Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_01g0015720 | OGI:01044210 | 13/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr01:14557088-14559721 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgagaagctccggcaccatcagccagcagctcacccgctacgccgcggcgcaggcgctgctcccgggggcgcacctccacgccaacctcctcaagtccggcctcctcgcctcgttccgcaatcacctcatctccttctactccaagtgccgccgcccctgctgcgcccgcagggtgttcgacgaaatccctgacctgtgccacgtctcctggtcatccctcgtcaccgcctactccaacaacggcctgccccggagtgcgatccaggcattccacggcatgcgcgcggagggtgtatgctgcaatgagttctctctccctgttgtgctcaagtgcgtgccggacgcccggctcggtgcgcaggtgcacgccatggcgatggctacggggtttggcagtgacgtcttcgtggcgaacgcgcttgtggccatgtacggtggatttggcttcatggatgatgcgaggagggtgttcgatgaggctggcagcgagaggaacgccgtctcttggaatggcctgatgtcagcgtatgtcaagaatggccagtgcggtgatgccatccaggtgtttggtgagatggtgtggagtgggattcagcctactgaatttgggttctcttgcgtggtgaacgcctgcacgggttccaggaatAtagaggctggaagacaagtgcatggtatggtggtacggatgggctatgacaaggatgtgttcacggccaatgcattggttgacatgtatgtgaaaatggggcgtgttgatattgcttctcttatttttgagaaaatgcctgattcggatgtggtctcttggaatgctttaatttctgggtgcgtacttaatggtcatgatcaccgtgcgatagagttgttactgcagatgaagtcttcaggactggttcccaacgtgtttacgttgtctagcatcctgaaggcttgtgctggtactggggcatttgatttgggtcggcaaatccacgggttcatgatcaaagtcaatgcagattcaaatgattatataggtgttggtcttgtggatatgtatgcaaagaaccattttttggacgatgcaaggaaggtgtttgattggatgttccatagggatttgattctgtgtaatgcactgatatcaggttgttctcatggagggcgacatgatgaggctttgtccctcttttacgagttgagaaaggagggtctcggcgttaataggacaacattggctgctgttctcaagtccacagcaagcttggaggcagccagcaccacaagacaggttcatgctcttgcagagaagataggtttcatatttgacgctcatgttgtcaatgggcttattgattcatattggaagtgcagttgtctcagtgatgcaaacagagtgtttgaagaatgttcttctggtgacattatagcttttacatccatgatcacagcactctcacagtgtgaccatggtgagggtgcaataaagctgttcatggaaatgctaaggaaggggcttgagccagatcctttcgtgctaagtagcctactgaatgcttgtgctagcttatcagcttatgagcaagggaagcaagtccatgctcatctgatcaagcaacggttcatgtcagatgcgtttgcagggaatgctcttgtgtacacatatgctaagtgtggtagcatagaggatgcagagttggctttctccagcctgccagagaggggagttgtctcatggtctgcaatgatcggagggctagcacagcatgggcatgggaagagagcattggaattgtttggcaggatggttgatgaaggcattaatccaaaccacatcaccatgactagtgttctctgtgcttgcaaccatgcaggacttgttgatgaggccaagcggtacttcaattcaatgaaggagatgtttggcattgacaggacggaggaacattactcatgtatgattgatttgcttggccgtgctggtaaactagacgatgcaatggagcttgttaacagcatgccattccaagcaaaagcctcaatttggggggcactactaggagcctcaagagtacacaaagacccagaactgggaaagctggcagctgaaaagctcttcatcctagagcccgagaaatctggtacacatgttctgcttgcaaacacttatgcatctgcaggcatgtggaatgaggtggctaaggtgcgaaagctaatgaaagacagtaacatcaagaaggaacctgccatgagctgggttgaggttaaggacaaggtgcatactttcattgttggtgacaagagccacccattgacaaaagagatatacgcaaagctagatgaattgggagatctaatgagcaaagctggttatgttccaaatgtagacgttgatctccatgatttagacaggagtgaaaaggagttgcttctttctcatcatagtgaaaggctagctgttgcattcgctttgctcagcactccacctggagcacccattagagtcaagaaaaatctgcgcatatgcagagattgccatgtggcatttaagttcatttcaaagattgtttcaagggaaattatcatcagagacatcaaccgattccatcatttcagagatgggacatgttcttgcggtgattactggtag
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| CDS seq | atgagaagctccggcaccatcagccagcagctcacccgctacgccgcggcgcaggcgctgctcccgggggcgcacctccacgccaacctcctcaagtccggcctcctcgcctcgttccgcaatcacctcatctccttctactccaagtgccgccgcccctgctgcgcccgcagggtgttcgacgaaatccctgacctgtgccacgtctcctggtcatccctcgtcaccgcctactccaacaacggcctgccccggagtgcgatccaggcattccacggcatgcgcgcggagggtgtatgctgcaatgagttctctctccctgttgtgctcaagtgcgtgccggacgcccggctcggtgcgcaggtgcacgccatggcgatggctacggggtttggcagtgacgtcttcgtggcgaacgcgcttgtggccatgtacggtggatttggcttcatggatgatgcgaggagggtgttcgatgaggctggcagcgagaggaacgccgtctcttggaatggcctgatgtcagcgtatgtcaagaatggccagtgcggtgatgccatccaggtgtttggtgagatggtgtggagtgggattcagcctactgaatttgggttctcttgcgtggtgaacgcctgcacgggttccaggaatAtagaggctggaagacaagtgcatggtatggtggtacggatgggctatgacaaggatgtgttcacggccaatgcattggttgacatgtatgtgaaaatggggcgtgttgatattgcttctcttatttttgagaaaatgcctgattcggatgtggtctcttggaatgctttaatttctgggtgcgtacttaatggtcatgatcaccgtgcgatagagttgttactgcagatgaagtcttcaggactggttcccaacgtgtttacgttgtctagcatcctgaaggcttgtgctggtactggggcatttgatttgggtcggcaaatccacgggttcatgatcaaagtcaatgcagattcaaatgattatataggtgttggtcttgtggatatgtatgcaaagaaccattttttggacgatgcaaggaaggtgtttgattggatgttccatagggatttgattctgtgtaatgcactgatatcaggttgttctcatggagggcgacatgatgaggctttgtccctcttttacgagttgagaaaggagggtctcggcgttaataggacaacattggctgctgttctcaagtccacagcaagcttggaggcagccagcaccacaagacaggttcatgctcttgcagagaagataggtttcatatttgacgctcatgttgtcaatgggcttattgattcatattggaagtgcagttgtctcagtgatgcaaacagagtgtttgaagaatgttcttctggtgacattatagcttttacatccatgatcacagcactctcacagtgtgaccatggtgagggtgcaataaagctgttcatggaaatgctaaggaaggggcttgagccagatcctttcgtgctaagtagcctactgaatgcttgtgctagcttatcagcttatgagcaagggaagcaagtccatgctcatctgatcaagcaacggttcatgtcagatgcgtttgcagggaatgctcttgtgtacacatatgctaagtgtggtagcatagaggatgcagagttggctttctccagcctgccagagaggggagttgtctcatggtctgcaatgatcggagggctagcacagcatgggcatgggaagagagcattggaattgtttggcaggatggttgatgaaggcattaatccaaaccacatcaccatgactagtgttctctgtgcttgcaaccatgcaggacttgttgatgaggccaagcggtacttcaattcaatgaaggagatgtttggcattgacaggacggaggaacattactcatgtatgattgatttgcttggccgtgctggtaaactagacgatgcaatggagcttgttaacagcatgccattccaagcaaaagcctcaatttggggggcactactaggagcctcaagagtacacaaagacccagaactgggaaagctggcagctgaaaagctcttcatcctagagcccgagaaatctggtacacatgttctgcttgcaaacacttatgcatctgcaggcatgtggaatgaggtggctaaggtgcgaaagctaatgaaagacagtaacatcaagaaggaacctgccatgagctgggttgaggttaaggacaaggtgcatactttcattgttggtgacaagagccacccattgacaaaagagatatacgcaaagctagatgaattgggagatctaatgagcaaagctggttatgttccaaatgtagacgttgatctccatgatttagacaggagtgaaaaggagttgcttctttctcatcatagtgaaaggctagctgttgcattcgctttgctcagcactccacctggagcacccattagagtcaagaaaaatctgcgcatatgcagagattgccatgtggcatttaagttcatttcaaagattgtttcaagggaaattatcatcagagacatcaaccgattccatcatttcagagatgggacatgttcttgcggtgattactggtag
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| Protein seq | MRSSGTISQQLTRYAAAQALLPGAHLHANLLKSGLLASFRNHLISFYSKCRRPCCARRVFDEIPDLCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFSLPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNGQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHGMVVRMGYDKDVFTANALVDMYVKMGRVDIASLIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFTLSSILKACAGTGAFDLGRQIHGFMIKVNADSNDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIAFTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKQRFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQAKASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPLTKEIYAKLDELGDLMSKAGYVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW |
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| Function | Pentatricopeptide repeat-containing protein At3g57430, chloroplastic [UniProtKB/Swiss-Prot:Q7Y211] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_01g0015720 | OsLaMu_01g0015720.01 | Chr01 | 14557088 | 14559721 | + | NAM | ||
| CDS seq | atgagaagctccggcaccatcagccagcagctcacccgctacgccgcggcgcaggcgctgctcccgggggcgcacctccacgccaacctcctcaagtccggcctcctcgcctcgttccgcaatcacctcatctccttctactccaagtgccgccgcccctgctgcgcccgcagggtgttcgacgaaatccctgacctgtgccacgtctcctggtcatccctcgtcaccgcctactccaacaacggcctgccccggagtgcgatccaggcattccacggcatgcgcgcggagggtgtatgctgcaatgagttctctctccctgttgtgctcaagtgcgtgccggacgcccggctcggtgcgcaggtgcacgccatggcgatggctacggggtttggcagtgacgtcttcgtggcgaacgcgcttgtggccatgtacggtggatttggcttcatggatgatgcgaggagggtgttcgatgaggctggcagcgagaggaacgccgtctcttggaatggcctgatgtcagcgtatgtcaagaatggccagtgcggtgatgccatccaggtgtttggtgagatggtgtggagtgggattcagcctactgaatttgggttctcttgcgtggtgaacgcctgcacgggttccaggaatAtagaggctggaagacaagtgcatggtatggtggtacggatgggctatgacaaggatgtgttcacggccaatgcattggttgacatgtatgtgaaaatggggcgtgttgatattgcttctcttatttttgagaaaatgcctgattcggatgtggtctcttggaatgctttaatttctgggtgcgtacttaatggtcatgatcaccgtgcgatagagttgttactgcagatgaagtcttcaggactggttcccaacgtgtttacgttgtctagcatcctgaaggcttgtgctggtactggggcatttgatttgggtcggcaaatccacgggttcatgatcaaagtcaatgcagattcaaatgattatataggtgttggtcttgtggatatgtatgcaaagaaccattttttggacgatgcaaggaaggtgtttgattggatgttccatagggatttgattctgtgtaatgcactgatatcaggttgttctcatggagggcgacatgatgaggctttgtccctcttttacgagttgagaaaggagggtctcggcgttaataggacaacattggctgctgttctcaagtccacagcaagcttggaggcagccagcaccacaagacaggttcatgctcttgcagagaagataggtttcatatttgacgctcatgttgtcaatgggcttattgattcatattggaagtgcagttgtctcagtgatgcaaacagagtgtttgaagaatgttcttctggtgacattatagcttttacatccatgatcacagcactctcacagtgtgaccatggtgagggtgcaataaagctgttcatggaaatgctaaggaaggggcttgagccagatcctttcgtgctaagtagcctactgaatgcttgtgctagcttatcagcttatgagcaagggaagcaagtccatgctcatctgatcaagcaacggttcatgtcagatgcgtttgcagggaatgctcttgtgtacacatatgctaagtgtggtagcatagaggatgcagagttggctttctccagcctgccagagaggggagttgtctcatggtctgcaatgatcggagggctagcacagcatgggcatgggaagagagcattggaattgtttggcaggatggttgatgaaggcattaatccaaaccacatcaccatgactagtgttctctgtgcttgcaaccatgcaggacttgttgatgaggccaagcggtacttcaattcaatgaaggagatgtttggcattgacaggacggaggaacattactcatgtatgattgatttgcttggccgtgctggtaaactagacgatgcaatggagcttgttaacagcatgccattccaagcaaaagcctcaatttggggggcactactaggagcctcaagagtacacaaagacccagaactgggaaagctggcagctgaaaagctcttcatcctagagcccgagaaatctggtacacatgttctgcttgcaaacacttatgcatctgcaggcatgtggaatgaggtggctaaggtgcgaaagctaatgaaagacagtaacatcaagaaggaacctgccatgagctgggttgaggttaaggacaaggtgcatactttcattgttggtgacaagagccacccattgacaaaagagatatacgcaaagctagatgaattgggagatctaatgagcaaagctggttatgttccaaatgtagacgttgatctccatgatttagacaggagtgaaaaggagttgcttctttctcatcatagtgaaaggctagctgttgcattcgctttgctcagcactccacctggagcacccattagagtcaagaaaaatctgcgcatatgcagagattgccatgtggcatttaagttcatttcaaagattgtttcaagggaaattatcatcagagacatcaaccgattccatcatttcagagatgggacatgttcttgcggtgattactggtag
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| Protein seq | MRSSGTISQQLTRYAAAQALLPGAHLHANLLKSGLLASFRNHLISFYSKCRRPCCARRVFDEIPDLCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFSLPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNGQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHGMVVRMGYDKDVFTANALVDMYVKMGRVDIASLIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFTLSSILKACAGTGAFDLGRQIHGFMIKVNADSNDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIAFTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKQRFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQAKASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPLTKEIYAKLDELGDLMSKAGYVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.083414 | 0.767011 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0355100 | RBH | 0.311905 | 0.230367 | 0.190584 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25270 | RBH | 0.210926 | 0.154941 | 0.049060 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0355100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016520 | RBH | 0.061421 | 1.696824 | 0.998238 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016160 | RBH | 0.0 | 0.000000 | 0.515406 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016400 | RBH | 0.0 | 0.782268 | 1.979028 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015850 | RBH | 0.023056 | 0.052556 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015860 | RBH | 4.994762 | 5.363459 | 6.057376 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0242000 | RBH | 2.6050465 | 6.1915355 | 6.369511 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015960 | RBH | 0.499944 | 0.306343 | 0.370378 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0236900 | RBH | 1.457149 | 2.30481 | 4.600044 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015860 | RBH | 0.028785 | 0.042220 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015830 | RBH | 0.461272 | 6.802197 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016060 | RBH | 8.082310 | 5.455865 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015920 | RBH | 0.189971 | 0.140749 | 0.238049 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0002340 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016150 | RBH | 0.336961 | 1.542150 | 1.076994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015940 | RBH | 2.053750 | 3.085919 | 1.908200 |
