | 0.084800 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001120 | RBH | 18.772816 | 0.000000 | 3.402025 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0013000 | RBH | 7.4692735 | 0.38559 | 0.6560215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001120 | RBH | 0.297357 | 0.000000 | 0.058272 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015300 | RBH | 0.1515845 | 0.0066435 | 0.038852 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001090 | RBH | 0.046334 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001230 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001140 | RBH | 8.721477 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001290 | SBH | 1.755259 | 0.526992 | 0.360528 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001140 | RBH | 0.057369 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001230 | RBH | 0.122705 | 0.000000 | 0.105232 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001130 | RBH | 0.898583 | 0.000000 | 0.000000 |
