Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0101150 | OGI:01000170 | 4/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:58658-61090 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCACCCCTCCAAAACCACCGCCACCGTCGTCGCCAATGTCGCCGCCGCGGCCCTCCCCCTCCCCCTCCCCCGTGCCGCCACGCCGCTCGACGCCCGCATGGTCAAGACGGGCTTCGACGTCCTCACCTACCGGCTCAACCTCGGCCTCCGCTCCCTCCTCTCCTCCGGCCACCTTCACCGCGCCCGCGCCATGTTCGACCAAATGCCCCACAAGAACATCTTCTCCCTCAACCTCATCCTCTCCGCCTACTCCAGCTCTGGCGACCTCCCCGCTGCACAACACCTCTTCCTCTCCTCCCCTCATCGCAACGCCACCACCTGGACAATCATGATGAGGGCGCACGCCGCTGCTGGTCGAACCTCCGATGCCTTGTCGCTCTTCCGCGCTATGCTCGGGGAGGGTGTCATTCCAGACCGCGTCACCGTCACCACCGTGCTTAACCTGCCTGGATGCACTGTCCCGTCGCTCCATCCCTTCGCCATCAAGTTCGGCCTCGACACCCATGTTTTCGTCTGCAACACGCTGCTAGACGCCTACTGTAAGCACGGCCTCCTTGCTGCTGCCCGGAGAGTCTTTCTGGAGATGCACGATAAGGACGCAGTCACATACAACGCCATGATGATGGGCTGCTCCAAGGAGGGACTGCACACCCAGGCGCTCCAACTATTTGCTGCTATGCGCCGCGCTGGTATTCCCGCCACCCACTTCACCTTCTCCAGTATTCTCACAGTCGCAGCAGGTATGGCTCATCTCCTCCTTGGGCATCAGGTTCACGCTCTCGTGCTCAGATCCACCTCAGTGCTCAACGTGTTTGTCAACAACTCATTGCTCGATTTCTACTCCAAATGCGATTGCCTTGATGACATGAGGAGACTGTTTGATGAGATGCCAGAGCGGGACAATGTCTCCTATAATGTGATTATTGCAGCCTATGCTTGGAACCAGTGCGCTGCCACGGTGCTGCGGCTGTTCAGGGAGATGCAGAAGCTGGGTTTCGACAGGCAGGTGTTGCCTTATGCTACTATGCTAAGCGTAGCTGGGTCTCTGCCTGACGTGCACATCGGGAAGCAAATACATGCTCAGCTGGTCCTTCTGGGCCTTGCTTCTGAGGATCTTTTGGGCAATGCGCTGATTGACATGTACTCAAAATGCGGCATGCTCGATGCTGCAAAGAGTAACTTTTCTAACAGAAGTGAAAAATCTGCCATTTCATGGACTGCTTTGATCACTGGGTATGTGCAGAATGGACAGCATGAAGAAGCTCTGCAATTGTTCTCTGACATGAGAAGAGCTGGTCTAAGGCCTGACAGGGCAACGTTTTCAAGCATCATCAAGGCTTCCTCAAGCCTCGCAATGATTGGGCTAGGAAGGCAATTGCACTCGTACCTCATTAGGTCAGGCTATAAGTCCAGTGTATTCTCCGGGAGTGTCCTTGTTGACATGTACGCTAAGTGTGGCTGTTTGGACGAGGCACTTCGGACATTTGATGAGATGCCTGAGAGGAATTCCATCTCGTGGAATGCTGTTATTTCAGCCTACGCTCACTATGGAGAGGCAAAGAATGCCATCAAGATGTTTGAAGGCATGCTTCATTGTGGTTTTAATCCAGATTCAGTCACCTTCTTGAGTGTTCTAGCAGCATGCAGTCACAATGGTCTTGCAGATGAATGCATGAAGTACTTTCACTTGATGAAACACCAATATAGTATATCACCCTGGAAGGAACACTATGCTTGTGTTATAGATACATTGGGTCGGGTAGGCTGTTTTTCTCAAGTTCAGAAAATGTTGGTTGAGATGCCATTCAAGGCTGATCCAATAATATGGACCTCCATTCTTCACTCGTGTCGAATTCATGGAAACCAGGAATTAGCTAGAGTGGCAGCTGATAAACTGTTCGGTATGGAACCCACAGATGCAACACCCTATGTTATATTGTCCAACATATATGCCAGAGCTGGTCAGTGGGAAGATGCTGCATGCGTGAAGAAGATTATGAGAGACAGAGGGGTTAGGAAAGAGTCGGGTTACAGTTGGGTTGAAATCAAGCAAAAGATATACAGCTTTGCTTCAAATGATCTAACCAGCCCAATGATAGATGAGATTAAAGACGAGCTAGACAGATTATACAAAGAGATGGATAAACAAGGCTATAAGCCCGACATAACCTGTGCCTTGCATATGGTGGATCATGAGTTAAAGCTGGAGTCGTTAAAATACCACAGTGAGAGATTGGCCATTGCATTTGCTCTGATGAACACCCCAGCTGGGACACCTATCAGGATTATGAAGAATCTGACTGCGTGCCTAGATTGCCATGCTGTCATCAAGATGATATCAAAGATTGTGAACAGAGATATCATCGTAAGAGACTCACGCAGGTTCCACCATTTCAAGGATGGGGTTTGCTCCTGTGGAGACTACTGGTAG
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| CDS seq | ATGCACCCCTCCAAAACCACCGCCACCGTCGTCGCCAATGTCGCCGCCGCGGCCCTCCCCCTCCCCCTCCCCCGTGCCGCCACGCCGCTCGACGCCCGCATGGTCAAGACGGGCTTCGACGTCCTCACCTACCGGCTCAACCTCGGCCTCCGCTCCCTCCTCTCCTCCGGCCACCTTCACCGCGCCCGCGCCATGTTCGACCAAATGCCCCACAAGAACATCTTCTCCCTCAACCTCATCCTCTCCGCCTACTCCAGCTCTGGCGACCTCCCCGCTGCACAACACCTCTTCCTCTCCTCCCCTCATCGCAACGCCACCACCTGGACAATCATGATGAGGGCGCACGCCGCTGCTGGTCGAACCTCCGATGCCTTGTCGCTCTTCCGCGCTATGCTCGGGGAGGGTGTCATTCCAGACCGCGTCACCGTCACCACCGTGCTTAACCTGCCTGGATGCACTGTCCCGTCGCTCCATCCCTTCGCCATCAAGTTCGGCCTCGACACCCATGTTTTCGTCTGCAACACGCTGCTAGACGCCTACTGTAAGCACGGCCTCCTTGCTGCTGCCCGGAGAGTCTTTCTGGAGATGCACGATAAGGACGCAGTCACATACAACGCCATGATGATGGGCTGCTCCAAGGAGGGACTGCACACCCAGGCGCTCCAACTATTTGCTGCTATGCGCCGCGCTGGTATTCCCGCCACCCACTTCACCTTCTCCAGTATTCTCACAGTCGCAGCAGGTATGGCTCATCTCCTCCTTGGGCATCAGGTTCACGCTCTCGTGCTCAGATCCACCTCAGTGCTCAACGTGTTTGTCAACAACTCATTGCTCGATTTCTACTCCAAATGCGATTGCCTTGATGACATGAGGAGACTGTTTGATGAGATGCCAGAGCGGGACAATGTCTCCTATAATGTGATTATTGCAGCCTATGCTTGGAACCAGTGCGCTGCCACGGTGCTGCGGCTGTTCAGGGAGATGCAGAAGCTGGGTTTCGACAGGCAGGTGTTGCCTTATGCTACTATGCTAAGCGTAGCTGGGTCTCTGCCTGACGTGCACATCGGGAAGCAAATACATGCTCAGCTGGTCCTTCTGGGCCTTGCTTCTGAGGATCTTTTGGGCAATGCGCTGATTGACATGTACTCAAAATGCGGCATGCTCGATGCTGCAAAGAGTAACTTTTCTAACAGAAGTGAAAAATCTGCCATTTCATGGACTGCTTTGATCACTGGGTATGTGCAGAATGGACAGCATGAAGAAGCTCTGCAATTGTTCTCTGACATGAGAAGAGCTGGTCTAAGGCCTGACAGGGCAACGTTTTCAAGCATCATCAAGGCTTCCTCAAGCCTCGCAATGATTGGGCTAGGAAGGCAATTGCACTCGTACCTCATTAGGTCAGGCTATAAGTCCAGTGTATTCTCCGGGAGTGTCCTTGTTGACATGTACGCTAAGTGTGGCTGTTTGGACGAGGCACTTCGGACATTTGATGAGATGCCTGAGAGGAATTCCATCTCGTGGAATGCTGTTATTTCAGCCTACGCTCACTATGGAGAGGCAAAGAATGCCATCAAGATGTTTGAAGGCATGCTTCATTGTGGTTTTAATCCAGATTCAGTCACCTTCTTGAGTGTTCTAGCAGCATGCAGTCACAATGGTCTTGCAGATGAATGCATGAAGTACTTTCACTTGATGAAACACCAATATAGTATATCACCCTGGAAGGAACACTATGCTTGTGTTATAGATACATTGGGTCGGGTAGGCTGTTTTTCTCAAGTTCAGAAAATGTTGGTTGAGATGCCATTCAAGGCTGATCCAATAATATGGACCTCCATTCTTCACTCGTGTCGAATTCATGGAAACCAGGAATTAGCTAGAGTGGCAGCTGATAAACTGTTCGGTATGGAACCCACAGATGCAACACCCTATGTTATATTGTCCAACATATATGCCAGAGCTGGTCAGTGGGAAGATGCTGCATGCGTGAAGAAGATTATGAGAGACAGAGGGGTTAGGAAAGAGTCGGGTTACAGTTGGGTTGAAATCAAGCAAAAGATATACAGCTTTGCTTCAAATGATCTAACCAGCCCAATGATAGATGAGATTAAAGACGAGCTAGACAGATTATACAAAGAGATGGATAAACAAGGCTATAAGCCCGACATAACCTGTGCCTTGCATATGGTGGATCATGAGTTAAAGCTGGAGTCGTTAAAATACCACAGTGAGAGATTGGCCATTGCATTTGCTCTGATGAACACCCCAGCTGGGACACCTATCAGGATTATGAAGAATCTGACTGCGTGCCTAGATTGCCATGCTGTCATCAAGATGATATCAAAGATTGTGAACAGAGATATCATCGTAAGAGACTCACGCAGGTTCCACCATTTCAAGGATGGGGTTTGCTCCTGTGGAGACTACTGGTAG
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| Protein seq | MHPSKTTATVVANVAAAALPLPLPRAATPLDARMVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW |
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| Function | Putative pentatricopeptide repeat-containing protein At2g01510 [UniProtKB/Swiss-Prot:Q9S7F4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0101150 | OsNip_01t0101150-00 | Chr01 | 58658 | 61090 | + | RAP2018-11-26 | ||
| CDS seq | ATGCACCCCTCCAAAACCACCGCCACCGTCGTCGCCAATGTCGCCGCCGCGGCCCTCCCCCTCCCCCTCCCCCGTGCCGCCACGCCGCTCGACGCCCGCATGGTCAAGACGGGCTTCGACGTCCTCACCTACCGGCTCAACCTCGGCCTCCGCTCCCTCCTCTCCTCCGGCCACCTTCACCGCGCCCGCGCCATGTTCGACCAAATGCCCCACAAGAACATCTTCTCCCTCAACCTCATCCTCTCCGCCTACTCCAGCTCTGGCGACCTCCCCGCTGCACAACACCTCTTCCTCTCCTCCCCTCATCGCAACGCCACCACCTGGACAATCATGATGAGGGCGCACGCCGCTGCTGGTCGAACCTCCGATGCCTTGTCGCTCTTCCGCGCTATGCTCGGGGAGGGTGTCATTCCAGACCGCGTCACCGTCACCACCGTGCTTAACCTGCCTGGATGCACTGTCCCGTCGCTCCATCCCTTCGCCATCAAGTTCGGCCTCGACACCCATGTTTTCGTCTGCAACACGCTGCTAGACGCCTACTGTAAGCACGGCCTCCTTGCTGCTGCCCGGAGAGTCTTTCTGGAGATGCACGATAAGGACGCAGTCACATACAACGCCATGATGATGGGCTGCTCCAAGGAGGGACTGCACACCCAGGCGCTCCAACTATTTGCTGCTATGCGCCGCGCTGGTATTCCCGCCACCCACTTCACCTTCTCCAGTATTCTCACAGTCGCAGCAGGTATGGCTCATCTCCTCCTTGGGCATCAGGTTCACGCTCTCGTGCTCAGATCCACCTCAGTGCTCAACGTGTTTGTCAACAACTCATTGCTCGATTTCTACTCCAAATGCGATTGCCTTGATGACATGAGGAGACTGTTTGATGAGATGCCAGAGCGGGACAATGTCTCCTATAATGTGATTATTGCAGCCTATGCTTGGAACCAGTGCGCTGCCACGGTGCTGCGGCTGTTCAGGGAGATGCAGAAGCTGGGTTTCGACAGGCAGGTGTTGCCTTATGCTACTATGCTAAGCGTAGCTGGGTCTCTGCCTGACGTGCACATCGGGAAGCAAATACATGCTCAGCTGGTCCTTCTGGGCCTTGCTTCTGAGGATCTTTTGGGCAATGCGCTGATTGACATGTACTCAAAATGCGGCATGCTCGATGCTGCAAAGAGTAACTTTTCTAACAGAAGTGAAAAATCTGCCATTTCATGGACTGCTTTGATCACTGGGTATGTGCAGAATGGACAGCATGAAGAAGCTCTGCAATTGTTCTCTGACATGAGAAGAGCTGGTCTAAGGCCTGACAGGGCAACGTTTTCAAGCATCATCAAGGCTTCCTCAAGCCTCGCAATGATTGGGCTAGGAAGGCAATTGCACTCGTACCTCATTAGGTCAGGCTATAAGTCCAGTGTATTCTCCGGGAGTGTCCTTGTTGACATGTACGCTAAGTGTGGCTGTTTGGACGAGGCACTTCGGACATTTGATGAGATGCCTGAGAGGAATTCCATCTCGTGGAATGCTGTTATTTCAGCCTACGCTCACTATGGAGAGGCAAAGAATGCCATCAAGATGTTTGAAGGCATGCTTCATTGTGGTTTTAATCCAGATTCAGTCACCTTCTTGAGTGTTCTAGCAGCATGCAGTCACAATGGTCTTGCAGATGAATGCATGAAGTACTTTCACTTGATGAAACACCAATATAGTATATCACCCTGGAAGGAACACTATGCTTGTGTTATAGATACATTGGGTCGGGTAGGCTGTTTTTCTCAAGTTCAGAAAATGTTGGTTGAGATGCCATTCAAGGCTGATCCAATAATATGGACCTCCATTCTTCACTCGTGTCGAATTCATGGAAACCAGGAATTAGCTAGAGTGGCAGCTGATAAACTGTTCGGTATGGAACCCACAGATGCAACACCCTATGTTATATTGTCCAACATATATGCCAGAGCTGGTCAGTGGGAAGATGCTGCATGCGTGAAGAAGATTATGAGAGACAGAGGGGTTAGGAAAGAGTCGGGTTACAGTTGGGTTGAAATCAAGCAAAAGATATACAGCTTTGCTTCAAATGATCTAACCAGCCCAATGATAGATGAGATTAAAGACGAGCTAGACAGATTATACAAAGAGATGGATAAACAAGGCTATAAGCCCGACATAACCTGTGCCTTGCATATGGTGGATCATGAGTTAAAGCTGGAGTCGTTAAAATACCACAGTGAGAGATTGGCCATTGCATTTGCTCTGATGAACACCCCAGCTGGGACACCTATCAGGATTATGAAGAATCTGACTGCGTGCCTAGATTGCCATGCTGTCATCAAGATGATATCAAAGATTGTGAACAGAGATATCATCGTAAGAGACTCACGCAGGTTCCACCATTTCAAGGATGGGGTTTGCTCCTGTGGAGACTACTGGTAG
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| Protein seq | MHPSKTTATVVANVAAAALPLPLPRAATPLDARMVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.864910 | 1.028059 | 0.398749 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g01115 | RBH | 0.584897 | 0.691456 | 0.102646 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0101150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017930 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017590 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0000110 | SBH | 1.701038 | 0.997130 | 1.130021 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0017200 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0000110 | SBH | 34.572571 | 1.248855 | 3.801920 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0000900 | RBH | 0.224863 | 1.292076 | 0.567421 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015960 | SBH | 0.499944 | 0.306343 | 0.370378 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0001500 | SBH | 10.5784065 | 1.111239 | 2.5316235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005160 | SBH | 0.063337 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0000100 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013920 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0000090 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015720 | SBH | 0.083414 | 0.767011 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G000110 | RBH | 0.167058 | 0.0 | 0.365445 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0000100 | RBH | 0.530115 | 2.204716 | 0.0 |
