Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_01g0017200 | OGI:01046930 | 15/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr01:15975003-15975743 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaccaataatctccacaggaacagcttccatcgctgaaacaatggaaccgatgtgcatctctaacagtaatctgtctgaaagttatggcagagatgattatgatggcattatgacagtctccacgtgtccttagatttttcatcacaagtataggttctccttctactgtattaatcaaaccaaatgctagtgcaagcttcttgctattgtgccttagccttgtctcccctccggcagcatgatcctttgccaaggcccatatcttatctggaacataccctgcaagcttcatcttctctgacatcacctccaagaatttgtacacgtctttgatcctaggatgtgagatatcattggcaacgaaaatatgtactattctgccaagatctatccagctgcagccaggcttctttctgattccccgatttctcaatagtttccggatttgtgcagcctcctcccatttgccaacagtggcataaatatttgagagcaccacatgtgttgatgcactgtaaggagtcaaattgagaatctctttggctgctcttgctctaagatccatgattccatgtgtcctacaagcactcagcgaggaagtccaaccaattgaactaaggttaaaaggcatttctttagtcaactcctcagccttctcaaagttcttggcacgggcaagtacgtcaaccatgcaagagtagtgttcttcgcaaggttcgatgccatatttgtgcttcat
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| CDS seq | atgaagcacaaatatggcatcgaaccttgcgaagaacactactcttgcatggttgacgtacttgcccgtgccaagaactttgagaaggctgaggagttgactaaagaaatgccttttaaccttagttcaattggttggacttcctcgctgagtgcttgtaggacacatggaatcatggatcttagagcaagagcagccaaagagattctcaatttgactccttacagtgcatcaacacatgtggtgctctcaaatatttatgccactgttggcaaatgggaggaggctgcacaaatccggaaactattgagaaatcggggaatcagaaagaagcctggctgcagctggatagatcttggcagaatagtacatattttcgttgccaatgatatctcacatcctaggatcaaagacgtgtacaaattcttggaggtgatgtcagagaagatgaagcttgcagggtatgttccagataagatatgggccttggcaaaggatcatgctgccggaggggagacaaggctaaggcacaatagcaagaagcttgcactagcatttggtttgattaatacagtagaaggagaacctatacttgtgatgaaaaatctaaggacacgtggagactgtcataatgccatcataatcatctctgccataactttcagacagattactgttagagatgcacatcggttccattgtttcagcgatggaagctgttcctgtggagattattggtga
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| Protein seq | MKHKYGIEPCEEHYSCMVDVLARAKNFEKAEELTKEMPFNLSSIGWTSSLSACRTHGIMDLRARAAKEILNLTPYSASTHVVLSNIYATVGKWEEAAQIRKLLRNRGIRKKPGCSWIDLGRIVHIFVANDISHPRIKDVYKFLEVMSEKMKLAGYVPDKIWALAKDHAAGGETRLRHNSKKLALAFGLINTVEGEPILVMKNLRTRGDCHNAIIIISAITFRQITVRDAHRFHCFSDGSCSCGDYW |
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| Function | Pentatricopeptide repeat-containing protein At3g49710 [UniProtKB/Swiss-Prot:Q9M2Y7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_01g0017200 | OsARC_01g0017200.01 | Chr01 | 15975003 | 15975743 | - | NAM | ||
| CDS seq | atgaagcacaaatatggcatcgaaccttgcgaagaacactactcttgcatggttgacgtacttgcccgtgccaagaactttgagaaggctgaggagttgactaaagaaatgccttttaaccttagttcaattggttggacttcctcgctgagtgcttgtaggacacatggaatcatggatcttagagcaagagcagccaaagagattctcaatttgactccttacagtgcatcaacacatgtggtgctctcaaatatttatgccactgttggcaaatgggaggaggctgcacaaatccggaaactattgagaaatcggggaatcagaaagaagcctggctgcagctggatagatcttggcagaatagtacatattttcgttgccaatgatatctcacatcctaggatcaaagacgtgtacaaattcttggaggtgatgtcagagaagatgaagcttgcagggtatgttccagataagatatgggccttggcaaaggatcatgctgccggaggggagacaaggctaaggcacaatagcaagaagcttgcactagcatttggtttgattaatacagtagaaggagaacctatacttgtgatgaaaaatctaaggacacgtggagactgtcataatgccatcataatcatctctgccataactttcagacagattactgttagagatgcacatcggttccattgtttcagcgatggaagctgttcctgtggagattattggtga
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| Protein seq | MKHKYGIEPCEEHYSCMVDVLARAKNFEKAEELTKEMPFNLSSIGWTSSLSACRTHGIMDLRARAAKEILNLTPYSASTHVVLSNIYATVGKWEEAAQIRKLLRNRGIRKKPGCSWIDLGRIVHIFVANDISHPRIKDVYKFLEVMSEKMKLAGYVPDKIWALAKDHAAGGETRLRHNSKKLALAFGLINTVEGEPILVMKNLRTRGDCHNAIIIISAITFRQITVRDAHRFHCFSDGSCSCGDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0101150 | RBH | 0.864910 | 1.028059 | 0.398749 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g28570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0101150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017930 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017590 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017830 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017180 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0242000 | SBH | 2.6050465 | 6.1915355 | 6.369511 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0017330 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0267000 | RBH | 0 | 0.0388245 | 0.036835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0017190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0017170 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0017410 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0017170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0017060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G017580 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0017260 | RBH | 0.0 | 0.0 | 0.679580 |
