Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0003410 | OGI:07002320 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:2446469-2449415 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgagagagagtgtgagagccccgtcgcccacctacccaccacctcgcccggcggccgctcgctccgatggccgtcggccaggaaaagcccccgttgaccctgccccctcctgggcggatgtcaccagggccccgccggcctctcgtccgtccttgtcgcaggaggagctggacgcgggttggcgtgtggtgaagcgcaggagtaaagtcgctcctgctgccggccggacaaccaccgcatttactcccccggagcggcgccctatcccccgttggctccttggcaggtgcttccgttgcctaggtttggaccatcttaaagccgcctgcagcaaacatccgaggtgctaccgttgttggttccctggccacctcgagcgtaactgctacgttgacctcgacgccaccccgccgcggaaggtccctgctgcggcgccggcagcgcccctccgacagccatcttctggtttctctgtggctgctccccaggcgcactctgctcaggccagcagcaaggcggccgcctccgagcgctcgtcggccacgcctcttgtgcgcgcagcttctcctgcccctgcagtctcagcgccatctccaaccaagcccgcgtcagctccagtgaagcctgcttgcgccaagccgatggaggagggcttgggtgccggcgacccgctcctgcgcccgcaaggcggccgcggcgtcctttcttggacccccggcatgtcggcgatagagcagcgtctgagggggcgttccctggttgcctcggtgctctcggggagaaaggaggtctcgccggcgacgatggtcgccgcgctgagcggtctctgtggggtcccccctggggatgtccgcgtcgaggtctccaggccgtcggacttcctcctctcgttccggcgagaagaggactgctcggccgtgctcgcgtggtcggggcgcttcaacgTGGGGGGGAGGGGCTCTGGTTTCCTTCAGGCGTTGGCATCGCGCGGTCCACGCCCGAACCTCCAAGCTTCTTTTCGTCGTCAAGCTGGCTGTGGAGGGCCTCCCAGCCCACGCCATGGAGATCGAGGCTGTCAAGCAGCTCCTCAACAAGATTGATTGTCAGTTCATCGAGCTGTTCGATCCAGTTGATGCGTGTATGTTGGAGGTGTTGGCCTGGTCGGCCGACCCGTCCAAAATCCccgaaggagttcatccttgacatccccgagccgatgcaagaatggtggatgccgcctgcgactgatgatcctgacatgttcgagctgatcgtgtcacagtctcccccggccccgcccacggagaagaagtgtctcaccttcgatctcctcctgcatctcagagaggtggtcgaccctgtccggcagctgccagacagtccgtcctatgaccctttcctcgacgatcgcgaggcccctcgcaggcgcacttacaacgcattcctcggcaggatcgacggctctggcccgggccagctgttgggtggcggccacggtttcgcgggctcgagtgcggggacggcgggtggcctccagcgacagctgctcctcgaggtgggggtgcagcatgcggagccggcgcctgttgtccccctggtgctgcctacgtccgcccagcaggcgccgcctccggtgctgcctgCccccgttcagcattccgtgccgtcagtggacgggctggcggctgcacagcctctagcggcgtcggactttgcacaggacgttccttcccaggcagatgctgtggccgccgttctggggtcacctgacgtccttttggggtcggaggatatctccccgccgctcgcttcgttgagcgtcgggcaggtagctcccccttctccggtcggaggtcggacgccggacgtcgggcaggctgttgcggccgctgttctggggccgtctgacttccttcaggggccgcaattctccccgccgtcgctgtccgaagatatggggccagcgcctggctgctcggcgccaatctctcaggctgcgaccgcccaagtgcttccgtcggccggaaaccaggcttcgacctccgccatgggcgctactccgtgcacacgtctccaggtgaggcggtgatcaccatgcagctagttggggtggggccaggctcattaaccagccctgcttcagcaccagcgcgtctgggtgtgaccccacctgtaagtgagctaaggcagaaggggcttgccaggcagctatcttttgatgcgcccgcccaagatttgccgtgatcagcggcattaatgtcgccacaacctccccaggctacggcgccggttgatgaggatgaacgcgcgaatacgggtttcaactcccctggggcacgagaattggcgcctctgtgtgagggggcgtcgcaaggcattttgggccttgggccctggcccgaggtgcacatctccagcccagctctggtgtactgtcgtcgccacctccgtccgactacgggccgcaagtggcctactcgtcgggctgcttctgggagcccgccgcttgccacgcaggttgtggcttctccggtacagggcgcgttgtaggatgcctcccgccctgttcctgatctgctggcgggggagattgtcacctcgctcagtgatctgatggtgcccctgccaggcgcgatcctcggcaagtttctacccccgacgccggtgcgccggtcgcggcggatggagccgtacacacaaactcccaggcgtagtgagaggctggctgccatgaacggtgggcgtcaccagcactcggcctcgaaggcgcagcgtgtgctcatgaagaaactcggcgtggttgacgatgagaacaaggtggaagaaacagatatcctcaagtacctggagctctttaagacgccgctggtgccgtcccacatccaggccttggctgctctctgttgcgtcaaggtgtcaccttcacagggagtggaggtcttctga
More
|
||||||||||
| CDS seq | atgagagagagtgtgagagccccgtcgcccacctacccaccacctcgcccggcggccgctcgctccgatggccgtcggccaggaaaagcccccgttgaccctgccccctcctgggcggatgtcaccagggccccgccggcctctcgtccgtccttgtcgcaggaggagctggacgcgggttggcgtgtggtgaagcgcaggagtaaagtcgctcctgctgccggccggacaaccaccgcatttactcccccggagcggcgccctatcccccgttggctccttggcaggtgcttccgttgcctaggtttggaccatcttaaagccgcctgcagcaaacatccgaggtgctaccgttgttggttccctggccacctcgagcgtaactgctacgttgacctcgacgccaccccgccgcggaaggtccctgctgcggcgccggcagcgcccctccgacagccatcttctggtttctctgtggctgctccccaggcgcactctgctcaggccagcagcaaggcggccgcctccgagcgctcgtcggccacgcctcttgtgcgcgcagcttctcctgcccctgcagtctcagcgccatctccaaccaagcccgcgtcagctccagtgaagcctgcttgcgccaagccgatggaggagggcttgggtgccggcgacccgctcctgcgcccgcaaggcggccgcggcgtcctttcttggacccccggcatgtcggcgatagagcagcgtctgagggggcgttccctggttgcctcggtgctctcggggagaaaggaggtctcgccggcgacgatggtcgccgcgctgagcggtctctgtggggtcccccctggggatgtccgcgtcgaggtctccaggccgtcggacttcctcctctcgttccggcgagaagaggactgctcggccgtgctcgcgtgGTGTTGGCCTGGTCGGCCGACCCGTCCAAAATCCccgaaggagttcatccttgacatccccgagccgatgcaagaatggtggatgccgcctgcgactgatgatcctgacatgttcgagctgatcgtgtcacagtctcccccggccccgcccacggagaagaagtgtctcaccttcgatctcctcctgcatctcagagaggtggtcgaccctgtccggcagctgccagacagtccgtcctatgaccctttcctcgacgatcgcgaggcccctcgcaggcgcacttacaacgcattcctcggcaggatcgacggctctggcccgggccagctgttgggtggcggccacggtttcgcgggctcgagtgcggggacggcgggtggcctccagcgacagctgctcctcgaggtgggggtgcagcatgcggagccggcgcctgttgtccccctggtgctgcctacgtccgcccagcaggcgccgcctccggtgctgcctgCccccgttcagcattccgtgccgtcagtggacgggctggcggctgcacagcctctagcggcgtcggactttgcacaggacgttccttcccaggcagatgctgtggccgccgttctggggtcacctgacgtccttttggggtcggaggatatctccccgccgctcgcttcgttgagcgtcgggcaggtagctcccccttctccggtcggaggtcggacgccggacgtcgggcaggctgttgcggccgctgttctggggccgtctgacttccttcaggggccgcaattctccccgccgtcgctgtccgaagatatggggccagcgcctggctgctcggcgccaatctctcaggctgcgaccgcccaagtgcttccgtcggccggaaaccaggcttcgacctccgccatgggcgctactccgtgcacacgtctccaggatgcctcccgccctgttcctgatctgctggcgggggagattgtcacctcgctcagtgatctgatggtgcccctgccaggcgcgatcctcggcaagtttctacccccgacgccggtgcgccggtcgcggcggatggagccgtacacacaaactcccaggcgtagtgagaggctggctgccatgaacggtgggcgtcaccagcactcggcctcgaaggcgcagcgtgtgctcatgaagaaactcggcgtggttgacgatgagaacaaggtggaagaaacagatatcctcaagtacctggagctctttaagacgccgctggtgccgtcccacatccaggccttggctgctctctgttgcgtcaaggtgtcaccttcacagggagtggaggtcttctga
More
|
||||||||||
| Protein seq | MRESVRAPSPTYPPPRPAAARSDGRRPGKAPVDPAPSWADVTRAPPASRPSLSQEELDAGWRVVKRRSKVAPAAGRTTTAFTPPERRPIPRWLLGRCFRCLGLDHLKAACSKHPRCYRCWFPGHLERNCYVDLDATPPRKVPAAAPAAPLRQPSSGFSVAAPQAHSAQASSKAAASERSSATPLVRAASPAPAVSAPSPTKPASAPVKPACAKPMEEGLGAGDPLLRPQGGRGVLSWTPGMSAIEQRLRGRSLVASVLSGRKEVSPATMVAALSGLCGVPPGDVRVEVSRPSDFLLSFRREEDCSAVLAWCWPGRPTRPKSPKEFILDIPEPMQEWWMPPATDDPDMFELIVSQSPPAPPTEKKCLTFDLLLHLREVVDPVRQLPDSPSYDPFLDDREAPRRRTYNAFLGRIDGSGPGQLLGGGHGFAGSSAGTAGGLQRQLLLEVGVQHAEPAPVVPLVLPTSAQQAPPPVLPAPVQHSVPSVDGLAAAQPLAASDFAQDVPSQADAVAAVLGSPDVLLGSEDISPPLASLSVGQVAPPSPVGGRTPDVGQAVAAAVLGPSDFLQGPQFSPPSLSEDMGPAPGCSAPISQAATAQVLPSAGNQASTSAMGATPCTRLQDASRPVPDLLAGEIVTSLSDLMVPLPGAILGKFLPPTPVRRSRRMEPYTQTPRRSERLAAMNGGRHQHSASKAQRVLMKKLGVVDDENKVEETDILKYLELFKTPLVPSHIQALAALCCVKVSPSQGVEVF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0003410 | OsLaMu_12g0003410.01 | Chr12 | 2446469 | 2449415 | + | NAM | ||
| CDS seq | atgagagagagtgtgagagccccgtcgcccacctacccaccacctcgcccggcggccgctcgctccgatggccgtcggccaggaaaagcccccgttgaccctgccccctcctgggcggatgtcaccagggccccgccggcctctcgtccgtccttgtcgcaggaggagctggacgcgggttggcgtgtggtgaagcgcaggagtaaagtcgctcctgctgccggccggacaaccaccgcatttactcccccggagcggcgccctatcccccgttggctccttggcaggtgcttccgttgcctaggtttggaccatcttaaagccgcctgcagcaaacatccgaggtgctaccgttgttggttccctggccacctcgagcgtaactgctacgttgacctcgacgccaccccgccgcggaaggtccctgctgcggcgccggcagcgcccctccgacagccatcttctggtttctctgtggctgctccccaggcgcactctgctcaggccagcagcaaggcggccgcctccgagcgctcgtcggccacgcctcttgtgcgcgcagcttctcctgcccctgcagtctcagcgccatctccaaccaagcccgcgtcagctccagtgaagcctgcttgcgccaagccgatggaggagggcttgggtgccggcgacccgctcctgcgcccgcaaggcggccgcggcgtcctttcttggacccccggcatgtcggcgatagagcagcgtctgagggggcgttccctggttgcctcggtgctctcggggagaaaggaggtctcgccggcgacgatggtcgccgcgctgagcggtctctgtggggtcccccctggggatgtccgcgtcgaggtctccaggccgtcggacttcctcctctcgttccggcgagaagaggactgctcggccgtgctcgcgtgGTGTTGGCCTGGTCGGCCGACCCGTCCAAAATCCccgaaggagttcatccttgacatccccgagccgatgcaagaatggtggatgccgcctgcgactgatgatcctgacatgttcgagctgatcgtgtcacagtctcccccggccccgcccacggagaagaagtgtctcaccttcgatctcctcctgcatctcagagaggtggtcgaccctgtccggcagctgccagacagtccgtcctatgaccctttcctcgacgatcgcgaggcccctcgcaggcgcacttacaacgcattcctcggcaggatcgacggctctggcccgggccagctgttgggtggcggccacggtttcgcgggctcgagtgcggggacggcgggtggcctccagcgacagctgctcctcgaggtgggggtgcagcatgcggagccggcgcctgttgtccccctggtgctgcctacgtccgcccagcaggcgccgcctccggtgctgcctgCccccgttcagcattccgtgccgtcagtggacgggctggcggctgcacagcctctagcggcgtcggactttgcacaggacgttccttcccaggcagatgctgtggccgccgttctggggtcacctgacgtccttttggggtcggaggatatctccccgccgctcgcttcgttgagcgtcgggcaggtagctcccccttctccggtcggaggtcggacgccggacgtcgggcaggctgttgcggccgctgttctggggccgtctgacttccttcaggggccgcaattctccccgccgtcgctgtccgaagatatggggccagcgcctggctgctcggcgccaatctctcaggctgcgaccgcccaagtgcttccgtcggccggaaaccaggcttcgacctccgccatgggcgctactccgtgcacacgtctccaggatgcctcccgccctgttcctgatctgctggcgggggagattgtcacctcgctcagtgatctgatggtgcccctgccaggcgcgatcctcggcaagtttctacccccgacgccggtgcgccggtcgcggcggatggagccgtacacacaaactcccaggcgtagtgagaggctggctgccatgaacggtgggcgtcaccagcactcggcctcgaaggcgcagcgtgtgctcatgaagaaactcggcgtggttgacgatgagaacaaggtggaagaaacagatatcctcaagtacctggagctctttaagacgccgctggtgccgtcccacatccaggccttggctgctctctgttgcgtcaaggtgtcaccttcacagggagtggaggtcttctga
More
|
|||||||
| Protein seq | MRESVRAPSPTYPPPRPAAARSDGRRPGKAPVDPAPSWADVTRAPPASRPSLSQEELDAGWRVVKRRSKVAPAAGRTTTAFTPPERRPIPRWLLGRCFRCLGLDHLKAACSKHPRCYRCWFPGHLERNCYVDLDATPPRKVPAAAPAAPLRQPSSGFSVAAPQAHSAQASSKAAASERSSATPLVRAASPAPAVSAPSPTKPASAPVKPACAKPMEEGLGAGDPLLRPQGGRGVLSWTPGMSAIEQRLRGRSLVASVLSGRKEVSPATMVAALSGLCGVPPGDVRVEVSRPSDFLLSFRREEDCSAVLAWCWPGRPTRPKSPKEFILDIPEPMQEWWMPPATDDPDMFELIVSQSPPAPPTEKKCLTFDLLLHLREVVDPVRQLPDSPSYDPFLDDREAPRRRTYNAFLGRIDGSGPGQLLGGGHGFAGSSAGTAGGLQRQLLLEVGVQHAEPAPVVPLVLPTSAQQAPPPVLPAPVQHSVPSVDGLAAAQPLAASDFAQDVPSQADAVAAVLGSPDVLLGSEDISPPLASLSVGQVAPPSPVGGRTPDVGQAVAAAVLGPSDFLQGPQFSPPSLSEDMGPAPGCSAPISQAATAQVLPSAGNQASTSAMGATPCTRLQDASRPVPDLLAGEIVTSLSDLMVPLPGAILGKFLPPTPVRRSRRMEPYTQTPRRSERLAAMNGGRHQHSASKAQRVLMKKLGVVDDENKVEETDILKYLELFKTPLVPSHIQALAALCCVKVSPSQGVEVF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0568100 | SBH | 0.138168 | 0.0 | 0.337700 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0568100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0003370 | RBH | 0.000000 | 0.0 | 0.903565 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017850 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023490 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001620 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0007260 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001630 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003320 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0003540 | RBH | 0.0 | 0.0 | 0.0 |
