Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0003540 | OGI:07002320 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:2508764-2511725 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgagagagagtgtgagagccccgtcgcccacctacccaccacctcgcccggcggccgctcgctccgatggccgtcggccaggaaaagcccccgttgaccctgccccctcctgggcggatgtcaccagggccccgccggcctctcgtccgtccttgtcgcaggaggagctggacgcgggttggcgtgtggtgaagcgcaggagtaaagtcgctcctgctgCcggccggacaaccaccgcatttactcccccggagcggcgccctatCccccgttggctccttggcaggtgcttccgttgcctaggtttggaccatcttaaagccgcctgcagcaaacatccgaggtgctaccgttgttggttccctggccacctcgagcgtaactgctacgttgacctcgacgccaccccgccgcggaaggtccctgctgcggcgccggcagcgcccctccgacagccatcttctggtttctctgtggctgctccccaggcgcactctgctcaggccagcagcaaggcggccgcctccgagcgctcgtcggccacgcctcttgtgcgcgcagcttctcctgcccctgcagtctcagcgccatctccaaccaagcccgcgtcagctccagtgaagcctgcttgcgccaagccgatggaggagggcttgggtgccggcgacccgctcctgcgCccgcaaggcggccgcggcgtcctttcTtggacccccggcatgtcggcgatagagcagcgtctgagggggcgttccctggttgcctcggtgctctcggggagaaaggaggtctcgccggcgacgatggtcgccgcgctgagcggtctctgtggggtcccccctggggatgtccgcgtcgaggtctccaggccgtcggacttcctcctctcgttccggcgagaagaggactgctcggCcgtgctcgcgtggtcggggcgcttcaacgcggggggggggggggggggggggggggggctctggtttccttcaggcgctggcatcgcgcggtccacgcccgaacctccaagcttcttttcgtcgtcaagctggctgtggagggcctcccagcccacgccatggagatcgaggctgtcaagcagctcctcaacaagattgattgtcagttcatcgagctgttcgatccagttgatgcgtgtatgttggaggtgttggcctggtcggccgacccgtccaaaatcccgaaggagttcatccttgacatccccgagccgatgcaagaatggtggatgccgcctgcgactgatgatcctgacatgttcgagctgatcgtgtcacagtctcccccggccccgcccacggagaagaagtgtctcaccttcgatctcctcctgcatctcagagaggtggtcgaccctgtccggcagctgccagacagtccgtcctatgaccctttcctcgacgatcgcgaggCccctcgcaggcgcacttacaacgcattcctcggcaggatcgacggctctggCccgggccagctgttgggtggcggccacggtttcgcgggctcgagtgcggggacggcgggtggcctccagcgacagctgctcctcgaggtgggggtgcagcatgcggagccggcgcctgttgtCcccctggtgctgcctacgtccgcccagcaggcgccgcctccggtgctgcctgCccccgttcagcattccgtgccgtcagtggacgggctggcggctgcacagcctctagcggcgtcggactttgcacaggacgttccttcccaggcagatgctgtggccgccgttctggggtcacctgacgtccTtttggggtcggaggatatctccccgccgctcgcttcgttgagcgtcgggcaggtagctCccccttctccggtcggaggtcggacgccggacgtcgggcaggctgttgcggccgctgttctggggccgtctgacttccttcaggggccgcaattctccccgccgtcgctgtccgaagatatggggccagcgcctggctgctcggcgccaatctctcaggctgcgaccgcccaagtgcttccgtcggccggaaaccaggcttcgacctccgccatgggcgctactccgtgcacacgtctccaggtgaggcggtgatcaccatgcagctagttggggtggggccaggctcattaaccagccctgcttcagcaccagcgcgtctgggtgtgaccccacctgtaagtgagctaaggcagaaggggcttgccaggcagctatcTtttgatgcgcccgcccaagatttgccgtgatcagcggcattaatgtcgccacaacctccccaggctacggcgCcggttgatgaggatgaacgcgcgaatacgggtttcaactcccctggggcacgagaattggcgcctctgtgtgagggggcgtcgcaaggcattttgggccttgggccctggcccgaggtgcacatctccagCccagctctggtgtactgtcgtcgccacctccgtccgactacgggccgcaagtggcctactcgtcgggctgcttctgggagcccgccgcttgccacgcaggttgtggcttctccggtacagggcgcgttgtaggatgcctcccgccctgttcctgatctgctggcgggggagattgtcacctcgctcagtgatctgatggtgcccctgccaggcgcgatcctcggcaagtttctacccccgacgccggtgcgccggtcgcggcggatggagccgtacacacaaactcccaggcgtagtgagaggctggctgccatgaacggtgggcgtcaccagcactcggcctcgaaggcgcagcgtgtgctcatgaagaaactcggcgtggttgacgatgagaacaaggtggaagaaacagatatcctcaagtacctggagctctttaagacgccgctggtgccgtcccacatccaggccttggctgctctctgttgcgtcaaggtgtcaccttcacagggagtggaggtcttctga
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| CDS seq | atgagagagagtgtgagagccccgtcgcccacctacccaccacctcgcccggcggccgctcgctccgatggccgtcggccaggaaaagcccccgttgaccctgccccctcctgggcggatgtcaccagggccccgccggcctctcgtccgtccttgtcgcaggaggagctggacgcgggttggcgtgtggtgaagcgcaggagtaaagtcgctcctgctgCcggccggacaaccaccgcatttactcccccggagcggcgccctatCccccgttggctccttggcaggtgcttccgttgcctaggtttggaccatcttaaagccgcctgcagcaaacatccgaggtgctaccgttgttggttccctggccacctcgagcgtaactgctacgttgacctcgacgccaccccgccgcggaaggtccctgctgcggcgccggcagcgcccctccgacagccatcttctggtttctctgtggctgctccccaggcgcactctgctcaggccagcagcaaggcggccgcctccgagcgctcgtcggccacgcctcttgtgcgcgcagcttctcctgcccctgcagtctcagcgccatctccaaccaagcccgcgtcagctccagtgaagcctgcttgcgccaagccgatggaggagggcttgggtgccggcgacccgctcctgcgCccgcaaggcggccgcggcgtcctttcTtggacccccggcatgtcggcgatagagcagcgtctgagggggcgttccctggttgcctcggtgctctcggggagaaaggaggtctcgccggcgacgatggtcgccgcgctgagcggtctctgtggggtcccccctggggatgtccgcgtcgaggtctccaggccgtcggacttcctcctctcgttccggcgagaagaggactgctcggCcgtgctcgcgtggcgctggcatcgcgcggtccacgcccgaacctccaagcttcttttcgtcgtcaagctggctgtggagggcctcccagcccacgccatggagatcgaggctgtcaagcagctcctcaacaagattgattgtcagttcatcgagctgttcgatccagttgatgcgtgtatgttggaggtgttggcctggtcggccgacccgtccaaaatcccgaaggagttcatccttgacatccccgagccgatgcaagaatggtggatgccgcctgcgactgatgatcctgacatgttcgagctgatcgtgtcacagtctcccccggccccgcccacggagaagaagtgtctcaccttcgatctcctcctgcatctcagagaggtggtcgaccctgtccggcagctgccagacagtccgtcctatgaccctttcctcgacgatcgcgaggCccctcgcaggcgcacttacaacgcattcctcggcaggatcgacggctctggCccgggccagctgttgggtggcggccacggtttcgcgggctcgagtgcggggacggcgggtggcctccagcgacagctgctcctcgaggtgggggtgcagcatgcggagccggcgcctgttgtCcccctggtgctgcctacgtccgcccagcaggcgccgcctccggtgctgcctgCccccgttcagcattccgtgccgtcagtggacgggctggcggctgcacagcctctagcggcgtcggactttgcacaggacgttccttcccaggcagatgctgtggccgccgttctggggtcacctgacgtccTtttggggtcggaggatatctccccgccgctcgcttcgttgagcgtcgggcaggtagctCccccttctccggtcggaggtcggacgccggacgtcgggcaggctgttgcggccgctgttctggggccgtctgacttccttcaggggccgcaattctccccgccgtcgctgtccgaagatatggggccagcgcctggctgctcggcgccaatctctcaggctgcgaccgcccaagtgcttccgtcggccggaaaccaggcttcgacctccgccatgggcgctactccgtgcacacgtctccaggatgcctcccgccctgttcctgatctgctggcgggggagattgtcacctcgctcagtgatctgatggtgcccctgccaggcgcgatcctcggcaagtttctacccccgacgccggtgcgccggtcgcggcggatggagccgtacacacaaactcccaggcgtagtgagaggctggctgccatgaacggtgggcgtcaccagcactcggcctcgaaggcgcagcgtgtgctcatgaagaaactcggcgtggttgacgatgagaacaaggtggaagaaacagatatcctcaagtacctggagctctttaagacgccgctggtgccgtcccacatccaggccttggctgctctctgttgcgtcaaggtgtcaccttcacagggagtggaggtcttctga
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| Protein seq | MRESVRAPSPTYPPPRPAAARSDGRRPGKAPVDPAPSWADVTRAPPASRPSLSQEELDAGWRVVKRRSKVAPAAGRTTTAFTPPERRPIPRWLLGRCFRCLGLDHLKAACSKHPRCYRCWFPGHLERNCYVDLDATPPRKVPAAAPAAPLRQPSSGFSVAAPQAHSAQASSKAAASERSSATPLVRAASPAPAVSAPSPTKPASAPVKPACAKPMEEGLGAGDPLLRPQGGRGVLSWTPGMSAIEQRLRGRSLVASVLSGRKEVSPATMVAALSGLCGVPPGDVRVEVSRPSDFLLSFRREEDCSAVLAWRWHRAVHARTSKLLFVVKLAVEGLPAHAMEIEAVKQLLNKIDCQFIELFDPVDACMLEVLAWSADPSKIPKEFILDIPEPMQEWWMPPATDDPDMFELIVSQSPPAPPTEKKCLTFDLLLHLREVVDPVRQLPDSPSYDPFLDDREAPRRRTYNAFLGRIDGSGPGQLLGGGHGFAGSSAGTAGGLQRQLLLEVGVQHAEPAPVVPLVLPTSAQQAPPPVLPAPVQHSVPSVDGLAAAQPLAASDFAQDVPSQADAVAAVLGSPDVLLGSEDISPPLASLSVGQVAPPSPVGGRTPDVGQAVAAAVLGPSDFLQGPQFSPPSLSEDMGPAPGCSAPISQAATAQVLPSAGNQASTSAMGATPCTRLQDASRPVPDLLAGEIVTSLSDLMVPLPGAILGKFLPPTPVRRSRRMEPYTQTPRRSERLAAMNGGRHQHSASKAQRVLMKKLGVVDDENKVEETDILKYLELFKTPLVPSHIQALAALCCVKVSPSQGVEVF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0003540 | OsNaBo_12g0003540.01 | Chr12 | 2508764 | 2511725 | + | NAM | ||
| CDS seq | atgagagagagtgtgagagccccgtcgcccacctacccaccacctcgcccggcggccgctcgctccgatggccgtcggccaggaaaagcccccgttgaccctgccccctcctgggcggatgtcaccagggccccgccggcctctcgtccgtccttgtcgcaggaggagctggacgcgggttggcgtgtggtgaagcgcaggagtaaagtcgctcctgctgCcggccggacaaccaccgcatttactcccccggagcggcgccctatCccccgttggctccttggcaggtgcttccgttgcctaggtttggaccatcttaaagccgcctgcagcaaacatccgaggtgctaccgttgttggttccctggccacctcgagcgtaactgctacgttgacctcgacgccaccccgccgcggaaggtccctgctgcggcgccggcagcgcccctccgacagccatcttctggtttctctgtggctgctccccaggcgcactctgctcaggccagcagcaaggcggccgcctccgagcgctcgtcggccacgcctcttgtgcgcgcagcttctcctgcccctgcagtctcagcgccatctccaaccaagcccgcgtcagctccagtgaagcctgcttgcgccaagccgatggaggagggcttgggtgccggcgacccgctcctgcgCccgcaaggcggccgcggcgtcctttcTtggacccccggcatgtcggcgatagagcagcgtctgagggggcgttccctggttgcctcggtgctctcggggagaaaggaggtctcgccggcgacgatggtcgccgcgctgagcggtctctgtggggtcccccctggggatgtccgcgtcgaggtctccaggccgtcggacttcctcctctcgttccggcgagaagaggactgctcggCcgtgctcgcgtggcgctggcatcgcgcggtccacgcccgaacctccaagcttcttttcgtcgtcaagctggctgtggagggcctcccagcccacgccatggagatcgaggctgtcaagcagctcctcaacaagattgattgtcagttcatcgagctgttcgatccagttgatgcgtgtatgttggaggtgttggcctggtcggccgacccgtccaaaatcccgaaggagttcatccttgacatccccgagccgatgcaagaatggtggatgccgcctgcgactgatgatcctgacatgttcgagctgatcgtgtcacagtctcccccggccccgcccacggagaagaagtgtctcaccttcgatctcctcctgcatctcagagaggtggtcgaccctgtccggcagctgccagacagtccgtcctatgaccctttcctcgacgatcgcgaggCccctcgcaggcgcacttacaacgcattcctcggcaggatcgacggctctggCccgggccagctgttgggtggcggccacggtttcgcgggctcgagtgcggggacggcgggtggcctccagcgacagctgctcctcgaggtgggggtgcagcatgcggagccggcgcctgttgtCcccctggtgctgcctacgtccgcccagcaggcgccgcctccggtgctgcctgCccccgttcagcattccgtgccgtcagtggacgggctggcggctgcacagcctctagcggcgtcggactttgcacaggacgttccttcccaggcagatgctgtggccgccgttctggggtcacctgacgtccTtttggggtcggaggatatctccccgccgctcgcttcgttgagcgtcgggcaggtagctCccccttctccggtcggaggtcggacgccggacgtcgggcaggctgttgcggccgctgttctggggccgtctgacttccttcaggggccgcaattctccccgccgtcgctgtccgaagatatggggccagcgcctggctgctcggcgccaatctctcaggctgcgaccgcccaagtgcttccgtcggccggaaaccaggcttcgacctccgccatgggcgctactccgtgcacacgtctccaggatgcctcccgccctgttcctgatctgctggcgggggagattgtcacctcgctcagtgatctgatggtgcccctgccaggcgcgatcctcggcaagtttctacccccgacgccggtgcgccggtcgcggcggatggagccgtacacacaaactcccaggcgtagtgagaggctggctgccatgaacggtgggcgtcaccagcactcggcctcgaaggcgcagcgtgtgctcatgaagaaactcggcgtggttgacgatgagaacaaggtggaagaaacagatatcctcaagtacctggagctctttaagacgccgctggtgccgtcccacatccaggccttggctgctctctgttgcgtcaaggtgtcaccttcacagggagtggaggtcttctga
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| Protein seq | MRESVRAPSPTYPPPRPAAARSDGRRPGKAPVDPAPSWADVTRAPPASRPSLSQEELDAGWRVVKRRSKVAPAAGRTTTAFTPPERRPIPRWLLGRCFRCLGLDHLKAACSKHPRCYRCWFPGHLERNCYVDLDATPPRKVPAAAPAAPLRQPSSGFSVAAPQAHSAQASSKAAASERSSATPLVRAASPAPAVSAPSPTKPASAPVKPACAKPMEEGLGAGDPLLRPQGGRGVLSWTPGMSAIEQRLRGRSLVASVLSGRKEVSPATMVAALSGLCGVPPGDVRVEVSRPSDFLLSFRREEDCSAVLAWRWHRAVHARTSKLLFVVKLAVEGLPAHAMEIEAVKQLLNKIDCQFIELFDPVDACMLEVLAWSADPSKIPKEFILDIPEPMQEWWMPPATDDPDMFELIVSQSPPAPPTEKKCLTFDLLLHLREVVDPVRQLPDSPSYDPFLDDREAPRRRTYNAFLGRIDGSGPGQLLGGGHGFAGSSAGTAGGLQRQLLLEVGVQHAEPAPVVPLVLPTSAQQAPPPVLPAPVQHSVPSVDGLAAAQPLAASDFAQDVPSQADAVAAVLGSPDVLLGSEDISPPLASLSVGQVAPPSPVGGRTPDVGQAVAAAVLGPSDFLQGPQFSPPSLSEDMGPAPGCSAPISQAATAQVLPSAGNQASTSAMGATPCTRLQDASRPVPDLLAGEIVTSLSDLMVPLPGAILGKFLPPTPVRRSRRMEPYTQTPRRSERLAAMNGGRHQHSASKAQRVLMKKLGVVDDENKVEETDILKYLELFKTPLVPSHIQALAALCCVKVSPSQGVEVF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0568100 | SBH | 0.138168 | 0.0 | 0.337700 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0568100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0003370 | RBH | 0.000000 | 0.0 | 0.903565 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023490 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017550 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017110 | SBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0331400 | RBH | 0.004413 | 0.03901 | 0.0026515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0017530 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0087800 | SBH | 0 | 0 | 0.0159855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007180 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017500 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001630 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017180 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003410 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003320 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
