Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0006820 | OGI:12016520 | 7/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:5892403-5895366 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcaaaggaaaactagaagaagatatatattaataattgaccatacacatatagaagtaaaggataattgatcactaggcatgtagctgatgatatccttttggtgttcttgaacaatgcagaagacgaagaaatagatatgaaaattatgattcatttggtcctatacagatataagggaaatggatcactgactcatagctagctagctgttcccggcgttgctttcgttttgatgtagttttccttaatcttcttcagtgtcactaccacatcagacattgccatcctttgctctggggagtcagctgagcagagcaagccgagctcgaccacttgcatcaggaagccatgaaaggtatttgtacaagaagagccatcctgtagaagctggccatctacaacgtggataaggtccgcaggaaatgccctgcgaacccactgccttaggctcagttctcctacaaacatagcatctgtcggtctcttcctggtgaacacttcaagcagcataatcccgtagctgtacacatcgctcttccgtgatgcttttccaagagacccatactctactcaagaaaaaataattacaaattaataaatgattgcaccattattagttatcaaaagatcaactgtgtactttaccaagaataaataaatcaatgagtacctggcgccatgtaccctactgttcctggcatacttgcagaaatcattgagttgccatcacctaacaacagcctcgcaatgccaaaatctgccacatgtcctgtcatatcatcatcaaataaaacgttgctaggcttcaagtcgcagtgtaggaccacctcacagtgctcatggtgcaagtattccattgccattgacacatctagcataatatccaacctctcgaggaaacttaattgcattctttgttcagagtgcagaactgcatctaagcttccgttgggcatgtactgtagaaccagcggtctgaagtccaggttggagcaagtgttcaatatccttattaagttgcggtgtcgggccattcgaagcacatgacactcggtatcaaagcttcttatggcatgttctagatgctgatgtataacttttattgcaaccaccaaaccattgtctagctggcccttaaaaacttttccaaagcttccagaccccaacttattatcatcactgaaatcatcagtagcacgaacaagctcatgataggacagtaattgatggttaatcttgtcaacgtcaccaccagaaacctcttggtgcttgtctttccttttaagaagtacatacaggcaacaagctatagctccaactactatgattacagtagggagtaagaattttattagcttgtggccatttcttttcgaagaggttgtttggcacggtgaaaatcctaaacgggcgacaccacatagccttgagttccccaccaaggattccagcgtgatgtttgagaagacacctccttctggtatttggccttgcagcttattgaaagacaggttcaagctagtaaggatgctaaaattggccaggtacttggggatggtaccagaaatgttgttatgggataaatccaaagtttgtaggctggttaggctacgaaaggaatctggaattgagttttgtatcgaattgactgataggttcaaataggttatcatctgaatttgcccaatcgattctgggaggctacttgtaaagcggttggtagagagatccaagacgttaatttgcttcaaataacctatatcggccggtaatgcaccagtcaaaaggtttcgagatagatctagctggaagaggctacctagatgaaataagctcgacggtatcgtggacgataattggttatcagacaaaagtagcttccctaacttggtgaggttaccaatgccgttaggtatggagccagataattcattgctttgaaggtataatttttctacactcattagcataccgatatttgacgggatggaaccagaaaggcgattttcttcaagttgaatcaattggaggttctccatcgtcatgattgattctggaattgcaccttgcagctggctttctgaaatatctagcatctcgagactagtcaagtttgaaatcgatgatgggataccaccagataccctgtttccatatgctacgaacgcttgcaacgtagttgacaagttccccacatattctgggatgctcccggtgaaataattcgagttgatttgaaggatggagagctgcctacagttggacagagtagacaagaacttgagatccccctgtaaacggttttgggcaattacaagggctgtcaaagagttgatgttaccaattgatgccggcactgatccatccaattggtatgaagccagtgaggtgatttgtctggatatttaagccacgaaggtcatgtaggttgcgtagatcagccatgatcggaccagataggccattagactcgaggttaaaaagctgtagcctcgtgaggttccccagtgcggctgggattcctcctgacagtgcattgaagctaagatccaggatcctgaggaggctcagccttcctatgtcgaccgggagtgatcccgtgaggttggttttggtgaggttgaggacggtgaggaaagagaggttaccgagatgcgggctgagccctccgtggaggggaactcccggcagttccacggcggtgacgcgttgctgccggtgccggcggccgccgcaagagactcccacccagcggcagaagggcgtgccgacggtccagtttccggcgaggacgccgaggggatcggacacctctgctttgaaagctagcagcgcagcgaggtcgtccatgtcgctgctgctgttgctccggcctgaggacgctgcagaaaccaccgtcgacgaagagatcaacgatactacaatggccatgcatacaggaagcaatccgccgaacgccat
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| CDS seq | atggcgttcggcggattgcttcctgtatgcatggccattgtagtatcgttgatctcttcgtcgacggtggtttctgcagcgtcctcaggccggagcaacagcagcagcgacatggacgacctcgctgcgctgctagctttcaaagcagaggtgtccgatcccctcggcgtcctcgccggaaactggaccgtcggcacgcccttctgccgctgggtgggagtctcttgcggcggccgccggcaccggcagcaacgcgtcaccgccgtggaactgccgggagttcccctccacggagggctcagcccgcatctcggtaacctctctttcctcaccgtcctcaacctcaccaaaaccaacctcacgggatcactcccggtcgacataggaaggctgagcctcctcaggatcctggatcttagcttcaatgcactgtcaggaggaatcccagccgcactggggaacctcacgaggctacagctttttaacctcgagtctaatggcctatctggtccgatcatggctgatctacgcaacctacatgaccttctgccggcatcaattggtaacatcaactctttgacagcccttgtaattgcccaaaaccgtttacagggggatctcaagttcttgtctactctgtccaactgtaggcagctctccatccttcaaatcaactcgaattatttcaccgggagcatcccagaatatgtggggaacttgtcaactacgttgcaagcgttcgtagcatatggaaacagggtatctggtggtatcccatcatcgatttcaaacttgactagtctcgagatgctagatatttcagaaagccagctgcaaggtgcaattccagaatcaatcatgacgatggagaacctccaattgattcaacttgaagaaaatcgcctttctggttccatcccgtcaaatatcggtatgctaatgagtgtagaaaaattataccttcaaagcaatgaattatctggctccatacctaacggcattggtaacctcaccaagttagggaagctacttttgtctgataaccaattatcgtccacgataccgtcgagcttatttcatctaggtagcctcttccagctagatctatctcgaaaccttttgactggtgcattaccggccgatataggttatttgaagcaaattaacgtcttggatctctctaccaaccgctttacaagtagcctcccagaatcgattgggcaaattcagatgataacctatttgaacctatcagtcaattcgatacaaaactcaattccagattcctttcgtagcctaaccagcctacaaactttggatttatcccataacaacatttctggtaccatccccaagtacctggccaattttagcatccttactagcttgaacctgtctttcaataagctgcaaggccaaataccagaaggaggtgtcttctcaaacatcacgctggaatccttggtggggaactcaaggctatgtggtgtcgcccgtttaggattttcaccgtgccaaacaacctcttcgaaaagaaatggccacaagctaataaaattcttactccctactgtaatcatagtagttggagctatagcttgttgcctgtatgtacttcttaaaaggaaagacaagcaccaagaggtttctggtggtgacgttgacaagattaaccatcaattactgtcctatcatgagcttgttcgtgctactgatgatttcagtgatgataataagttggggtctggaagctttggaaaagtttttaagggccagctagacaatggtttggtggttgcaataaaagttatacatcagcatctagaacatgccataagaagctttgataccgagtgtcatgtgcttcgaatggcccgacaccgcaacttaataaggatattgaacacttgctccaacctggacttcagaccgctggttctacagtacatgcccaacggaagcttagatgcagttctgcactctgaacaaagaatgcaattaagtttcctcgagaggttggatattatgctagatgtgtcaatggcaatggaatacttgcaccatgagcactgtgaggtggtcctacactgcgacttgaagcctagcaacgttttatttgatgatgatatgacaggacatgtggcagattttggcattgcgaggctgttgttaggtgatggcaactcaatgatttctgcaagtatgccaggaacagtagggtacatggcgccagagtatgggtctcttggaaaagcatcacggaagagcgatgtgtacagctacgggattatgctgcttgaagtgttcaccaggaagagaccgacagatgctatgtttgtaggagaactgagcctaaggcagtgggttcgcagggcatttcctgcggaccttatccacgttgtagatggccagcttctacaggatggctcttcttgtacaaatacctttcatggcttcctgatgcaagtggtcgagctcggcttgctctgctcagctgactccccagagcaaaggatggcaatgtctgatgtggtagtgacactgaagaagattaaggaaaactacatcaaaacgaaagcaacgccgggaacagctagctag
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| Protein seq | MAFGGLLPVCMAIVVSLISSSTVVSAASSGRSNSSSDMDDLAALLAFKAEVSDPLGVLAGNWTVGTPFCRWVGVSCGGRRHRQQRVTAVELPGVPLHGGLSPHLGNLSFLTVLNLTKTNLTGSLPVDIGRLSLLRILDLSFNALSGGIPAALGNLTRLQLFNLESNGLSGPIMADLRNLHDLLPASIGNINSLTALVIAQNRLQGDLKFLSTLSNCRQLSILQINSNYFTGSIPEYVGNLSTTLQAFVAYGNRVSGGIPSSISNLTSLEMLDISESQLQGAIPESIMTMENLQLIQLEENRLSGSIPSNIGMLMSVEKLYLQSNELSGSIPNGIGNLTKLGKLLLSDNQLSSTIPSSLFHLGSLFQLDLSRNLLTGALPADIGYLKQINVLDLSTNRFTSSLPESIGQIQMITYLNLSVNSIQNSIPDSFRSLTSLQTLDLSHNNISGTIPKYLANFSILTSLNLSFNKLQGQIPEGGVFSNITLESLVGNSRLCGVARLGFSPCQTTSSKRNGHKLIKFLLPTVIIVVGAIACCLYVLLKRKDKHQEVSGGDVDKINHQLLSYHELVRATDDFSDDNKLGSGSFGKVFKGQLDNGLVVAIKVIHQHLEHAIRSFDTECHVLRMARHRNLIRILNTCSNLDFRPLVLQYMPNGSLDAVLHSEQRMQLSFLERLDIMLDVSMAMEYLHHEHCEVVLHCDLKPSNVLFDDDMTGHVADFGIARLLLGDGNSMISASMPGTVGYMAPEYGSLGKASRKSDVYSYGIMLLEVFTRKRPTDAMFVGELSLRQWVRRAFPADLIHVVDGQLLQDGSSCTNTFHGFLMQVVELGLLCSADSPEQRMAMSDVVVTLKKIKENYIKTKATPGTAS |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0006820 | OsLima_12g0006820.01 | Chr12 | 5892403 | 5895366 | - | NAM | ||
| CDS seq | atggcgttcggcggattgcttcctgtatgcatggccattgtagtatcgttgatctcttcgtcgacggtggtttctgcagcgtcctcaggccggagcaacagcagcagcgacatggacgacctcgctgcgctgctagctttcaaagcagaggtgtccgatcccctcggcgtcctcgccggaaactggaccgtcggcacgcccttctgccgctgggtgggagtctcttgcggcggccgccggcaccggcagcaacgcgtcaccgccgtggaactgccgggagttcccctccacggagggctcagcccgcatctcggtaacctctctttcctcaccgtcctcaacctcaccaaaaccaacctcacgggatcactcccggtcgacataggaaggctgagcctcctcaggatcctggatcttagcttcaatgcactgtcaggaggaatcccagccgcactggggaacctcacgaggctacagctttttaacctcgagtctaatggcctatctggtccgatcatggctgatctacgcaacctacatgaccttctgccggcatcaattggtaacatcaactctttgacagcccttgtaattgcccaaaaccgtttacagggggatctcaagttcttgtctactctgtccaactgtaggcagctctccatccttcaaatcaactcgaattatttcaccgggagcatcccagaatatgtggggaacttgtcaactacgttgcaagcgttcgtagcatatggaaacagggtatctggtggtatcccatcatcgatttcaaacttgactagtctcgagatgctagatatttcagaaagccagctgcaaggtgcaattccagaatcaatcatgacgatggagaacctccaattgattcaacttgaagaaaatcgcctttctggttccatcccgtcaaatatcggtatgctaatgagtgtagaaaaattataccttcaaagcaatgaattatctggctccatacctaacggcattggtaacctcaccaagttagggaagctacttttgtctgataaccaattatcgtccacgataccgtcgagcttatttcatctaggtagcctcttccagctagatctatctcgaaaccttttgactggtgcattaccggccgatataggttatttgaagcaaattaacgtcttggatctctctaccaaccgctttacaagtagcctcccagaatcgattgggcaaattcagatgataacctatttgaacctatcagtcaattcgatacaaaactcaattccagattcctttcgtagcctaaccagcctacaaactttggatttatcccataacaacatttctggtaccatccccaagtacctggccaattttagcatccttactagcttgaacctgtctttcaataagctgcaaggccaaataccagaaggaggtgtcttctcaaacatcacgctggaatccttggtggggaactcaaggctatgtggtgtcgcccgtttaggattttcaccgtgccaaacaacctcttcgaaaagaaatggccacaagctaataaaattcttactccctactgtaatcatagtagttggagctatagcttgttgcctgtatgtacttcttaaaaggaaagacaagcaccaagaggtttctggtggtgacgttgacaagattaaccatcaattactgtcctatcatgagcttgttcgtgctactgatgatttcagtgatgataataagttggggtctggaagctttggaaaagtttttaagggccagctagacaatggtttggtggttgcaataaaagttatacatcagcatctagaacatgccataagaagctttgataccgagtgtcatgtgcttcgaatggcccgacaccgcaacttaataaggatattgaacacttgctccaacctggacttcagaccgctggttctacagtacatgcccaacggaagcttagatgcagttctgcactctgaacaaagaatgcaattaagtttcctcgagaggttggatattatgctagatgtgtcaatggcaatggaatacttgcaccatgagcactgtgaggtggtcctacactgcgacttgaagcctagcaacgttttatttgatgatgatatgacaggacatgtggcagattttggcattgcgaggctgttgttaggtgatggcaactcaatgatttctgcaagtatgccaggaacagtagggtacatggcgccagagtatgggtctcttggaaaagcatcacggaagagcgatgtgtacagctacgggattatgctgcttgaagtgttcaccaggaagagaccgacagatgctatgtttgtaggagaactgagcctaaggcagtgggttcgcagggcatttcctgcggaccttatccacgttgtagatggccagcttctacaggatggctcttcttgtacaaatacctttcatggcttcctgatgcaagtggtcgagctcggcttgctctgctcagctgactccccagagcaaaggatggcaatgtctgatgtggtagtgacactgaagaagattaaggaaaactacatcaaaacgaaagcaacgccgggaacagctagctag
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| Protein seq | MAFGGLLPVCMAIVVSLISSSTVVSAASSGRSNSSSDMDDLAALLAFKAEVSDPLGVLAGNWTVGTPFCRWVGVSCGGRRHRQQRVTAVELPGVPLHGGLSPHLGNLSFLTVLNLTKTNLTGSLPVDIGRLSLLRILDLSFNALSGGIPAALGNLTRLQLFNLESNGLSGPIMADLRNLHDLLPASIGNINSLTALVIAQNRLQGDLKFLSTLSNCRQLSILQINSNYFTGSIPEYVGNLSTTLQAFVAYGNRVSGGIPSSISNLTSLEMLDISESQLQGAIPESIMTMENLQLIQLEENRLSGSIPSNIGMLMSVEKLYLQSNELSGSIPNGIGNLTKLGKLLLSDNQLSSTIPSSLFHLGSLFQLDLSRNLLTGALPADIGYLKQINVLDLSTNRFTSSLPESIGQIQMITYLNLSVNSIQNSIPDSFRSLTSLQTLDLSHNNISGTIPKYLANFSILTSLNLSFNKLQGQIPEGGVFSNITLESLVGNSRLCGVARLGFSPCQTTSSKRNGHKLIKFLLPTVIIVVGAIACCLYVLLKRKDKHQEVSGGDVDKINHQLLSYHELVRATDDFSDDNKLGSGSFGKVFKGQLDNGLVVAIKVIHQHLEHAIRSFDTECHVLRMARHRNLIRILNTCSNLDFRPLVLQYMPNGSLDAVLHSEQRMQLSFLERLDIMLDVSMAMEYLHHEHCEVVLHCDLKPSNVLFDDDMTGHVADFGIARLLLGDGNSMISASMPGTVGYMAPEYGSLGKASRKSDVYSYGIMLLEVFTRKRPTDAMFVGELSLRQWVRRAFPADLIHVVDGQLLQDGSSCTNTFHGFLMQVVELGLLCSADSPEQRMAMSDVVVTLKKIKENYIKTKATPGTAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.043365 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0638100 | SBH | 0.0 | 0.000000 | 1.090984 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g11860 | SBH | 0.092022 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0121100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020480 | SBH | 0.537014 | 1.109105 | 1.923650 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001550 | SBH | 0.281947 | 4.379057 | 2.572294 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007170 | SBH | 1.891639 | 0.527976 | 1.866642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020230 | SBH | 0.041983 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006980 | RBH | 0.0 | 10.490688 | 0.718828 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0129800 | SBH | 1.771853 | 3.7304445 | 1.205042 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006950 | RBH | 0.0 | 0.085676 | 0.043985 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0097500 | SBH | 0.614286 | 4.6201595 | 0.949073 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006700 | SBH | 0.033740 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006970 | RBH | 0.0 | 2.253475 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007020 | RBH | 0.0 | 0.0 | 0.164318 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006950 | SBH | 0.116455 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G014210 | SBH | 0.000000 | 0.297767 | 1.019125 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006950 | RBH | 0.0 | 4.084941 | 0.579358 |
