Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_11g0008310 | OGI:12069410 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr11:7179206-7182975 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTCAGGCACTACTACAGCAGAATAGCAGATAGCAATATGGAGACAGTACACCCAAGCATCTGCTTCAGATGCCCTTAACTTCTCATCTGCTCTGGCAATAGTTGCTTCTTGTACCACTGCTTGCTCTCTAGCTTTCCCTAGCTCAGTGCGCCACATATGAGCCTCCTGAAGTGCAGCATCTCTTTCCTTCAGCAATTGATCCTTCTCTTTGCTCAATCTAATTACCTTTTCTTCAGACTGTCATAGCAGTAATATCCATAGACCATTTGGAGCATGAGAATTCAGAGCATTCAAAATTCAGATATTAAATAAAACTATTTACCTTGACCATGAATTGTTCCATTTGTCTTTCCATTGCTTGTAATGTCTTAGGTGCTCAATCTCTGAACATAGAAGTCTTCTATGTTCATCCATCTTATGAGCTGCAGAAGCAGCAACTTCCGCAGCCTCTGCAGTCTGTGTTAATTTATCTGCTATTTCCTTAATTGTAGCATCCCGAGCACGAATATTGTTGGCCAAATTCTGCAACTCCTCATCTTTCACCCGAAGAGTCTCCTATGGAATATGAAAAGTAGAAAATTGTTAAAATAATGCTCGTGAATAAAATCAAGAATAACCAACCGCGTGCCTAGAAGCACATGCATGAAAATTGAAACCTAACAAGCAAAGATGTAACCATCTTAAATGTTTAGCAATGAGAACATTGTTGAACAAATCATACCAAACAGTGTACATTTATGTCATACAATATTACAACAATTATCAGACTCTCAATAAGGGCCAAATCTTGTCTACATATAATTAACCAGGTGTGTTCTGTGGCATGAATTTGCTACAAGTTTATACAGGATATATTAATCTGACAATCTAGCCTGAGGCAACCAACCTAAAATTGGCAGCAACGATGTAAAGCATTCATAGTACATTCTATTCAGATTAAGAACAATGTTAAAAACTGACAGGGATGCTGCAGTACAATGAGGTTCTATTAAAAAGGACAGAAGCACATAGGTGAGCTACTCTAGTCTGCATTTCATCAAAGCAATAAGTAGAAGCTAACCTACTAGAATTCTTGTTGAAAATAAAAATGGAAGCTATGTGCAGGAACTCATCCTATAAAATCAAATCATCTAAAAAAAACATAGCTACACAATGCCTGAGTAATCTGAATAATATACCACAAGTCCACATCAGCTTACCAAACAAGGTTCCATCAGGACTCCATATACAAATATTTGTCTTTACCTGCATGTGCGCAAACAAAGAGAAATACTAGAGTTATGCACATAACATAAACACACCAAACTCAAACCATTTGTACACAACATGAAACATCAACTTACTCTTCTCGCTTTGCCTCTGGACAACGGCGAATGTCATGGCCTGGTTGGCGACAACGACTGCACAATCTTGGCCGATGCTCATCCCATCCTTTCATTCTCCTAGGTGCACCCTTGGTGGCTACACAGATGGGATCTAAAACAGATCCTTCAGGCCTATGTGATGTTTCACCAACCTCGTCAACATGTGTGTGCTTCTTGGTTGCTGCATTAGAAGAACTTATTTTTGATAGTTGACTCTCCATGTATTCTTTCACCCCCCCAAACAACTCACGACTATTAGATGCGAAGTCAAAAAGTTCGGACCCTCGAGCATTCAATTCATAATAATTCTTTTGTTTCTCTGTCCAAACATGCAAATCACTTTTTCGAACAGAAGGAAGACCGGCTTTTGCATTCTTCGATAGGCGCTGCAGCACACAACACTTTGGGATTTCCTTCACCTCCAGATGCTTCAATACTGAGAGAATATGCTTGCAAGGGATCCCTTCACGCTCCATCTTTCGGCAACTGCACCTAATATCATGGTTTCCTCCAATGCGAGTGTAATCAACATAGCATTTTCTCGCACTTTTTTGCTCAGATGTCACCATGTACCTCTCACCCTTACCATCTGGTACTACATCAACATGGAGACCATCTAACTTCTGAAGCTCCTTTTGAACTAGATCAAAATTTGCAGATGTGAAAATATGCCCTGCAGGCTCTTCAATTTCAGGACTATCAGTGATAGTAGCAGGCCATGATTGAGATGCTTTCGAATCAAACTCAGCCTCTTTTTCACGCAATTCAGAAACACATACCTCATAATGCTCTACTAAATCAAGCAAAGACATGTAATAGTCTAGATGCCTATGAAGGCATGAATTCAAGCTCTCACTCCTCTGGTTGCTTTTCATGCCCAAAAAATATGTGTTAGTCAAGAAAGCAGCTGCCCACAATTTCCTCTTTCTATACATCCTTTTCAACCAACCCTTGTTTCTAGAGGTTCTGTACTTTAAAACAAAACTACTCCACTTTTCTTCAAATTCAGCATGTGAGCAGGCATCATATATAAAGGACCTGAATATCTTTATTTGTGAAAAATGGAGGTGCTTACTGATACCTCTCTCGATATGCCACGAGCATACACGATGGTCGGTATCTGGGAGCACTTGGCGGATTGCTTTCATCATTGCATTATCGCTGTCCGTTATTATAGACCTTGGTTTCTGCTGGCACATTGCTCTCAAGAACACCTGAAGCAACCAAGTATAAGATTCAACACACTCGTCGGACACAATACCACAGGCAAAAATAGTGGTTTGACGATGGTGGTTGAGCCCAACAAAGGGAATAAATGGCATGTTATATTTGTTCATCCTTTGTGTGCTATCAAACACAACAACATCACCGAACGATTGATAGTCCATGCGAGACTGAGCATCACACCAAAACAGATTTTTCAGACGACCTTCATCATCAACTTGGTACTCATAGAAAAAATCAGGATCCTTGTCCCGCCTTTTCTTCATAAGTTCTAAAGTTGCACTTGCATCACCTTCCAAAATTCTAGACCTCTTATACCTTGATGAATAATTGTACAAGTCCTTTTTGACAAATCCCACCTTATCGTATCCTCCATACTTGCACTTCATGACCTTCATTATGACATTTTTCCGAATACCAATAGATTCTAGTGAATGTATTTCAGATTTTTGAAAGTCCTTAATTTTCCTATGAGACCGAAGAAATGGAGTCTCGTCGTGGCTCGTCAATGGGTGGTTATGCTCATCAATAAAATTGTCTACAAACCAGATACCACGTTTCTTATCAAGCTTGATGCTAAGACTAGCAGGGCATTCCATTCGAGTCAACGCTCTTTCCCTTCTTACACGATCCTCAGGTTTTACCAAACTAGGATCTCGAATCCCCTCCTTAGAGCAAACAAAACGCCTGTATTCGATGGCTCCAACTCTTTTTTCACGCCTCACAATATCCTTCCTCACACTAAAACCTTTCCTTTTAGCATAACTATTGTAGAAGTTGTAACATTCATCTTCAGTCTGAAAATTCATTTGAACTATATTCCAGTACTCATCTAGAGCTACATAATCTTCCTCAACGCTGTGGAACACATTGTGACTGCTACTAGGATCATTAGGCTGAGATTTATTGTGGTCTCCCTATTATAAAAAAAAGTATTTAACCCCAATACTATGAGCTAACGTGATAGAAATCTAAACTACAACATGTATAAATAATTGCATAAATCCAACAAATAAATGATAAGCGAGTCTGGACATGTGCAGATAGTGAACTAACCAAGGAACATTCAGCATAGTCATCATCATTTGTATTGGACGAATTGTCCATGTACGAATCAGTTGAACAATCCTTGCCACATTTAGCATCATCTTCATTGCCTGTGCCACGAAACTCACCCAT
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| CDS seq | ATGGGTGAGTTTCGTGGCACAGGCAATGAAGATGATGCTAAATGTGGCAAGGATTGTTCAACTGATTCGTACATGGACAATTCGTCCAATACAAATGATGATGACTATGCTGAATGTTCCTTGGTAAAGACAAATATTTGTATATGGAGTCCTGATGGAACCTTGTTTGAACACACCTGGTTAATTATATGTAGACAAGATTTGGCCCTTATTGAGAGTCTGATAATTGTTGTAATATTGTATGACATAAATGTACACTGTTTGGAGACTCTTCGGGTGAAAGATGAGGAGTTGCAGAATTTGGCCAACAATATTCGTGCTCGGGATGCTACAATTAAGGAAATAGCAGATAAATTAACACAGACTGCAGAGGCTGCGGAAGTTGCTGCTTCTGCAGCTCATAAGATGGATGAACATAGAAGACTTCTATGTTCAGAGATTGAGCACCTAAGACATTACAAGCAATGGAAAGACAAATGGAACAATTCATGGTCAAGATTGAGCAAAGAGAAGGATCAATTGCTGAAGGAAAGAGATGCTGCACTTCAGGAGGCTCATATGTGGCGCACTGAGCTAGGGAAAGCTAGAGAGCAAGCAGTGGTACAAGAAGCAACTATTGCCAGAGCAGATGAGAAGTTAAGGGCATCTGAAGCAGATGCTTGGGTGTACTGTCTCCATATTGCTATCTGCTATTCTGCTGTAGTAGTGCCTGACTAA
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| Protein seq | MGEFRGTGNEDDAKCGKDCSTDSYMDNSSNTNDDDYAECSLVKTNICIWSPDGTLFEHTWLIICRQDLALIESLIIVVILYDINVHCLETLRVKDEELQNLANNIRARDATIKEIADKLTQTAEAAEVAASAAHKMDEHRRLLCSEIEHLRHYKQWKDKWNNSWSRLSKEKDQLLKERDAALQEAHMWRTELGKAREQAVVQEATIARADEKLRASEADAWVYCLHIAICYSAVVVPD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_11g0008310 | OsIR64_11g0008310.01 | Chr11 | 7179206 | 7182975 | - | NAM | ||
| CDS seq | ATGGGTGAGTTTCGTGGCACAGGCAATGAAGATGATGCTAAATGTGGCAAGGATTGTTCAACTGATTCGTACATGGACAATTCGTCCAATACAAATGATGATGACTATGCTGAATGTTCCTTGGTAAAGACAAATATTTGTATATGGAGTCCTGATGGAACCTTGTTTGAACACACCTGGTTAATTATATGTAGACAAGATTTGGCCCTTATTGAGAGTCTGATAATTGTTGTAATATTGTATGACATAAATGTACACTGTTTGGAGACTCTTCGGGTGAAAGATGAGGAGTTGCAGAATTTGGCCAACAATATTCGTGCTCGGGATGCTACAATTAAGGAAATAGCAGATAAATTAACACAGACTGCAGAGGCTGCGGAAGTTGCTGCTTCTGCAGCTCATAAGATGGATGAACATAGAAGACTTCTATGTTCAGAGATTGAGCACCTAAGACATTACAAGCAATGGAAAGACAAATGGAACAATTCATGGTCAAGATTGAGCAAAGAGAAGGATCAATTGCTGAAGGAAAGAGATGCTGCACTTCAGGAGGCTCATATGTGGCGCACTGAGCTAGGGAAAGCTAGAGAGCAAGCAGTGGTACAAGAAGCAACTATTGCCAGAGCAGATGAGAAGTTAAGGGCATCTGAAGCAGATGCTTGGGTGTACTGTCTCCATATTGCTATCTGCTATTCTGCTGTAGTAGTGCCTGACTAA
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| Protein seq | MGEFRGTGNEDDAKCGKDCSTDSYMDNSSNTNDDDYAECSLVKTNICIWSPDGTLFEHTWLIICRQDLALIESLIIVVILYDINVHCLETLRVKDEELQNLANNIRARDATIKEIADKLTQTAEAAEVAASAAHKMDEHRRLLCSEIEHLRHYKQWKDKWNNSWSRLSKEKDQLLKERDAALQEAHMWRTELGKAREQAVVQEATIARADEKLRASEADAWVYCLHIAICYSAVVVPD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0505950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0505950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014460 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0014630 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008330 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014320 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0110900 | RBH | 0.034475 | 0.0809475 | 0.00911 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008370 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008420 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0065870 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014310 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014100 | RBH | 0.0 | 0.0 | 0.0 |
