Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0001290 | OGI:01002250 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:894858-895763 | ||||||||
| Gene Symbol | MAK1, RLCK9, OsRLCK9, RLCK10, OsRLCK10, RLCK11, OsRLCK11, Os8Tak3, RLCK17, OsRLCK17, OsLysM-RLK3, LysM-RLK3, OsLYK1, LYK1 | ||||||||||
| DNA seq | atggaacatcaaaacccaaaacataagttaggccagggtggttttggaagtatatacaagggtgagctaccaaatggagtacctgtggcagttaagatgctagaaaattctataggagatgggcatgaattcatcaatgaagttgcaaccattgggacaatccaccatgccaatgtgctccgccttttgggtttttgttcagaaggaacaagacgtgctttaatttatgaattcatgcctaatgactcattggagaaatatatattctcacaaggttctaatgtgtcaagggactacctagtacctgaaaaaatggtagatgtcgctttaggcattgcaagaggaatggagtacctacatcaaggatgcaatcagcgcattctccatttcgatatcaagcctcacaatatAttactagattacagatttaacccaaagattgcagattttgggcttgcaaagctgtgtgcaagggatcaaagcattgtcacgttgactgcagcaagaggcacaatgggctacattgcaccagaattatattctcggaactttggagccatatcatacaagtcagatgtttatagtttcggcatactggttttagaaatggtgagtggaagaaggaacctggacccaagtattgagacccaacatgaggtttatttccccgagtggatttatgaaaaagtatttactgggcaacagttaacagttggtatggaaatgacacaggtagaaaaagatagagtgagacaactggcaattgtggcactatggtgcattcagtggaacccgagaaacaggccttcaacgacccaggtggttaacatgctaacaggaaggttgcaggatctgcagatgcctcctaaaccctttttctcatctgcaagcgaatctataccgtaa
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| CDS seq | atggaacatcaaaacccaaaacataagttaggccagggtggttttggaagtatatacaagggtgagctaccaaatggagtacctgtggcagttaagatgctagaaaattctataggagatgggcatgaattcatcaatgaagttgcaaccattgggacaatccaccatgccaatgtgctccgccttttgggtttttgttcagaaggaacaagacgtgctttaatttatgaattcatgcctaatgactcattggagaaatatatattctcacaaggttctaatgtgtcaagggactacctagtacctgaaaaaatggtagatgtcgctttaggcattgcaagaggaatggagtacctacatcaaggatgcaatcagcgcattctccatttcgatatcaagcctcacaatatAttactagattacagatttaacccaaagattgcagattttgggcttgcaaagctgtgtgcaagggatcaaagcattgtcacgttgactgcagcaagaggcacaatgggctacattgcaccagaattatattctcggaactttggagccatatcatacaagtcagatgtttatagtttcggcatactggttttagaaatggtgagtggaagaaggaacctggacccaagtattgagacccaacatgaggtttatttccccgagtggatttatgaaaaagtatttactgggcaacagttaacagttggtatggaaatgacacaggtagaaaaagatagagtgagacaactggcaattgtggcactatggtgcattcagtggaacccgagaaacaggccttcaacgacccaggtggttaacatgctaacaggaaggttgcaggatctgcagatgcctcctaaaccctttttctcatctgcaagcgaatctataccgtaa
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| Protein seq | MEHQNPKHKLGQGGFGSIYKGELPNGVPVAVKMLENSIGDGHEFINEVATIGTIHHANVLRLLGFCSEGTRRALIYEFMPNDSLEKYIFSQGSNVSRDYLVPEKMVDVALGIARGMEYLHQGCNQRILHFDIKPHNILLDYRFNPKIADFGLAKLCARDQSIVTLTAARGTMGYIAPELYSRNFGAISYKSDVYSFGILVLEMVSGRRNLDPSIETQHEVYFPEWIYEKVFTGQQLTVGMEMTQVEKDRVRQLAIVALWCIQWNPRNRPSTTQVVNMLTGRLQDLQMPPKPFFSSASESIP |
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| Function | Rust resistance kinase Lr10 [UniProtKB/Swiss-Prot:P93604] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0001290 | OsLiXu_01g0001290.01 | Chr01 | 894858 | 895763 | + | NAM | ||
| CDS seq | atggaacatcaaaacccaaaacataagttaggccagggtggttttggaagtatatacaagggtgagctaccaaatggagtacctgtggcagttaagatgctagaaaattctataggagatgggcatgaattcatcaatgaagttgcaaccattgggacaatccaccatgccaatgtgctccgccttttgggtttttgttcagaaggaacaagacgtgctttaatttatgaattcatgcctaatgactcattggagaaatatatattctcacaaggttctaatgtgtcaagggactacctagtacctgaaaaaatggtagatgtcgctttaggcattgcaagaggaatggagtacctacatcaaggatgcaatcagcgcattctccatttcgatatcaagcctcacaatatAttactagattacagatttaacccaaagattgcagattttgggcttgcaaagctgtgtgcaagggatcaaagcattgtcacgttgactgcagcaagaggcacaatgggctacattgcaccagaattatattctcggaactttggagccatatcatacaagtcagatgtttatagtttcggcatactggttttagaaatggtgagtggaagaaggaacctggacccaagtattgagacccaacatgaggtttatttccccgagtggatttatgaaaaagtatttactgggcaacagttaacagttggtatggaaatgacacaggtagaaaaagatagagtgagacaactggcaattgtggcactatggtgcattcagtggaacccgagaaacaggccttcaacgacccaggtggttaacatgctaacaggaaggttgcaggatctgcagatgcctcctaaaccctttttctcatctgcaagcgaatctataccgtaa
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| Protein seq | MEHQNPKHKLGQGGFGSIYKGELPNGVPVAVKMLENSIGDGHEFINEVATIGTIHHANVLRLLGFCSEGTRRALIYEFMPNDSLEKYIFSQGSNVSRDYLVPEKMVDVALGIARGMEYLHQGCNQRILHFDIKPHNILLDYRFNPKIADFGLAKLCARDQSIVTLTAARGTMGYIAPELYSRNFGAISYKSDVYSFGILVLEMVSGRRNLDPSIETQHEVYFPEWIYEKVFTGQQLTVGMEMTQVEKDRVRQLAIVALWCIQWNPRNRPSTTQVVNMLTGRLQDLQMPPKPFFSSASESIP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.755259 | 0.526992 | 0.360528 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0114700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02440 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0114700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001270 | SBH | 2.699589 | 1.366679 | 3.534931 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001140 | RBH | 0.956421 | 0.000000 | 0.853077 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001140 | RBH | 0.0 | 0.000000 | 1.800174 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001180 | RBH | 0.675559 | 0.081542 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001230 | RBH | 6.210065 | 7.798440 | 8.507724 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0016000 | RBH | 1.6942795 | 5.724617 | 3.7314985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001210 | RBH | 0.046115 | 0.000000 | 0.124310 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015200 | SBH | 1.617323 | 0.890693 | 1.779883 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001170 | SBH | 0.907174 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001350 | SBH | 0.470036 | 0.861946 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001230 | RBH | 5.305496 | 3.892169 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0073120 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001220 | RBH | 0.084183 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001350 | SBH | 0.584981 | 0.000000 | 0.584613 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001250 | RBH | 5.318302 | 2.614865 | 3.029929 |
