Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0568100 | OGI:12060770 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:23376363-23378129 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAACAAATTTCGCAATTAGGGTTTTTGAGAGATAATTTTCCCGCTAGGCGCCACGACGGAACGGGCGCTACATGATCTGTGTGAACTGATCAGCTGATGGGCTTCGCTGCATCTCATCCAGAACGACGACATCGCAGGAGACTGCAAGGGATGGCGCTGCACAGCTCTTTGGCTGCAATTGTGGTGAGAACCAGATCTTCGACGAAGGCATTGCAGTTACCTTGCTACCCTCTTCGGATCGTCCTGTCGCCTGAACCTCACTTCCCAACCGCTAAGCATCACTTCTCGCGACCAGAGCAACCTCGCCCCCTGTTGCCAGCACATCCTTCCCCGTCGCCAGAACGCCATTCTCCGTCGCCAGCACATCTTTCCCCGTCGCCAGAACGTCTCTCCCCGCCACCAGCGCCGTGCTCGTGGCAAGCACACGCGGCACGACATTACACGCAGCATCATCTCCCCTCCCCGCCATCCTATTCCCAGGCTCGCCACTTGAGTGTTCCTCTATCGTATCCCTGTCCGAAGCATGCAGGCCCGAGCCGGCGTGTTCAGTGTGCTCGTCGTCGCGGGCGGTATCCCTCAGCGCGCCGGGGTTGGTAGGGATCATCTCGGACACCCGCTGAACTGAAGATGTCGACCAGGTGCGCCCCGGTAGCCCACCAGCAAAGCCAGATGCTCCGCCAAAAGGCCGACCTCCGCCTTGTTTCGACGTCCACGGCCCTGTGCCGTCGATTCGGCCAGCCCAGCAGGAGAACGTAACCTGGCGCGGGACGTCATCATCATCTTCGTCGTTGGAGGCCGTGGAGAGGGGAACATGGAGGGGCGTCGGGTCAATGATCTCCTCAATGTGCACAATGATATTGTACGTCAGCGTGCACTTGTGCAGAGGCGCCCTTGGAATCCTGATTGATCCCGCCATACGTTCCCAGCACGGCGGGCCGCCCCCCGCGCGCTCTGGGATCTCCACCTCCAGCGTTGTTGGCACCGCAGACGGGTTCTTGAGCCAGGCGAACATGGTGAGAACCCTCGCGTCCGCCGGCGGAACAAGCTCCACCAACTCTCCACCCAGCTCACGGATCAGCTGGGCCATCGCCTCCTCATCCCAGGCGTGCTGGGGAAGCCCTTCTAATGACAGCTTGGTGAAGAATTGGAACCTCGTGCTGCTGGCCAGCAGGCGCCTGTTCCAGCTCTTGAAGGCGATTGGCGCCCCTTGGAAGAAGACTTGTTTGGATTTGCCGAGGACCCAATCCTTTTCTCTGGCAGAACGAAACACAATTAGGTAGTCCTCAGGGGTCGTTACCTCCACCCGGAAGTGCGCGGGGAGGATGCCACAGTCGACGATCACCGCAACCAGATCTCTAGGTGAGAGCGCTGGCTGGTTGCCAAGCACTGTGGCCAGGAGCACCTTCTGCTCGAAGATGGCCTCCGTCTCCACCATGCGCGGCGTCCAGGAGATGGTGCACCGCCCCGACTCCGGCCGGATGTTGGCGTCCCCGGTCCGCCACTCCTTCATGACCCGAGAGGGCTGCTGAGCGCAGATCTGAAAGCTAGCCATGCCATCACCAGCAGCCACTCCCTCTTCTCGCCCCTTCTTTCTGGGAGGCAAAGCTTCTAGCACTTCTTTCCGCGGTTTTTCACCTCCCGCTGGCTTCGTTGCCACTTCTTTTGAACCAGTGGCCGGCTGCGCCCTAGCCGCACGGGAGGTAGGGCAATTCCTAGCGATGTGCCCTGAGTACCAGCAGTTGTAGCATCGCGTGCTTCCTGGGCAG
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| CDS seq | TGCCCAGGAAGCACGCGATGCTACAACTGCTGGTACTCAGGGCACATCGCTAGGAATTGCCCTACCTCCCGTGCGGCTAGGGCGCAGCCGGCCACTGGTTCAAAAGAAGTGGCAACGAAGCCAGCGGGAGGTGAAAAACCGCGGAAAGAAGTGCTAGAAGCTTTGCCTCCCAGAAAGAAGGGGCGAGAAGAGGGAGTGGCTGCTGGTGATGGCATGGCTAGCTTTCAGATCTGCGCTCAGCAGCCCTCTCGGGTCATGAAGGAGTGGCGGACCGGGGACGCCAACATCCGGCCGGAGTCGGGGCGGTGCACCATCTCCTGGACGCCGCGCATGGTGGAGACGGAGGCCATCTTCGAGCAGAAGGTGCTCCTGGCCACAGTGCTTGGCAACCAGCCAGCGCTCTCACCTAGAGATCTGGTTGCGGTGATCGTCGACTGTGGCATCCTCCCCGCGCACTTCCGGGTGGAGGTAACGACCCCTGAGGACTACCTAATTGTGTTTCGTTCTGCCAGAGAAAAGGATTGGGTCCTCGGCAAATCCAAACAAGTCTTCTTCCAAGGGGCGCCAATCGCCTTCAAGAGCTGGAACAGGCGCCTGCTGGCCAGCAGCACGAGGTTCCAATTCTTCACCAAGCTGTCATTAGAAGGGCTTCCCCAGCACGCCTGGGATGAGGAGGCGATGGCCCAGCTGATCCGTGAGCTGGGTGGAGAGTTGGTGGAGCTTGTTCCGCCGGCGGACGCGAGGGTTCTCACCATGTTCGCCTGGCTCAAGAACCCGTCTGCGGTGCCAACAACGCTGGAGGTGGAGATCCCAGAGCGCGCGGGGGGCGGCCCGCCGTGCTGGGAACGTATGGCGGGATCAATCAGGATTCCAAGGGCGCCTCTGCACAAGTGCACGCTGACGTACAATATCATTGTGCACATTGAGGAGATCATTGACCCGACGCCCCTCCATGTTCCCCTCTCCACGGCCTCCAACGACGAAGATGATGATGACGTCCCGCGCCAGGTTACGTTCTCCTGCTGGGCTGGCCGAATCGACGGCACAGGGCCGTGGACGTCGAAACAAGGCGGAGGTCGGCCTTTTGGCGGAGCATCTGGCTTTGCTGGTGGGCTACCGGGGCGCACCTGGTCGACATCTTCAGTTCAGCGGGTGTCCGAGATGATCCCTACCAACCCCGGCGCGCTGAGGGATACCGCCCGCGACGACGAGCACACTGAACACGCCGGCTCGGGCCTGCATGCTTCGGACAGGGATACGATAGAGGAACACTCAAGTGGCGAGCCTGGGAATAGGATGGCGGGGAGGGGAGATGATGCTGCGTGTAATGTCGTGCCGCGTGTGCTTGCCACGAGCACGGCGCTGGTGGCGGGGAGAGACGTTCTGGCGACGGGGAAAGATGTGCTGGCGACGGAGAATGGCGTTCTGGCGACGGGGAAGGATGTGCTGGCAACAGGGGGCGAGGTTGCTCTGGTCGCGAGAAGTGATGCTTAG
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| Protein seq | CPGSTRCYNCWYSGHIARNCPTSRAARAQPATGSKEVATKPAGGEKPRKEVLEALPPRKKGREEGVAAGDGMASFQICAQQPSRVMKEWRTGDANIRPESGRCTISWTPRMVETEAIFEQKVLLATVLGNQPALSPRDLVAVIVDCGILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPIAFKSWNRRLLASSTRFQFFTKLSLEGLPQHAWDEEAMAQLIRELGGELVELVPPADARVLTMFAWLKNPSAVPTTLEVEIPERAGGGPPCWERMAGSIRIPRAPLHKCTLTYNIIVHIEEIIDPTPLHVPLSTASNDEDDDDVPRQVTFSCWAGRIDGTGPWTSKQGGGRPFGGASGFAGGLPGRTWSTSSVQRVSEMIPTNPGALRDTARDDEHTEHAGSGLHASDRDTIEEHSSGEPGNRMAGRGDDAACNVVPRVLATSTALVAGRDVLATGKDVLATENGVLATGKDVLATGGEVALVARSDA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0568100 | OsNip_12t0568100-01 | Chr12 | 23376363 | 23378129 | - | RAP2018-11-26 | ||
| CDS seq | TGCCCAGGAAGCACGCGATGCTACAACTGCTGGTACTCAGGGCACATCGCTAGGAATTGCCCTACCTCCCGTGCGGCTAGGGCGCAGCCGGCCACTGGTTCAAAAGAAGTGGCAACGAAGCCAGCGGGAGGTGAAAAACCGCGGAAAGAAGTGCTAGAAGCTTTGCCTCCCAGAAAGAAGGGGCGAGAAGAGGGAGTGGCTGCTGGTGATGGCATGGCTAGCTTTCAGATCTGCGCTCAGCAGCCCTCTCGGGTCATGAAGGAGTGGCGGACCGGGGACGCCAACATCCGGCCGGAGTCGGGGCGGTGCACCATCTCCTGGACGCCGCGCATGGTGGAGACGGAGGCCATCTTCGAGCAGAAGGTGCTCCTGGCCACAGTGCTTGGCAACCAGCCAGCGCTCTCACCTAGAGATCTGGTTGCGGTGATCGTCGACTGTGGCATCCTCCCCGCGCACTTCCGGGTGGAGGTAACGACCCCTGAGGACTACCTAATTGTGTTTCGTTCTGCCAGAGAAAAGGATTGGGTCCTCGGCAAATCCAAACAAGTCTTCTTCCAAGGGGCGCCAATCGCCTTCAAGAGCTGGAACAGGCGCCTGCTGGCCAGCAGCACGAGGTTCCAATTCTTCACCAAGCTGTCATTAGAAGGGCTTCCCCAGCACGCCTGGGATGAGGAGGCGATGGCCCAGCTGATCCGTGAGCTGGGTGGAGAGTTGGTGGAGCTTGTTCCGCCGGCGGACGCGAGGGTTCTCACCATGTTCGCCTGGCTCAAGAACCCGTCTGCGGTGCCAACAACGCTGGAGGTGGAGATCCCAGAGCGCGCGGGGGGCGGCCCGCCGTGCTGGGAACGTATGGCGGGATCAATCAGGATTCCAAGGGCGCCTCTGCACAAGTGCACGCTGACGTACAATATCATTGTGCACATTGAGGAGATCATTGACCCGACGCCCCTCCATGTTCCCCTCTCCACGGCCTCCAACGACGAAGATGATGATGACGTCCCGCGCCAGGTTACGTTCTCCTGCTGGGCTGGCCGAATCGACGGCACAGGGCCGTGGACGTCGAAACAAGGCGGAGGTCGGCCTTTTGGCGGAGCATCTGGCTTTGCTGGTGGGCTACCGGGGCGCACCTGGTCGACATCTTCAGTTCAGCGGGTGTCCGAGATGATCCCTACCAACCCCGGCGCGCTGAGGGATACCGCCCGCGACGACGAGCACACTGAACACGCCGGCTCGGGCCTGCATGCTTCGGACAGGGATACGATAGAGGAACACTCAAGTGGCGAGCCTGGGAATAGGATGGCGGGGAGGGGAGATGATGCTGCGTGTAATGTCGTGCCGCGTGTGCTTGCCACGAGCACGGCGCTGGTGGCGGGGAGAGACGTTCTGGCGACGGGGAAAGATGTGCTGGCGACGGAGAATGGCGTTCTGGCGACGGGGAAGGATGTGCTGGCAACAGGGGGCGAGGTTGCTCTGGTCGCGAGAAGTGATGCTTAG
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| Protein seq | CPGSTRCYNCWYSGHIARNCPTSRAARAQPATGSKEVATKPAGGEKPRKEVLEALPPRKKGREEGVAAGDGMASFQICAQQPSRVMKEWRTGDANIRPESGRCTISWTPRMVETEAIFEQKVLLATVLGNQPALSPRDLVAVIVDCGILPAHFRVEVTTPEDYLIVFRSAREKDWVLGKSKQVFFQGAPIAFKSWNRRLLASSTRFQFFTKLSLEGLPQHAWDEEAMAQLIRELGGELVELVPPADARVLTMFAWLKNPSAVPTTLEVEIPERAGGGPPCWERMAGSIRIPRAPLHKCTLTYNIIVHIEEIIDPTPLHVPLSTASNDEDDDDVPRQVTFSCWAGRIDGTGPWTSKQGGGRPFGGASGFAGGLPGRTWSTSSVQRVSEMIPTNPGALRDTARDDEHTEHAGSGLHASDRDTIEEHSSGEPGNRMAGRGDDAACNVVPRVLATSTALVAGRDVLATGKDVLATENGVLATGKDVLATGGEVALVARSDA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.138168 | 0.0 | 0.337700 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38040 | RBH | 0.073740 | 0.0 | 0.068605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0568100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017740 | RBH | 0.0 | 24.691441 | 0.593272 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017860 | RBH | 0.0 | 2.086544 | 0.093533 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018230 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017550 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017120 | RBH | 0.473759 | 0.0 | 0.515150 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017010 | SBH | 0.000000 | 120.588120 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017510 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013760 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013970 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017050 | RBH | 0.0 | 0.0 | 0.0 |
