Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0006950 | OGI:12016520 | 7/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:6027388-6030878 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcaaaggaaaactagaagaagatatatattaataattgaccatacacatatagaagtaaaggataattgatcactaggcatgtagctgatgatatccttttggtgttcttgaacaatgcagaagacgaagaaatagatatgAaaattatgattcatttggtcctatacagatataagggAaatggatcactgactcatagctagctagctgttcccgccgttgctttcgttttgatgtagttttccttaatcttcttcagtgtcactaccacatcagacattgccatcctttgctctggggagtcagctgagcagagcaagccgagctcgaccacttgcatcaggaagccatgaaaggtatttgtacaagaagagccatcctgtagaagctggccgtctacaacgtggataaggtctgcaggaaatgccctgcgaacccactgccttaggctcagttctcctacaaacatagcatctgtcggtctcttcctggtgaacacttcaagcagcataatcccgtagctgtacacatcgctcttccgtgatgcttttccaagagacccatactctactcaaggaaaaataattacaaattaataaatgattgcaccattattagttatcaaaagatcaactgtgtactttaccaagaataaataaatcaatgagtacctggcgccatgtaccctactgttcctggcatacttgcagaaatcattgagttgtcatcacctaacaacagcctcgcaatgccaaaatctgccacatgtcctgtcatatcatcatcaaataaaacgttgctaggcttcaagtcgcagtgtaggaccacctcacagtgctcatggtgcaagtattccattgccattgacacatctagcataatatccaacctctcgaggaaacttaattgcattctttgttcagagtgcagaactgcatctaagcttccgttgggcatgtactgtagaaccagcgctctgaagtccaggttggagcaagtgttcaatatccttattaagttgcggtgtcgagccattcgaagcacatgacactcggtatcaaagcttcttatggcatgttctagatgctgatgtataatttttattgcaaccaccaaaccattgtctagctggcccttaaaaacttttccaaagcttccagaccccaacttattatcatcactgaaatcatcagtagcacgaacaagctcatgataggacagtaattgatggttaatcttgtcaacgtcaccaccagaaacctcttggtgcttgtctttccttttaagaagtacatacaggcaacaagctatagctccaactactatgattacagtagggagtaagaattttattagcttgtggccatttcttttcgaagaggttgtttggcacggtgaaaatcctaaacgggcgacaccacatagccttgagttccccaccaaggattccagcgtgatgtttgagaagacacctccttctggtatttggccttgcagcttattgaaagacaggttcaagctagtaaggatgctaaaattggccaggtacttggggatggtaccagaaatgttgttatgggataaatccaaagtttgtaggctggttaggctacgaaaggaatctggaattgagttttgtatcgaattgactgataggttcaaataggttatcatctgaatttgcccaatcgattctgggaggctacttgtaaagcggttggtagagagatccaagacgttaatttgcttcaaataacctatatcggccggtaatgcaccagtcaaaaggtttcgagatagatctagctggaagaggctacctagatgaaataagctcgacggtatcgtggacgataattggttatcagacaaaagtagctcccctaacttggtgaggttaccaatgccgttaggtatggagccagataattcattgctttgaaggtataatttttctacactcattagcataccgatatttgacgggatggaaccagaaaggcgattttcttcaagttgaatcaattggaggttctccatcgtcatgattgattctggaattgcaccttgcagctggctttctgaaatatctagcatctcgagactagtcaagtttgaaatcgatgatgggataccaccagataccctgtttccatatgctacgaacgcttgcaacgtggttgacaagttccccacatattctgggatgctcccggtgaaataattcgagttgatttgaaggatggagagctgcctacagttggacagagtagacaagaacttgagatccccctgtaaacggttttgggcaattacaagggctgtcaaagagttgatgttaccaattgatgccggcactgatccatccaactggtttacactcagtaccaggcgttgtaatgaagaaatgttgccaagagaagcaggaatcggtccagttagttggttcctggaaagatacagttgtgacagttggccaagctgtccaatatcggatGggatgtcacctgttaggttgcaccagttgaggtccagggtatttagcatggtgatgttgctaagtccagcagggatcgggccagcatcaagctgattccaacccaatcctacaaaattaagattcctcaacttgcccagccatggtggcaaggcaccctcgaagagattttgacgcagggaaagatgtttgaggtgtagacacgctgcgagcccctgtggaatctggccagtaaaactgttGgtatcgatggagaaccattgtagaacagggagactgaaactgtcattgctggggattaggccggttaacccgttggaggcaagagcaatggtgcgcagcgtagacatgttgaagattgccggtggcactggaccggtgaggttgttgttctgcagaatgagcacctcgagcctcggcaaggcgccgatgcaacctggtattggtcctaacaacccattgttggccatcaccagacgagttaataggggcgtgttgttgaatagatcgtttggtatgaagccagtgaggtgatttgtctggatatttaagccacgaaggtcatgtaggttgcgtagatcagccatgatcggaccagataggccattagacttgaggttaaaaagctgtagcctcgtgaggttccccagtgcggctgggattcctcctgacagtgcattgaagctaagatccaggatcctgaggaggctcagccttcctatgtcgaccgggagtgatcccgtgaggttggttttggtgaggttgaggacggtgaggaaagagaggttaccgagatgcgggctgagccctccgtggaggggaactcccggcagttccacggcggtgacgcgttgctgccggtgccggcggccgccgcaagagactcccacccagcggcagaagggcgtgccgacggtccagtttccggcgaggacgccgaggggatcggacacctctgctttgaaagctagcagcgcagcgaggtcgtccat
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| CDS seq | atggacgacctcgctgcgctgctagctttcaaagcagaggtgtccgatcccctcggcgtcctcgccggaaactggaccgtcggcacgcccttctgccgctgggtgggagtctcttgcggcggccgccggcaccggcagcaacgcgtcaccgccgtggaactgccgggagttcccctccacggagggctcagcccgcatctcggtaacctctctttcctcaccgtcctcaacctcaccaaaaccaacctcacgggatcactcccggtcgacataggaaggctgagcctcctcaggatcctggatcttagcttcaatgcactgtcaggaggaatcccagccgcactggggaacctcacgaggctacagctttttaacctcaagtctaatggcctatctggtccgatcatggctgatctacgcaacctacatgaccttcgtggcttaaatatccagacaaatcacctcactggcttcataccaaacgatctattcaacaacacgcccctattaactcgtctggtgatggccaacaatgggttgttaggaccaataccaggttgcatcggcgccttgccgaggctcgaggtgctcattctgcagaacaacaacctcaccggtccagtgccaccggcaatcttcaacatgtctacgctgcgcaccattgctcttgcctccaacgggttaaccggcctaatccccagcaatgacagtttcagtctccctgttctacaatggttctccatcgatacCaacagttttactggccagattccacaggggctcgcagcgtgtctacacctcaaacatctttccctgcgtcaaaatctcttcgagggtgccttgccaccatggctgggcaagttgaggaatcttaattttgtaggattgggttggaatcagcttgatgctggcccgatccctgctggacttagcaacatcaccatgctaaataccctggacctcaactggtgcaacctaacaggtgacatccCatccgatattggacagcttggccaactgtcacaactgtatctttccaggaaccaactaactggaccgattcctgcttctcttggcaacatttcttcattacaacgcctggtactgagtgtaaaccagttggatggatcagtgccggcatcaattggtaacatcaactctttgacagcccttgtaattgcccaaaaccgtttacagggggatctcaagttcttgtctactctgtccaactgtaggcagctctccatccttcaaatcaactcgaattatttcaccgggagcatcccagaatatgtggggaacttgtcaaccacgttgcaagcgttcgtagcatatggaaacagggtatctggtggtatcccatcatcgatttcaaacttgactagtctcgagatgctagatatttcagaaagccagctgcaaggtgcaattccagaatcaatcatgacgatggagaacctccaattgattcaacttgaagaaaatcgcctttctggttccatcccgtcaaatatcggtatgctaatgagtgtagaaaaattataccttcaaagcaatgaattatctggctccatacctaacggcattggtaacctcaccaagttaggggagctacttttgtctgataaccaattatcgtccacgataccgtcgagcttatttcatctaggtagcctcttccagctagatctatctcgaaaccttttgactggtgcattaccggccgatataggttatttgaagcaaattaacgtcttggatctctctaccaaccgctttacaagtagcctcccagaatcgattgggcaaattcagatgataacctatttgaacctatcagtcaattcgatacaaaactcaattccagattcctttcgtagcctaaccagcctacaaactttggatttatcccataacaacatttctggtaccatccccaagtacctggccaattttagcatccttactagcttgaacctgtctttcaataagctgcaaggccaaataccagaaggaggtgtcttctcaaacatcacgctggaatccttggtggggaactcaaggctatgtggtgtcgcccgtttaggattttcaccgtgccaaacaacctcttcgaaaagaaatggccacaagctaataaaattcttactccctactgtaatcatagtagttggagctatagcttgttgcctgtatgtacttcttaaaaggaaagacaagcaccaagaggtttctggtggtgacgttgacaagattaaccatcaattactgtcctatcatgagcttgttcgtgctactgatgatttcagtgatgataataagttggggtctggaagctttggaaaagtttttaagggccagctagacaatggtttggtggttgcaataaaaattatacatcagcatctagaacatgccataagaagctttgataccgagtgtcatgtgcttcgaatggctcgacaccgcaacttaataaggatattgaacacttgctccaacctggacttcagagcgctggttctacagtacatgcccaacggaagcttagatgcagttctgcactctgaacaaagaatgcaattaagtttcctcgagaggttggatattatgctagatgtgtcaatggcaatggaatacttgcaccatgagcactgtgaggtggtcctacactgcgacttgaagcctagcaacgttttatttgatgatgatatgacaggacatgtggcagattttggcattgcgaggctgttgttaggtgatgacaactcaatgatttctgcaagtatgccaggaacagtagggtacatggcgccagagtatgggtctcttggaaaagcatcacggaagagcgatgtgtacagctacgggattatgctgcttgaagtgttcaccaggaagagaccgacagatgctatgtttgtaggagaactgagcctaaggcagtgggttcgcagggcatttcctgcagaccttatccacgttgtagacggccagcttctacaggatggctcttcttgtacaaatacctttcatggcttcctgatgcaagtggtcgagctcggcttgctctgctcagctgactccccagagcaaaggatggcaatgtctgatgtggtagtgacactgaagaagattaaggaaaactacatcaaaacgaaagcaacggcgggaacagctagctag
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| Protein seq | MDDLAALLAFKAEVSDPLGVLAGNWTVGTPFCRWVGVSCGGRRHRQQRVTAVELPGVPLHGGLSPHLGNLSFLTVLNLTKTNLTGSLPVDIGRLSLLRILDLSFNALSGGIPAALGNLTRLQLFNLKSNGLSGPIMADLRNLHDLRGLNIQTNHLTGFIPNDLFNNTPLLTRLVMANNGLLGPIPGCIGALPRLEVLILQNNNLTGPVPPAIFNMSTLRTIALASNGLTGLIPSNDSFSLPVLQWFSIDTNSFTGQIPQGLAACLHLKHLSLRQNLFEGALPPWLGKLRNLNFVGLGWNQLDAGPIPAGLSNITMLNTLDLNWCNLTGDIPSDIGQLGQLSQLYLSRNQLTGPIPASLGNISSLQRLVLSVNQLDGSVPASIGNINSLTALVIAQNRLQGDLKFLSTLSNCRQLSILQINSNYFTGSIPEYVGNLSTTLQAFVAYGNRVSGGIPSSISNLTSLEMLDISESQLQGAIPESIMTMENLQLIQLEENRLSGSIPSNIGMLMSVEKLYLQSNELSGSIPNGIGNLTKLGELLLSDNQLSSTIPSSLFHLGSLFQLDLSRNLLTGALPADIGYLKQINVLDLSTNRFTSSLPESIGQIQMITYLNLSVNSIQNSIPDSFRSLTSLQTLDLSHNNISGTIPKYLANFSILTSLNLSFNKLQGQIPEGGVFSNITLESLVGNSRLCGVARLGFSPCQTTSSKRNGHKLIKFLLPTVIIVVGAIACCLYVLLKRKDKHQEVSGGDVDKINHQLLSYHELVRATDDFSDDNKLGSGSFGKVFKGQLDNGLVVAIKIIHQHLEHAIRSFDTECHVLRMARHRNLIRILNTCSNLDFRALVLQYMPNGSLDAVLHSEQRMQLSFLERLDIMLDVSMAMEYLHHEHCEVVLHCDLKPSNVLFDDDMTGHVADFGIARLLLGDDNSMISASMPGTVGYMAPEYGSLGKASRKSDVYSYGIMLLEVFTRKRPTDAMFVGELSLRQWVRRAFPADLIHVVDGQLLQDGSSCTNTFHGFLMQVVELGLLCSADSPEQRMAMSDVVVTLKKIKENYIKTKATAGTAS |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0006950 | OsNaBo_12g0006950.01 | Chr12 | 6027388 | 6030878 | - | NAM | ||
| CDS seq | atggacgacctcgctgcgctgctagctttcaaagcagaggtgtccgatcccctcggcgtcctcgccggaaactggaccgtcggcacgcccttctgccgctgggtgggagtctcttgcggcggccgccggcaccggcagcaacgcgtcaccgccgtggaactgccgggagttcccctccacggagggctcagcccgcatctcggtaacctctctttcctcaccgtcctcaacctcaccaaaaccaacctcacgggatcactcccggtcgacataggaaggctgagcctcctcaggatcctggatcttagcttcaatgcactgtcaggaggaatcccagccgcactggggaacctcacgaggctacagctttttaacctcaagtctaatggcctatctggtccgatcatggctgatctacgcaacctacatgaccttcgtggcttaaatatccagacaaatcacctcactggcttcataccaaacgatctattcaacaacacgcccctattaactcgtctggtgatggccaacaatgggttgttaggaccaataccaggttgcatcggcgccttgccgaggctcgaggtgctcattctgcagaacaacaacctcaccggtccagtgccaccggcaatcttcaacatgtctacgctgcgcaccattgctcttgcctccaacgggttaaccggcctaatccccagcaatgacagtttcagtctccctgttctacaatggttctccatcgatacCaacagttttactggccagattccacaggggctcgcagcgtgtctacacctcaaacatctttccctgcgtcaaaatctcttcgagggtgccttgccaccatggctgggcaagttgaggaatcttaattttgtaggattgggttggaatcagcttgatgctggcccgatccctgctggacttagcaacatcaccatgctaaataccctggacctcaactggtgcaacctaacaggtgacatccCatccgatattggacagcttggccaactgtcacaactgtatctttccaggaaccaactaactggaccgattcctgcttctcttggcaacatttcttcattacaacgcctggtactgagtgtaaaccagttggatggatcagtgccggcatcaattggtaacatcaactctttgacagcccttgtaattgcccaaaaccgtttacagggggatctcaagttcttgtctactctgtccaactgtaggcagctctccatccttcaaatcaactcgaattatttcaccgggagcatcccagaatatgtggggaacttgtcaaccacgttgcaagcgttcgtagcatatggaaacagggtatctggtggtatcccatcatcgatttcaaacttgactagtctcgagatgctagatatttcagaaagccagctgcaaggtgcaattccagaatcaatcatgacgatggagaacctccaattgattcaacttgaagaaaatcgcctttctggttccatcccgtcaaatatcggtatgctaatgagtgtagaaaaattataccttcaaagcaatgaattatctggctccatacctaacggcattggtaacctcaccaagttaggggagctacttttgtctgataaccaattatcgtccacgataccgtcgagcttatttcatctaggtagcctcttccagctagatctatctcgaaaccttttgactggtgcattaccggccgatataggttatttgaagcaaattaacgtcttggatctctctaccaaccgctttacaagtagcctcccagaatcgattgggcaaattcagatgataacctatttgaacctatcagtcaattcgatacaaaactcaattccagattcctttcgtagcctaaccagcctacaaactttggatttatcccataacaacatttctggtaccatccccaagtacctggccaattttagcatccttactagcttgaacctgtctttcaataagctgcaaggccaaataccagaaggaggtgtcttctcaaacatcacgctggaatccttggtggggaactcaaggctatgtggtgtcgcccgtttaggattttcaccgtgccaaacaacctcttcgaaaagaaatggccacaagctaataaaattcttactccctactgtaatcatagtagttggagctatagcttgttgcctgtatgtacttcttaaaaggaaagacaagcaccaagaggtttctggtggtgacgttgacaagattaaccatcaattactgtcctatcatgagcttgttcgtgctactgatgatttcagtgatgataataagttggggtctggaagctttggaaaagtttttaagggccagctagacaatggtttggtggttgcaataaaaattatacatcagcatctagaacatgccataagaagctttgataccgagtgtcatgtgcttcgaatggctcgacaccgcaacttaataaggatattgaacacttgctccaacctggacttcagagcgctggttctacagtacatgcccaacggaagcttagatgcagttctgcactctgaacaaagaatgcaattaagtttcctcgagaggttggatattatgctagatgtgtcaatggcaatggaatacttgcaccatgagcactgtgaggtggtcctacactgcgacttgaagcctagcaacgttttatttgatgatgatatgacaggacatgtggcagattttggcattgcgaggctgttgttaggtgatgacaactcaatgatttctgcaagtatgccaggaacagtagggtacatggcgccagagtatgggtctcttggaaaagcatcacggaagagcgatgtgtacagctacgggattatgctgcttgaagtgttcaccaggaagagaccgacagatgctatgtttgtaggagaactgagcctaaggcagtgggttcgcagggcatttcctgcagaccttatccacgttgtagacggccagcttctacaggatggctcttcttgtacaaatacctttcatggcttcctgatgcaagtggtcgagctcggcttgctctgctcagctgactccccagagcaaaggatggcaatgtctgatgtggtagtgacactgaagaagattaaggaaaactacatcaaaacgaaagcaacggcgggaacagctagctag
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| Protein seq | MDDLAALLAFKAEVSDPLGVLAGNWTVGTPFCRWVGVSCGGRRHRQQRVTAVELPGVPLHGGLSPHLGNLSFLTVLNLTKTNLTGSLPVDIGRLSLLRILDLSFNALSGGIPAALGNLTRLQLFNLKSNGLSGPIMADLRNLHDLRGLNIQTNHLTGFIPNDLFNNTPLLTRLVMANNGLLGPIPGCIGALPRLEVLILQNNNLTGPVPPAIFNMSTLRTIALASNGLTGLIPSNDSFSLPVLQWFSIDTNSFTGQIPQGLAACLHLKHLSLRQNLFEGALPPWLGKLRNLNFVGLGWNQLDAGPIPAGLSNITMLNTLDLNWCNLTGDIPSDIGQLGQLSQLYLSRNQLTGPIPASLGNISSLQRLVLSVNQLDGSVPASIGNINSLTALVIAQNRLQGDLKFLSTLSNCRQLSILQINSNYFTGSIPEYVGNLSTTLQAFVAYGNRVSGGIPSSISNLTSLEMLDISESQLQGAIPESIMTMENLQLIQLEENRLSGSIPSNIGMLMSVEKLYLQSNELSGSIPNGIGNLTKLGELLLSDNQLSSTIPSSLFHLGSLFQLDLSRNLLTGALPADIGYLKQINVLDLSTNRFTSSLPESIGQIQMITYLNLSVNSIQNSIPDSFRSLTSLQTLDLSHNNISGTIPKYLANFSILTSLNLSFNKLQGQIPEGGVFSNITLESLVGNSRLCGVARLGFSPCQTTSSKRNGHKLIKFLLPTVIIVVGAIACCLYVLLKRKDKHQEVSGGDVDKINHQLLSYHELVRATDDFSDDNKLGSGSFGKVFKGQLDNGLVVAIKIIHQHLEHAIRSFDTECHVLRMARHRNLIRILNTCSNLDFRALVLQYMPNGSLDAVLHSEQRMQLSFLERLDIMLDVSMAMEYLHHEHCEVVLHCDLKPSNVLFDDDMTGHVADFGIARLLLGDDNSMISASMPGTVGYMAPEYGSLGKASRKSDVYSYGIMLLEVFTRKRPTDAMFVGELSLRQWVRRAFPADLIHVVDGQLLQDGSSCTNTFHGFLMQVVELGLLCSADSPEQRMAMSDVVVTLKKIKENYIKTKATAGTAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 4.084941 | 0.579358 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0620000 | SBH | 0.941294 | 0.874327 | 0.567675 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g13300 | SBH | 0.000000 | 0.0 | 0.313589 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0620000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0014090 | SBH | 0.146151 | 0.000000 | 1.201783 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007690 | SBH | 0.000000 | 0.000000 | 0.236293 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0014150 | SBH | 0.654747 | 0.538009 | 2.992458 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013960 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006980 | RBH | 0.0 | 10.490688 | 0.718828 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0105100 | SBH | 1.570126 | 3.004827 | 1.531421 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006950 | RBH | 0.0 | 0.085676 | 0.043985 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0094900 | SBH | 0.209193 | 2.515343 | 2.3913045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006820 | RBH | 0.0 | 0.043365 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006970 | RBH | 0.0 | 2.253475 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007020 | RBH | 0.0 | 0.0 | 0.164318 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000560 | SBH | 0.0 | 2.947822 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020580 | SBH | 0.189537 | 0.842129 | 1.072629 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006940 | SBH | 0.152372 | 0.0 | 0.377484 |
