Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0014100 | OGI:12069410 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:18450740-18454224 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagtcaggcactactacagcagaatagcagatagcaatatggagacagtacacccaagcatctgcttcagatgcccttaacttctcatctgctctggcaatagttgcttcttgtaccactgcttgctctctagctttccctagctcagtgcgccacatatgagcctcctgaagtgcagcatctctttctttcagcaattgatccttctctttgctcaatctaattaccttttcttcaaactatcatagcagtaatatccatagaccatttggagcatgagaattcagagcattcaaaattcagatattaaataaaactatttaccttgagcatggattgttccatttgtctttccattgcttgtaatgtcttaggcgctcaatctctgaacatagaagtattctatgtccatccatcgtatgagctacagaagcagcagcttccgcggcctctgcagtctgtgttaatttatctgctattttcttaattgtagcatcccgagcacgaatattgttggccaaattctgcaactcctcatctttcacccgaagagtctcctatggaatatgaaaagtagaaaattgttaaaataatgctcgtgaataaaatcaagaataaccaaccacgtgcctagcagcacatgcatgaaaattgaaacctaacaagcaaagatgtaaccatcttaaatgtttagcaatgagaacattgttgaacaaatcataccaaacagtgtaaaattatgtcatacaatattacagcaattttcagactctcaataagggccaaatcttgtctacatataattaaccaggtgtgttctgtggcatgaatttgctacaagtttatacaggatatattaatctgacaatctagcctgaggcaaccaacctaatattacactagcacagattggcagcaacgatgtaaagcattcatttgcccgttctcaatatgtgtttgcagtattgtgcgcaaacaaagagaaatactagtgttatgcacataacataaacataccaaactcaaatcatttgtacacaacatgaaacatcagcttactcttctcgctttgcctctggacaacggcaaatgtcatggcctggttggtgacaatggctgcacaatcttggccgatgctcatcccatcctttcattctcctaggtgcacccttggtggctacacagatgggatctaaaacagatccttcaggcctatgtgatgtttcaccaacctcgtcaacatgcgtgtgcttcttggttgctgcattagaagaacttatttttgatagttgactctccatgtattctttcacctccccaaacaactcacgactattggatgccaagtcaaaaagttcggaccctcgagcattcaattcataataattcttttgtttctctgtccaaacatgcaaatcactttttcgaacagaaggaagaccggcttttgcattcttcgataggcgctgcagcacacaacactttgggatttccttcacctccagatgcttcaataccgagagaatatgcttgcaagggatcccttcacgctccatctttcggcaactgcacctaatatcatggtttcctccaatgcgagtgtaatcaacatagcattttctcgcacttttttgcttagatgttaccatgtacctctcacccttaccatcttgtactacatcaacatggagaccatctaacttctgaagctccttttgaaccagatcaaaatttgcagatgtgaaaatatgccctgcagactattcgatttcatgactatcagtgatagtagcaggccatgattaagatgctttcgaatcaaactcagccactttttcacgcaattcagaaacacatacctcataatgctctactaaatcaagcaaagacatgtaatagtctagatgcctatgaaggcatgaattcaagctctcactcctctggttgcttttcatgcccaaaaaatatgtgttagtcaagaaagcagctgcccacaatttcctctttctatacatccttttcaaccaacccttgtttctagaggttctgtactttaaaacaaaactactccacttttcttcaaattcagcatgcgagcaggcatcatatataaaggacctgaatatctttatttgtgagaaatggaggtgcttactgatacctctctcgatatgccacgagcatacacgatggtcggtatctgggagcacttggcggattgctttcatcattgcattatcgctgtccgttattatagaccttggtttctgctggcacattgctctcaagaacacctgaagaaaccaagtataagattcaacacactcgtcggacacaataccacaggcaaaaatagtggtttgacgatggtggttgagcccaacaaagggaataaatggcatgttatatttgttcatcctttgtgtgctatcaaacacaacaacatcaccgaacgattgatagtccatgcgagactgagcatcacaccaaaacaaatttttcagatgaccttcatcatcaacttggtactcatagaaaaaaccaggatccttgtcccgccttttcttcataagttctaaagttgcacttgcatcaccttccaaaattctagacctcttataccttgatgaataattgtacaagtcctttttgacaaatcccaccttatcgtatcctccatacttgcacttcatgaccttcattatgacatttttccgaataccaatagattctagtgaatgtatttcagatttttggaagtccttaattttcctatgagaccgaagaaatggagtctcgtcgtggctcgtcaatgggtggttatgctcatcaataaaattgtctacaaaccagataccatgtttcttatcaagcttgatgctaagactagcagcgcattccatttgagtcaacgctctttcccttcttacacgatcctcaggttttaccaaactaggatctcgaatcccctccttagagcaaacaaaatgcctgtattcgatggctccaactcttttttcacgcctcacaatatccttcctcacactaaaacctttccttttagcataactattgtagaagttgtaacattcatcttcagtctgaaaattcatttgaactatattccagtactcatctagagctacattatcttcctcaacgctgtggaacacattgtgacttctactaggatcattaggctgagatttattgtggtctccctattataaaaaaaagtatttaaccccaatactatgagctaacgtgatagaaatctaaactacaacatgtataaataattgcataaatacaacaaataaatgataagcactctatggacatgtgcagatagtgaactaaccaaggaacattcagcatagtcatcatcatttgtattggacgaattgtccatgtacgaatcagttgaacaatccttgccacatttagcatcatctttattgcctgtgccacgaaactcacccat
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| CDS seq | atgggtgagtttcgtggcacaggcaataaagatgatgctaaatgtggcaaggattgttcaactgattcgtacatggacaattcgtccaatacaaatgatgatgactatgctgaatgttccttgcaaattcatgccacagaacacacctggttaattatatgtagacaagatttggcccttattgagagtctgaaaattgctgtaatattgtatgacataattttacactgtttggagactcttcgggtgaaagatgaggagttgcagaatttggccaacaatattcgtgctcgggatgctacaattaagaaaatagcagataaattaacacagactgcagaggccgcggaagctgctgcttctgtagctcatacgatggatggacatagaatacttctatgttcagagattgagcgcctaagacattacaagcaatggaaagacaaatggaacaatccatgctcaagattgagcaaagagaaggatcaattgctgaaagaaagagatgctgcacttcaggaggctcatatgtggcgcactgagctagggaaagctagagagcaagcagtggtacaagaagcaactattgccagagcagatgagaagttaagggcatctgaagcagatgcttgggtgtactgtctccatattgctatctgctattctgctgtagtagtgcctgactaa
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| Protein seq | MGEFRGTGNKDDAKCGKDCSTDSYMDNSSNTNDDDYAECSLQIHATEHTWLIICRQDLALIESLKIAVILYDIILHCLETLRVKDEELQNLANNIRARDATIKKIADKLTQTAEAAEAAASVAHTMDGHRILLCSEIERLRHYKQWKDKWNNPCSRLSKEKDQLLKERDAALQEAHMWRTELGKAREQAVVQEATIARADEKLRASEADAWVYCLHIAICYSAVVVPD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0014100 | OsNaBo_12g0014100.01 | Chr12 | 18450740 | 18454224 | - | NAM | ||
| CDS seq | atgggtgagtttcgtggcacaggcaataaagatgatgctaaatgtggcaaggattgttcaactgattcgtacatggacaattcgtccaatacaaatgatgatgactatgctgaatgttccttgcaaattcatgccacagaacacacctggttaattatatgtagacaagatttggcccttattgagagtctgaaaattgctgtaatattgtatgacataattttacactgtttggagactcttcgggtgaaagatgaggagttgcagaatttggccaacaatattcgtgctcgggatgctacaattaagaaaatagcagataaattaacacagactgcagaggccgcggaagctgctgcttctgtagctcatacgatggatggacatagaatacttctatgttcagagattgagcgcctaagacattacaagcaatggaaagacaaatggaacaatccatgctcaagattgagcaaagagaaggatcaattgctgaaagaaagagatgctgcacttcaggaggctcatatgtggcgcactgagctagggaaagctagagagcaagcagtggtacaagaagcaactattgccagagcagatgagaagttaagggcatctgaagcagatgcttgggtgtactgtctccatattgctatctgctattctgctgtagtagtgcctgactaa
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| Protein seq | MGEFRGTGNKDDAKCGKDCSTDSYMDNSSNTNDDDYAECSLQIHATEHTWLIICRQDLALIESLKIAVILYDIILHCLETLRVKDEELQNLANNIRARDATIKKIADKLTQTAEAAEAAASVAHTMDGHRILLCSEIERLRHYKQWKDKWNNPCSRLSKEKDQLLKERDAALQEAHMWRTELGKAREQAVVQEATIARADEKLRASEADAWVYCLHIAICYSAVVVPD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0505950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g32140 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0505950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014460 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0014630 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014520 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0110900 | SBH | 0.034475 | 0.0809475 | 0.00911 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008310 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0287300 | RBH | 0.45946 | 0.213316 | 0.2996655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014420 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014400 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014300 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014310 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
